Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3784.1 and Xcc-8004.3785.1 overlap by 4 nucleotides Xcc-8004.3785.1 and Xcc-8004.3786.1 overlap by 4 nucleotides Xcc-8004.3786.1 and Xcc-8004.3787.1 overlap by 4 nucleotides
Xcc-8004.3784.1: Xcc-8004.3784.1 - Signal transduction histidine kinase, at 3,658,134 to 3,661,274
Xcc-8004.3784.1
Xcc-8004.3785.1: Xcc-8004.3785.1 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 3,661,271 to 3,662,095
Xcc-8004.3785.1
Xcc-8004.3786.1: Xcc-8004.3786.1 - Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61), at 3,662,092 to 3,662,679
Xcc-8004.3786.1
Xcc-8004.3787.1: Xcc-8004.3787.1 - Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY, at 3,662,676 to 3,663,800
Xcc-8004.3787.1
Position (kb) 3662
3663 Strain fitness (log2 ratio) -1
0
1
2 at 3661.207 kb on - strand at 3661.207 kb on - strand at 3661.207 kb on - strand at 3661.566 kb on - strand, within Xcc-8004.3785.1 at 3661.722 kb on - strand, within Xcc-8004.3785.1 at 3661.758 kb on - strand, within Xcc-8004.3785.1 at 3661.758 kb on - strand, within Xcc-8004.3785.1 at 3661.847 kb on - strand, within Xcc-8004.3785.1 at 3661.929 kb on - strand, within Xcc-8004.3785.1 at 3661.929 kb on - strand, within Xcc-8004.3785.1 at 3661.971 kb on - strand, within Xcc-8004.3785.1 at 3662.113 kb on + strand at 3662.114 kb on - strand at 3662.114 kb on - strand at 3662.354 kb on - strand, within Xcc-8004.3786.1 at 3662.354 kb on - strand, within Xcc-8004.3786.1 at 3662.354 kb on - strand, within Xcc-8004.3786.1 at 3663.000 kb on + strand, within Xcc-8004.3787.1 at 3663.085 kb on - strand, within Xcc-8004.3787.1 at 3663.085 kb on - strand, within Xcc-8004.3787.1 at 3663.085 kb on - strand, within Xcc-8004.3787.1 at 3663.085 kb on - strand, within Xcc-8004.3787.1 at 3663.425 kb on + strand, within Xcc-8004.3787.1 at 3663.425 kb on + strand, within Xcc-8004.3787.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 3,661,207 - +0.1 3,661,207 - -1.7 3,661,207 - -1.0 3,661,566 - Xcc-8004.3785.1 0.36 +0.7 3,661,722 - Xcc-8004.3785.1 0.55 +0.4 3,661,758 - Xcc-8004.3785.1 0.59 +2.0 3,661,758 - Xcc-8004.3785.1 0.59 +0.6 3,661,847 - Xcc-8004.3785.1 0.70 -0.5 3,661,929 - Xcc-8004.3785.1 0.80 +0.0 3,661,929 - Xcc-8004.3785.1 0.80 +1.7 3,661,971 - Xcc-8004.3785.1 0.85 +0.9 3,662,113 + +0.3 3,662,114 - +1.2 3,662,114 - -0.6 3,662,354 - Xcc-8004.3786.1 0.45 -0.1 3,662,354 - Xcc-8004.3786.1 0.45 -0.4 3,662,354 - Xcc-8004.3786.1 0.45 +1.7 3,663,000 + Xcc-8004.3787.1 0.29 -1.1 3,663,085 - Xcc-8004.3787.1 0.36 +1.1 3,663,085 - Xcc-8004.3787.1 0.36 -0.1 3,663,085 - Xcc-8004.3787.1 0.36 +0.5 3,663,085 - Xcc-8004.3787.1 0.36 +0.9 3,663,425 + Xcc-8004.3787.1 0.67 +0.9 3,663,425 + Xcc-8004.3787.1 0.67 -0.4
Or see this region's nucleotide sequence