Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3767.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.3765.1 and Xcc-8004.3766.1 are separated by 48 nucleotidesXcc-8004.3766.1 and Xcc-8004.3767.1 are separated by 64 nucleotidesXcc-8004.3767.1 and Xcc-8004.3769.1 are separated by 43 nucleotidesXcc-8004.3769.1 and Xcc-8004.3770.1 are separated by 108 nucleotides Xcc-8004.3765.1: Xcc-8004.3765.1 - LSU ribosomal protein L19p, at 3,640,830 to 3,641,333 Xcc-8004.3765.1 Xcc-8004.3766.1: Xcc-8004.3766.1 - tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31), at 3,641,382 to 3,642,140 Xcc-8004.3766.1 Xcc-8004.3767.1: Xcc-8004.3767.1 - 16S rRNA processing protein RimM, at 3,642,205 to 3,642,717 Xcc-8004.3767.1 Xcc-8004.3769.1: Xcc-8004.3769.1 - SSU ribosomal protein S16p, at 3,642,761 to 3,643,021 Xcc-8004.3769.1 Xcc-8004.3770.1: Xcc-8004.3770.1 - Aminodeoxychorismate lyase (EC 4.1.3.38), at 3,643,130 to 3,643,927 Xcc-8004.3770.1 Position (kb) 3642 3643Strain fitness (log2 ratio) -3 -2 -1 0 1at 3641.346 kb on - strandat 3641.384 kb on - strandat 3641.384 kb on - strandat 3641.384 kb on - strandat 3643.189 kb on + strandat 3643.189 kb on + strandat 3643.190 kb on - strandat 3643.190 kb on - strandat 3643.190 kb on - strandat 3643.246 kb on + strand, within Xcc-8004.3770.1at 3643.246 kb on + strand, within Xcc-8004.3770.1at 3643.247 kb on - strand, within Xcc-8004.3770.1at 3643.247 kb on - strand, within Xcc-8004.3770.1at 3643.247 kb on - strand, within Xcc-8004.3770.1at 3643.274 kb on + strand, within Xcc-8004.3770.1at 3643.274 kb on + strand, within Xcc-8004.3770.1at 3643.274 kb on + strand, within Xcc-8004.3770.1at 3643.274 kb on + strand, within Xcc-8004.3770.1at 3643.275 kb on - strand, within Xcc-8004.3770.1at 3643.275 kb on - strand, within Xcc-8004.3770.1at 3643.551 kb on + strand, within Xcc-8004.3770.1at 3643.551 kb on + strand, within Xcc-8004.3770.1at 3643.551 kb on + strand, within Xcc-8004.3770.1at 3643.551 kb on + strand, within Xcc-8004.3770.1at 3643.552 kb on - strand, within Xcc-8004.3770.1at 3643.552 kb on - strand, within Xcc-8004.3770.1at 3643.552 kb on - strand, within Xcc-8004.3770.1at 3643.552 kb on - strand, within Xcc-8004.3770.1at 3643.656 kb on + strand, within Xcc-8004.3770.1at 3643.656 kb on + strand, within Xcc-8004.3770.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
remove
3,641,346 - +0.4
3,641,384 - -1.9
3,641,384 - +0.7
3,641,384 - -2.4
3,643,189 + -0.6
3,643,189 + -1.4
3,643,190 - -0.3
3,643,190 - -2.3
3,643,190 - +0.9
3,643,246 + Xcc-8004.3770.1 0.15 -0.3
3,643,246 + Xcc-8004.3770.1 0.15 -1.4
3,643,247 - Xcc-8004.3770.1 0.15 +1.6
3,643,247 - Xcc-8004.3770.1 0.15 -1.9
3,643,247 - Xcc-8004.3770.1 0.15 -0.8
3,643,274 + Xcc-8004.3770.1 0.18 -3.1
3,643,274 + Xcc-8004.3770.1 0.18 -1.0
3,643,274 + Xcc-8004.3770.1 0.18 +0.2
3,643,274 + Xcc-8004.3770.1 0.18 +1.2
3,643,275 - Xcc-8004.3770.1 0.18 -1.8
3,643,275 - Xcc-8004.3770.1 0.18 +1.0
3,643,551 + Xcc-8004.3770.1 0.53 +0.3
3,643,551 + Xcc-8004.3770.1 0.53 +0.2
3,643,551 + Xcc-8004.3770.1 0.53 -1.4
3,643,551 + Xcc-8004.3770.1 0.53 -0.0
3,643,552 - Xcc-8004.3770.1 0.53 -0.6
3,643,552 - Xcc-8004.3770.1 0.53 -0.2
3,643,552 - Xcc-8004.3770.1 0.53 +0.8
3,643,552 - Xcc-8004.3770.1 0.53 -1.1
3,643,656 + Xcc-8004.3770.1 0.66 -1.6
3,643,656 + Xcc-8004.3770.1 0.66 -0.1

Or see this region's nucleotide sequence