Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3527.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3526.1 and Xcc-8004.3527.1 overlap by 4 nucleotidesXcc-8004.3527.1 and Xcc-8004.3528.1 overlap by 2 nucleotides Xcc-8004.3526.1: Xcc-8004.3526.1 - Outer membrane component of tripartite multidrug resistance system, at 3,413,769 to 3,415,283 Xcc-8004.3526.1 Xcc-8004.3527.1: Xcc-8004.3527.1 - Transcriptional regulator, MarR family, at 3,415,280 to 3,415,723 Xcc-8004.3527.1 Xcc-8004.3528.1: Xcc-8004.3528.1 - hypothetical protein, at 3,415,722 to 3,416,708 Xcc-8004.3528.1 Position (kb) 3415 3416Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3414.292 kb on + strand, within Xcc-8004.3526.1at 3414.292 kb on + strand, within Xcc-8004.3526.1at 3414.691 kb on + strand, within Xcc-8004.3526.1at 3414.691 kb on + strand, within Xcc-8004.3526.1at 3414.814 kb on + strand, within Xcc-8004.3526.1at 3414.850 kb on + strand, within Xcc-8004.3526.1at 3414.850 kb on + strand, within Xcc-8004.3526.1at 3414.850 kb on + strand, within Xcc-8004.3526.1at 3414.851 kb on - strand, within Xcc-8004.3526.1at 3414.851 kb on - strand, within Xcc-8004.3526.1at 3414.851 kb on - strand, within Xcc-8004.3526.1at 3414.851 kb on - strand, within Xcc-8004.3526.1at 3414.851 kb on - strand, within Xcc-8004.3526.1at 3414.851 kb on - strand, within Xcc-8004.3526.1at 3414.851 kb on - strand, within Xcc-8004.3526.1at 3415.271 kb on + strandat 3415.271 kb on + strandat 3415.271 kb on + strandat 3415.271 kb on + strandat 3415.271 kb on + strandat 3415.272 kb on - strandat 3415.272 kb on - strandat 3415.272 kb on - strandat 3415.272 kb on - strandat 3415.558 kb on + strand, within Xcc-8004.3527.1at 3415.559 kb on - strand, within Xcc-8004.3527.1at 3415.596 kb on + strand, within Xcc-8004.3527.1at 3415.596 kb on + strand, within Xcc-8004.3527.1at 3415.596 kb on + strand, within Xcc-8004.3527.1at 3415.596 kb on + strand, within Xcc-8004.3527.1at 3415.596 kb on + strand, within Xcc-8004.3527.1at 3415.597 kb on - strand, within Xcc-8004.3527.1at 3415.597 kb on - strand, within Xcc-8004.3527.1at 3415.597 kb on - strand, within Xcc-8004.3527.1at 3415.729 kb on - strandat 3415.745 kb on + strandat 3415.763 kb on + strandat 3415.777 kb on + strandat 3415.777 kb on + strandat 3415.805 kb on + strandat 3415.832 kb on + strand, within Xcc-8004.3528.1at 3415.832 kb on + strand, within Xcc-8004.3528.1at 3415.832 kb on + strand, within Xcc-8004.3528.1at 3415.833 kb on - strand, within Xcc-8004.3528.1at 3416.010 kb on + strand, within Xcc-8004.3528.1at 3416.010 kb on + strand, within Xcc-8004.3528.1at 3416.010 kb on + strand, within Xcc-8004.3528.1at 3416.010 kb on + strand, within Xcc-8004.3528.1at 3416.010 kb on + strand, within Xcc-8004.3528.1at 3416.010 kb on + strand, within Xcc-8004.3528.1at 3416.010 kb on + strand, within Xcc-8004.3528.1at 3416.010 kb on + strand, within Xcc-8004.3528.1at 3416.010 kb on + strand, within Xcc-8004.3528.1at 3416.010 kb on + strand, within Xcc-8004.3528.1at 3416.010 kb on + strand, within Xcc-8004.3528.1at 3416.010 kb on + strand, within Xcc-8004.3528.1at 3416.010 kb on + strand, within Xcc-8004.3528.1at 3416.010 kb on + strand, within Xcc-8004.3528.1at 3416.010 kb on + strand, within Xcc-8004.3528.1at 3416.011 kb on - strand, within Xcc-8004.3528.1at 3416.011 kb on - strand, within Xcc-8004.3528.1at 3416.011 kb on - strand, within Xcc-8004.3528.1at 3416.011 kb on - strand, within Xcc-8004.3528.1at 3416.011 kb on - strand, within Xcc-8004.3528.1at 3416.011 kb on - strand, within Xcc-8004.3528.1at 3416.011 kb on - strand, within Xcc-8004.3528.1at 3416.347 kb on + strand, within Xcc-8004.3528.1at 3416.347 kb on + strand, within Xcc-8004.3528.1at 3416.347 kb on + strand, within Xcc-8004.3528.1at 3416.347 kb on + strand, within Xcc-8004.3528.1at 3416.374 kb on + strand, within Xcc-8004.3528.1at 3416.374 kb on + strand, within Xcc-8004.3528.1at 3416.374 kb on + strand, within Xcc-8004.3528.1at 3416.374 kb on + strand, within Xcc-8004.3528.1at 3416.374 kb on + strand, within Xcc-8004.3528.1at 3416.374 kb on + strand, within Xcc-8004.3528.1at 3416.375 kb on - strand, within Xcc-8004.3528.1at 3416.375 kb on - strand, within Xcc-8004.3528.1at 3416.375 kb on - strand, within Xcc-8004.3528.1at 3416.656 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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3,414,292 + Xcc-8004.3526.1 0.35 -2.1
3,414,292 + Xcc-8004.3526.1 0.35 +1.0
3,414,691 + Xcc-8004.3526.1 0.61 -0.1
3,414,691 + Xcc-8004.3526.1 0.61 -0.8
3,414,814 + Xcc-8004.3526.1 0.69 -1.1
3,414,850 + Xcc-8004.3526.1 0.71 -1.9
3,414,850 + Xcc-8004.3526.1 0.71 +1.3
3,414,850 + Xcc-8004.3526.1 0.71 -0.4
3,414,851 - Xcc-8004.3526.1 0.71 -2.4
3,414,851 - Xcc-8004.3526.1 0.71 +0.6
3,414,851 - Xcc-8004.3526.1 0.71 -0.7
3,414,851 - Xcc-8004.3526.1 0.71 -0.6
3,414,851 - Xcc-8004.3526.1 0.71 +0.9
3,414,851 - Xcc-8004.3526.1 0.71 -0.8
3,414,851 - Xcc-8004.3526.1 0.71 +0.9
3,415,271 + +0.5
3,415,271 + +0.2
3,415,271 + +1.5
3,415,271 + -0.1
3,415,271 + +1.5
3,415,272 - +1.5
3,415,272 - +1.1
3,415,272 - +1.9
3,415,272 - +5.0
3,415,558 + Xcc-8004.3527.1 0.63 -2.2
3,415,559 - Xcc-8004.3527.1 0.63 +0.5
3,415,596 + Xcc-8004.3527.1 0.71 +1.7
3,415,596 + Xcc-8004.3527.1 0.71 +1.8
3,415,596 + Xcc-8004.3527.1 0.71 -0.4
3,415,596 + Xcc-8004.3527.1 0.71 -2.2
3,415,596 + Xcc-8004.3527.1 0.71 -1.4
3,415,597 - Xcc-8004.3527.1 0.71 +1.6
3,415,597 - Xcc-8004.3527.1 0.71 +0.8
3,415,597 - Xcc-8004.3527.1 0.71 +0.7
3,415,729 - -1.4
3,415,745 + +3.4
3,415,763 + -1.2
3,415,777 + -1.0
3,415,777 + +0.1
3,415,805 + +1.0
3,415,832 + Xcc-8004.3528.1 0.11 -0.8
3,415,832 + Xcc-8004.3528.1 0.11 -0.0
3,415,832 + Xcc-8004.3528.1 0.11 +2.2
3,415,833 - Xcc-8004.3528.1 0.11 +1.8
3,416,010 + Xcc-8004.3528.1 0.29 -0.5
3,416,010 + Xcc-8004.3528.1 0.29 +0.3
3,416,010 + Xcc-8004.3528.1 0.29 -0.4
3,416,010 + Xcc-8004.3528.1 0.29 +1.3
3,416,010 + Xcc-8004.3528.1 0.29 -1.9
3,416,010 + Xcc-8004.3528.1 0.29 +0.6
3,416,010 + Xcc-8004.3528.1 0.29 +0.4
3,416,010 + Xcc-8004.3528.1 0.29 -0.6
3,416,010 + Xcc-8004.3528.1 0.29 -0.9
3,416,010 + Xcc-8004.3528.1 0.29 -2.6
3,416,010 + Xcc-8004.3528.1 0.29 +0.6
3,416,010 + Xcc-8004.3528.1 0.29 +0.5
3,416,010 + Xcc-8004.3528.1 0.29 -1.3
3,416,010 + Xcc-8004.3528.1 0.29 -0.6
3,416,010 + Xcc-8004.3528.1 0.29 +1.0
3,416,011 - Xcc-8004.3528.1 0.29 +1.2
3,416,011 - Xcc-8004.3528.1 0.29 -0.7
3,416,011 - Xcc-8004.3528.1 0.29 +0.5
3,416,011 - Xcc-8004.3528.1 0.29 -1.3
3,416,011 - Xcc-8004.3528.1 0.29 +1.1
3,416,011 - Xcc-8004.3528.1 0.29 -0.1
3,416,011 - Xcc-8004.3528.1 0.29 +1.0
3,416,347 + Xcc-8004.3528.1 0.63 +1.1
3,416,347 + Xcc-8004.3528.1 0.63 +1.6
3,416,347 + Xcc-8004.3528.1 0.63 -0.0
3,416,347 + Xcc-8004.3528.1 0.63 +1.9
3,416,374 + Xcc-8004.3528.1 0.66 +1.3
3,416,374 + Xcc-8004.3528.1 0.66 -2.4
3,416,374 + Xcc-8004.3528.1 0.66 +1.4
3,416,374 + Xcc-8004.3528.1 0.66 +0.5
3,416,374 + Xcc-8004.3528.1 0.66 +0.8
3,416,374 + Xcc-8004.3528.1 0.66 +1.0
3,416,375 - Xcc-8004.3528.1 0.66 +0.3
3,416,375 - Xcc-8004.3528.1 0.66 -0.2
3,416,375 - Xcc-8004.3528.1 0.66 -1.3
3,416,656 - -1.3

Or see this region's nucleotide sequence