Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3389.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3388.1 and Xcc-8004.3389.1 are separated by 253 nucleotidesXcc-8004.3389.1 and Xcc-8004.3390.1 are separated by 0 nucleotidesXcc-8004.3390.1 and Xcc-8004.3391.1 overlap by 8 nucleotides Xcc-8004.3388.1: Xcc-8004.3388.1 - FIG01212492: hypothetical protein, at 3,282,422 to 3,283,258 Xcc-8004.3388.1 Xcc-8004.3389.1: Xcc-8004.3389.1 - Nucleoprotein/polynucleotide-associated enzyme, at 3,283,512 to 3,284,207 Xcc-8004.3389.1 Xcc-8004.3390.1: Xcc-8004.3390.1 - Protein SlyX, at 3,284,208 to 3,284,444 Xcc-8004.3390.1 Xcc-8004.3391.1: Xcc-8004.3391.1 - hypothetical protein, at 3,284,437 to 3,285,783 Xcc-8004.3391.1 Position (kb) 3283 3284 3285Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 3282.591 kb on + strand, within Xcc-8004.3388.1at 3282.591 kb on + strand, within Xcc-8004.3388.1at 3282.591 kb on + strand, within Xcc-8004.3388.1at 3282.591 kb on + strand, within Xcc-8004.3388.1at 3282.591 kb on + strand, within Xcc-8004.3388.1at 3282.591 kb on + strand, within Xcc-8004.3388.1at 3282.591 kb on + strand, within Xcc-8004.3388.1at 3282.591 kb on + strand, within Xcc-8004.3388.1at 3282.591 kb on + strand, within Xcc-8004.3388.1at 3282.591 kb on + strand, within Xcc-8004.3388.1at 3282.591 kb on + strand, within Xcc-8004.3388.1at 3282.591 kb on + strand, within Xcc-8004.3388.1at 3282.591 kb on + strand, within Xcc-8004.3388.1at 3282.591 kb on + strand, within Xcc-8004.3388.1at 3282.591 kb on + strand, within Xcc-8004.3388.1at 3282.592 kb on - strand, within Xcc-8004.3388.1at 3282.592 kb on - strand, within Xcc-8004.3388.1at 3282.592 kb on - strand, within Xcc-8004.3388.1at 3282.592 kb on - strand, within Xcc-8004.3388.1at 3282.592 kb on - strand, within Xcc-8004.3388.1at 3282.592 kb on - strand, within Xcc-8004.3388.1at 3282.592 kb on - strand, within Xcc-8004.3388.1at 3282.592 kb on - strand, within Xcc-8004.3388.1at 3282.624 kb on + strand, within Xcc-8004.3388.1at 3282.624 kb on + strand, within Xcc-8004.3388.1at 3282.624 kb on + strand, within Xcc-8004.3388.1at 3282.624 kb on + strand, within Xcc-8004.3388.1at 3282.625 kb on - strand, within Xcc-8004.3388.1at 3282.625 kb on - strand, within Xcc-8004.3388.1at 3282.625 kb on - strand, within Xcc-8004.3388.1at 3282.625 kb on - strand, within Xcc-8004.3388.1at 3282.625 kb on - strand, within Xcc-8004.3388.1at 3282.625 kb on - strand, within Xcc-8004.3388.1at 3282.625 kb on - strand, within Xcc-8004.3388.1at 3282.669 kb on + strand, within Xcc-8004.3388.1at 3282.669 kb on + strand, within Xcc-8004.3388.1at 3282.669 kb on + strand, within Xcc-8004.3388.1at 3282.669 kb on + strand, within Xcc-8004.3388.1at 3282.669 kb on + strand, within Xcc-8004.3388.1at 3282.669 kb on + strand, within Xcc-8004.3388.1at 3282.669 kb on + strand, within Xcc-8004.3388.1at 3282.669 kb on + strand, within Xcc-8004.3388.1at 3282.669 kb on + strand, within Xcc-8004.3388.1at 3282.669 kb on + strand, within Xcc-8004.3388.1at 3282.669 kb on + strand, within Xcc-8004.3388.1at 3282.670 kb on - strand, within Xcc-8004.3388.1at 3282.670 kb on - strand, within Xcc-8004.3388.1at 3282.670 kb on - strand, within Xcc-8004.3388.1at 3282.670 kb on - strand, within Xcc-8004.3388.1at 3282.670 kb on - strand, within Xcc-8004.3388.1at 3282.670 kb on - strand, within Xcc-8004.3388.1at 3282.670 kb on - strand, within Xcc-8004.3388.1at 3282.670 kb on - strand, within Xcc-8004.3388.1at 3282.670 kb on - strand, within Xcc-8004.3388.1at 3282.670 kb on - strand, within Xcc-8004.3388.1at 3282.670 kb on - strand, within Xcc-8004.3388.1at 3282.670 kb on - strand, within Xcc-8004.3388.1at 3282.678 kb on + strand, within Xcc-8004.3388.1at 3282.678 kb on + strand, within Xcc-8004.3388.1at 3282.679 kb on - strand, within Xcc-8004.3388.1at 3282.679 kb on - strand, within Xcc-8004.3388.1at 3282.679 kb on - strand, within Xcc-8004.3388.1at 3282.679 kb on - strand, within Xcc-8004.3388.1at 3282.679 kb on - strand, within Xcc-8004.3388.1at 3282.679 kb on - strand, within Xcc-8004.3388.1at 3282.704 kb on + strand, within Xcc-8004.3388.1at 3282.704 kb on + strand, within Xcc-8004.3388.1at 3282.704 kb on + strand, within Xcc-8004.3388.1at 3282.705 kb on - strand, within Xcc-8004.3388.1at 3282.705 kb on - strand, within Xcc-8004.3388.1at 3282.780 kb on + strand, within Xcc-8004.3388.1at 3282.781 kb on - strand, within Xcc-8004.3388.1at 3282.781 kb on - strand, within Xcc-8004.3388.1at 3282.897 kb on + strand, within Xcc-8004.3388.1at 3282.897 kb on + strand, within Xcc-8004.3388.1at 3282.897 kb on + strand, within Xcc-8004.3388.1at 3282.897 kb on + strand, within Xcc-8004.3388.1at 3282.897 kb on + strand, within Xcc-8004.3388.1at 3282.897 kb on + strand, within Xcc-8004.3388.1at 3282.897 kb on + strand, within Xcc-8004.3388.1at 3282.897 kb on + strand, within Xcc-8004.3388.1at 3282.898 kb on - strand, within Xcc-8004.3388.1at 3282.898 kb on - strand, within Xcc-8004.3388.1at 3282.898 kb on - strand, within Xcc-8004.3388.1at 3282.898 kb on - strand, within Xcc-8004.3388.1at 3282.898 kb on - strand, within Xcc-8004.3388.1at 3282.898 kb on - strand, within Xcc-8004.3388.1at 3282.898 kb on - strand, within Xcc-8004.3388.1at 3282.898 kb on - strand, within Xcc-8004.3388.1at 3282.966 kb on + strand, within Xcc-8004.3388.1at 3282.967 kb on - strand, within Xcc-8004.3388.1at 3282.967 kb on - strand, within Xcc-8004.3388.1at 3283.159 kb on + strand, within Xcc-8004.3388.1at 3283.159 kb on + strand, within Xcc-8004.3388.1at 3283.160 kb on - strand, within Xcc-8004.3388.1at 3283.160 kb on - strand, within Xcc-8004.3388.1at 3283.160 kb on - strand, within Xcc-8004.3388.1at 3283.203 kb on + strandat 3283.203 kb on + strandat 3283.203 kb on + strandat 3283.203 kb on + strandat 3283.203 kb on + strandat 3283.203 kb on + strandat 3283.203 kb on + strandat 3283.203 kb on + strandat 3283.204 kb on - strandat 3283.204 kb on - strandat 3283.204 kb on - strandat 3283.204 kb on - strandat 3283.358 kb on + strandat 3283.358 kb on + strandat 3283.359 kb on - strandat 3283.359 kb on - strandat 3283.367 kb on + strandat 3283.367 kb on + strandat 3283.413 kb on - strandat 3283.540 kb on + strandat 3283.541 kb on - strandat 3283.541 kb on - strandat 3283.541 kb on - strandat 3283.541 kb on - strandat 3283.541 kb on - strandat 3283.556 kb on - strandat 3283.657 kb on + strand, within Xcc-8004.3389.1at 3283.657 kb on + strand, within Xcc-8004.3389.1at 3283.726 kb on + strand, within Xcc-8004.3389.1at 3283.726 kb on + strand, within Xcc-8004.3389.1at 3283.726 kb on + strand, within Xcc-8004.3389.1at 3283.726 kb on + strand, within Xcc-8004.3389.1at 3283.726 kb on + strand, within Xcc-8004.3389.1at 3283.726 kb on + strand, within Xcc-8004.3389.1at 3283.726 kb on + strand, within Xcc-8004.3389.1at 3283.726 kb on + strand, within Xcc-8004.3389.1at 3283.726 kb on + strand, within Xcc-8004.3389.1at 3283.726 kb on + strand, within Xcc-8004.3389.1at 3283.726 kb on + strand, within Xcc-8004.3389.1at 3283.726 kb on + strand, within Xcc-8004.3389.1at 3283.726 kb on + strand, within Xcc-8004.3389.1at 3283.727 kb on - strand, within Xcc-8004.3389.1at 3283.727 kb on - strand, within Xcc-8004.3389.1at 3283.727 kb on - strand, within Xcc-8004.3389.1at 3283.727 kb on - strand, within Xcc-8004.3389.1at 3283.727 kb on - strand, within Xcc-8004.3389.1at 3283.727 kb on - strand, within Xcc-8004.3389.1at 3283.750 kb on + strand, within Xcc-8004.3389.1at 3283.912 kb on + strand, within Xcc-8004.3389.1at 3283.913 kb on - strand, within Xcc-8004.3389.1at 3284.175 kb on + strandat 3284.175 kb on + strandat 3284.175 kb on + strandat 3284.175 kb on + strandat 3284.175 kb on + strandat 3284.175 kb on + strandat 3284.176 kb on - strandat 3284.176 kb on - strandat 3284.176 kb on - strandat 3284.176 kb on - strandat 3284.176 kb on - strandat 3284.176 kb on - strandat 3284.176 kb on - strandat 3284.212 kb on + strandat 3284.213 kb on - strandat 3284.213 kb on - strandat 3284.510 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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3,282,591 + Xcc-8004.3388.1 0.20 +0.6
3,282,591 + Xcc-8004.3388.1 0.20 +0.6
3,282,591 + Xcc-8004.3388.1 0.20 +0.6
3,282,591 + Xcc-8004.3388.1 0.20 -0.1
3,282,591 + Xcc-8004.3388.1 0.20 -3.1
3,282,591 + Xcc-8004.3388.1 0.20 -0.3
3,282,591 + Xcc-8004.3388.1 0.20 +1.4
3,282,591 + Xcc-8004.3388.1 0.20 -0.7
3,282,591 + Xcc-8004.3388.1 0.20 +1.0
3,282,591 + Xcc-8004.3388.1 0.20 +1.8
3,282,591 + Xcc-8004.3388.1 0.20 -1.1
3,282,591 + Xcc-8004.3388.1 0.20 -1.8
3,282,591 + Xcc-8004.3388.1 0.20 +0.5
3,282,591 + Xcc-8004.3388.1 0.20 +1.6
3,282,591 + Xcc-8004.3388.1 0.20 -1.3
3,282,592 - Xcc-8004.3388.1 0.20 -0.6
3,282,592 - Xcc-8004.3388.1 0.20 +0.9
3,282,592 - Xcc-8004.3388.1 0.20 +1.7
3,282,592 - Xcc-8004.3388.1 0.20 -0.4
3,282,592 - Xcc-8004.3388.1 0.20 +1.6
3,282,592 - Xcc-8004.3388.1 0.20 -1.7
3,282,592 - Xcc-8004.3388.1 0.20 +0.3
3,282,592 - Xcc-8004.3388.1 0.20 +1.0
3,282,624 + Xcc-8004.3388.1 0.24 -1.4
3,282,624 + Xcc-8004.3388.1 0.24 +0.3
3,282,624 + Xcc-8004.3388.1 0.24 +1.0
3,282,624 + Xcc-8004.3388.1 0.24 -0.1
3,282,625 - Xcc-8004.3388.1 0.24 -3.0
3,282,625 - Xcc-8004.3388.1 0.24 +2.3
3,282,625 - Xcc-8004.3388.1 0.24 -1.7
3,282,625 - Xcc-8004.3388.1 0.24 -1.1
3,282,625 - Xcc-8004.3388.1 0.24 -1.8
3,282,625 - Xcc-8004.3388.1 0.24 -0.2
3,282,625 - Xcc-8004.3388.1 0.24 -1.6
3,282,669 + Xcc-8004.3388.1 0.30 -0.4
3,282,669 + Xcc-8004.3388.1 0.30 +2.6
3,282,669 + Xcc-8004.3388.1 0.30 +1.8
3,282,669 + Xcc-8004.3388.1 0.30 -0.2
3,282,669 + Xcc-8004.3388.1 0.30 -0.5
3,282,669 + Xcc-8004.3388.1 0.30 -1.6
3,282,669 + Xcc-8004.3388.1 0.30 +1.3
3,282,669 + Xcc-8004.3388.1 0.30 +0.3
3,282,669 + Xcc-8004.3388.1 0.30 -1.2
3,282,669 + Xcc-8004.3388.1 0.30 -0.2
3,282,669 + Xcc-8004.3388.1 0.30 +0.0
3,282,670 - Xcc-8004.3388.1 0.30 +1.2
3,282,670 - Xcc-8004.3388.1 0.30 +0.3
3,282,670 - Xcc-8004.3388.1 0.30 -3.7
3,282,670 - Xcc-8004.3388.1 0.30 -0.5
3,282,670 - Xcc-8004.3388.1 0.30 +3.5
3,282,670 - Xcc-8004.3388.1 0.30 -0.4
3,282,670 - Xcc-8004.3388.1 0.30 -0.5
3,282,670 - Xcc-8004.3388.1 0.30 -1.5
3,282,670 - Xcc-8004.3388.1 0.30 -0.4
3,282,670 - Xcc-8004.3388.1 0.30 +0.7
3,282,670 - Xcc-8004.3388.1 0.30 +0.5
3,282,670 - Xcc-8004.3388.1 0.30 -0.1
3,282,678 + Xcc-8004.3388.1 0.31 +0.1
3,282,678 + Xcc-8004.3388.1 0.31 -1.5
3,282,679 - Xcc-8004.3388.1 0.31 +0.8
3,282,679 - Xcc-8004.3388.1 0.31 +1.3
3,282,679 - Xcc-8004.3388.1 0.31 +1.3
3,282,679 - Xcc-8004.3388.1 0.31 -0.7
3,282,679 - Xcc-8004.3388.1 0.31 +1.7
3,282,679 - Xcc-8004.3388.1 0.31 +0.9
3,282,704 + Xcc-8004.3388.1 0.34 +1.5
3,282,704 + Xcc-8004.3388.1 0.34 -1.9
3,282,704 + Xcc-8004.3388.1 0.34 -0.8
3,282,705 - Xcc-8004.3388.1 0.34 -0.7
3,282,705 - Xcc-8004.3388.1 0.34 +0.9
3,282,780 + Xcc-8004.3388.1 0.43 +0.1
3,282,781 - Xcc-8004.3388.1 0.43 +1.2
3,282,781 - Xcc-8004.3388.1 0.43 +0.3
3,282,897 + Xcc-8004.3388.1 0.57 +1.1
3,282,897 + Xcc-8004.3388.1 0.57 +0.7
3,282,897 + Xcc-8004.3388.1 0.57 -1.3
3,282,897 + Xcc-8004.3388.1 0.57 -0.2
3,282,897 + Xcc-8004.3388.1 0.57 +0.9
3,282,897 + Xcc-8004.3388.1 0.57 -0.1
3,282,897 + Xcc-8004.3388.1 0.57 -2.3
3,282,897 + Xcc-8004.3388.1 0.57 -0.0
3,282,898 - Xcc-8004.3388.1 0.57 -1.9
3,282,898 - Xcc-8004.3388.1 0.57 +1.0
3,282,898 - Xcc-8004.3388.1 0.57 +0.4
3,282,898 - Xcc-8004.3388.1 0.57 -1.0
3,282,898 - Xcc-8004.3388.1 0.57 +0.8
3,282,898 - Xcc-8004.3388.1 0.57 +0.7
3,282,898 - Xcc-8004.3388.1 0.57 -1.1
3,282,898 - Xcc-8004.3388.1 0.57 +0.4
3,282,966 + Xcc-8004.3388.1 0.65 -1.7
3,282,967 - Xcc-8004.3388.1 0.65 +1.2
3,282,967 - Xcc-8004.3388.1 0.65 -0.2
3,283,159 + Xcc-8004.3388.1 0.88 -0.2
3,283,159 + Xcc-8004.3388.1 0.88 -0.2
3,283,160 - Xcc-8004.3388.1 0.88 -1.3
3,283,160 - Xcc-8004.3388.1 0.88 -0.4
3,283,160 - Xcc-8004.3388.1 0.88 -0.2
3,283,203 + +1.0
3,283,203 + +0.5
3,283,203 + -1.2
3,283,203 + +0.4
3,283,203 + +1.9
3,283,203 + +0.9
3,283,203 + +1.2
3,283,203 + +1.5
3,283,204 - -0.6
3,283,204 - -1.1
3,283,204 - -0.2
3,283,204 - +0.5
3,283,358 + +1.5
3,283,358 + -1.0
3,283,359 - -1.1
3,283,359 - +0.1
3,283,367 + +0.3
3,283,367 + -1.6
3,283,413 - -0.1
3,283,540 + -0.4
3,283,541 - +0.9
3,283,541 - -0.9
3,283,541 - -0.4
3,283,541 - +2.0
3,283,541 - +1.3
3,283,556 - +0.6
3,283,657 + Xcc-8004.3389.1 0.21 -0.8
3,283,657 + Xcc-8004.3389.1 0.21 -1.4
3,283,726 + Xcc-8004.3389.1 0.31 +6.7
3,283,726 + Xcc-8004.3389.1 0.31 +1.9
3,283,726 + Xcc-8004.3389.1 0.31 +1.6
3,283,726 + Xcc-8004.3389.1 0.31 +1.5
3,283,726 + Xcc-8004.3389.1 0.31 +3.2
3,283,726 + Xcc-8004.3389.1 0.31 +0.8
3,283,726 + Xcc-8004.3389.1 0.31 -2.3
3,283,726 + Xcc-8004.3389.1 0.31 +0.9
3,283,726 + Xcc-8004.3389.1 0.31 +0.2
3,283,726 + Xcc-8004.3389.1 0.31 +1.6
3,283,726 + Xcc-8004.3389.1 0.31 +0.3
3,283,726 + Xcc-8004.3389.1 0.31 -0.9
3,283,726 + Xcc-8004.3389.1 0.31 +0.1
3,283,727 - Xcc-8004.3389.1 0.31 -2.0
3,283,727 - Xcc-8004.3389.1 0.31 +2.1
3,283,727 - Xcc-8004.3389.1 0.31 +2.2
3,283,727 - Xcc-8004.3389.1 0.31 -1.2
3,283,727 - Xcc-8004.3389.1 0.31 -1.7
3,283,727 - Xcc-8004.3389.1 0.31 +2.3
3,283,750 + Xcc-8004.3389.1 0.34 +3.4
3,283,912 + Xcc-8004.3389.1 0.57 +0.6
3,283,913 - Xcc-8004.3389.1 0.58 +0.7
3,284,175 + +0.6
3,284,175 + -0.0
3,284,175 + -0.5
3,284,175 + +2.2
3,284,175 + -1.1
3,284,175 + +1.5
3,284,176 - +0.7
3,284,176 - +0.7
3,284,176 - +1.0
3,284,176 - +2.6
3,284,176 - -0.6
3,284,176 - +0.4
3,284,176 - -0.1
3,284,212 + +0.9
3,284,213 - -0.4
3,284,213 - -0.8
3,284,510 + +1.1

Or see this region's nucleotide sequence