Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3297.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3296.1 and Xcc-8004.3297.1 are separated by 34 nucleotidesXcc-8004.3297.1 and Xcc-8004.3298.1 are separated by 0 nucleotides Xcc-8004.3296.1: Xcc-8004.3296.1 - Histidine ammonia-lyase (EC 4.3.1.3), at 3,193,729 to 3,195,270 Xcc-8004.3296.1 Xcc-8004.3297.1: Xcc-8004.3297.1 - N-formylglutamate deformylase (EC 3.5.1.68), at 3,195,305 to 3,196,147 Xcc-8004.3297.1 Xcc-8004.3298.1: Xcc-8004.3298.1 - Urocanate hydratase (EC 4.2.1.49), at 3,196,148 to 3,197,830 Xcc-8004.3298.1 Position (kb) 3195 3196 3197Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3194.569 kb on + strand, within Xcc-8004.3296.1at 3194.930 kb on - strand, within Xcc-8004.3296.1at 3194.930 kb on - strand, within Xcc-8004.3296.1at 3195.169 kb on + strandat 3195.169 kb on + strandat 3195.169 kb on + strandat 3195.170 kb on - strandat 3195.170 kb on - strandat 3195.170 kb on - strandat 3195.170 kb on - strandat 3195.170 kb on - strandat 3195.242 kb on + strandat 3195.243 kb on - strandat 3195.243 kb on - strandat 3195.243 kb on - strandat 3195.464 kb on + strand, within Xcc-8004.3297.1at 3195.465 kb on - strand, within Xcc-8004.3297.1at 3195.620 kb on + strand, within Xcc-8004.3297.1at 3195.621 kb on - strand, within Xcc-8004.3297.1at 3195.687 kb on - strand, within Xcc-8004.3297.1at 3195.749 kb on + strand, within Xcc-8004.3297.1at 3195.749 kb on + strand, within Xcc-8004.3297.1at 3195.750 kb on - strand, within Xcc-8004.3297.1at 3195.750 kb on - strand, within Xcc-8004.3297.1at 3195.750 kb on - strand, within Xcc-8004.3297.1at 3195.750 kb on - strand, within Xcc-8004.3297.1at 3195.941 kb on + strand, within Xcc-8004.3297.1at 3195.998 kb on + strand, within Xcc-8004.3297.1at 3195.998 kb on + strand, within Xcc-8004.3297.1at 3196.081 kb on - strandat 3196.522 kb on + strand, within Xcc-8004.3298.1at 3196.523 kb on - strand, within Xcc-8004.3298.1at 3196.541 kb on + strand, within Xcc-8004.3298.1at 3196.541 kb on + strand, within Xcc-8004.3298.1at 3196.541 kb on + strand, within Xcc-8004.3298.1at 3196.541 kb on + strand, within Xcc-8004.3298.1at 3196.541 kb on + strand, within Xcc-8004.3298.1at 3196.542 kb on - strand, within Xcc-8004.3298.1at 3196.542 kb on - strand, within Xcc-8004.3298.1at 3196.542 kb on - strand, within Xcc-8004.3298.1at 3196.542 kb on - strand, within Xcc-8004.3298.1at 3196.542 kb on - strand, within Xcc-8004.3298.1at 3196.571 kb on + strand, within Xcc-8004.3298.1at 3196.571 kb on + strand, within Xcc-8004.3298.1at 3196.571 kb on + strand, within Xcc-8004.3298.1at 3196.571 kb on + strand, within Xcc-8004.3298.1at 3196.571 kb on + strand, within Xcc-8004.3298.1at 3196.571 kb on + strand, within Xcc-8004.3298.1at 3196.572 kb on - strand, within Xcc-8004.3298.1at 3196.572 kb on - strand, within Xcc-8004.3298.1at 3196.572 kb on - strand, within Xcc-8004.3298.1at 3196.604 kb on + strand, within Xcc-8004.3298.1at 3196.604 kb on + strand, within Xcc-8004.3298.1at 3196.605 kb on - strand, within Xcc-8004.3298.1at 3196.605 kb on - strand, within Xcc-8004.3298.1at 3196.605 kb on - strand, within Xcc-8004.3298.1at 3196.605 kb on - strand, within Xcc-8004.3298.1at 3196.605 kb on - strand, within Xcc-8004.3298.1at 3196.759 kb on + strand, within Xcc-8004.3298.1at 3196.759 kb on + strand, within Xcc-8004.3298.1at 3196.759 kb on + strand, within Xcc-8004.3298.1at 3196.759 kb on + strand, within Xcc-8004.3298.1at 3196.760 kb on - strand, within Xcc-8004.3298.1at 3196.760 kb on - strand, within Xcc-8004.3298.1at 3196.760 kb on - strand, within Xcc-8004.3298.1at 3196.760 kb on - strand, within Xcc-8004.3298.1at 3196.788 kb on - strand, within Xcc-8004.3298.1at 3197.058 kb on - strand, within Xcc-8004.3298.1at 3197.123 kb on + strand, within Xcc-8004.3298.1at 3197.123 kb on + strand, within Xcc-8004.3298.1at 3197.124 kb on - strand, within Xcc-8004.3298.1at 3197.124 kb on - strand, within Xcc-8004.3298.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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3,194,569 + Xcc-8004.3296.1 0.54 +0.1
3,194,930 - Xcc-8004.3296.1 0.78 -0.1
3,194,930 - Xcc-8004.3296.1 0.78 +0.2
3,195,169 + +3.0
3,195,169 + +1.0
3,195,169 + +1.9
3,195,170 - +0.9
3,195,170 - +1.8
3,195,170 - +1.0
3,195,170 - +0.7
3,195,170 - -1.1
3,195,242 + +0.8
3,195,243 - +1.5
3,195,243 - -0.4
3,195,243 - +1.9
3,195,464 + Xcc-8004.3297.1 0.19 +2.3
3,195,465 - Xcc-8004.3297.1 0.19 +1.3
3,195,620 + Xcc-8004.3297.1 0.37 +1.6
3,195,621 - Xcc-8004.3297.1 0.37 +0.9
3,195,687 - Xcc-8004.3297.1 0.45 +0.8
3,195,749 + Xcc-8004.3297.1 0.53 -1.4
3,195,749 + Xcc-8004.3297.1 0.53 +1.7
3,195,750 - Xcc-8004.3297.1 0.53 +1.0
3,195,750 - Xcc-8004.3297.1 0.53 +2.2
3,195,750 - Xcc-8004.3297.1 0.53 +2.1
3,195,750 - Xcc-8004.3297.1 0.53 +1.0
3,195,941 + Xcc-8004.3297.1 0.75 +1.6
3,195,998 + Xcc-8004.3297.1 0.82 +3.2
3,195,998 + Xcc-8004.3297.1 0.82 +2.3
3,196,081 - +2.0
3,196,522 + Xcc-8004.3298.1 0.22 +0.9
3,196,523 - Xcc-8004.3298.1 0.22 +0.3
3,196,541 + Xcc-8004.3298.1 0.23 +0.7
3,196,541 + Xcc-8004.3298.1 0.23 -2.2
3,196,541 + Xcc-8004.3298.1 0.23 +1.0
3,196,541 + Xcc-8004.3298.1 0.23 -0.1
3,196,541 + Xcc-8004.3298.1 0.23 +1.0
3,196,542 - Xcc-8004.3298.1 0.23 -2.0
3,196,542 - Xcc-8004.3298.1 0.23 -3.3
3,196,542 - Xcc-8004.3298.1 0.23 -0.1
3,196,542 - Xcc-8004.3298.1 0.23 +0.5
3,196,542 - Xcc-8004.3298.1 0.23 -0.0
3,196,571 + Xcc-8004.3298.1 0.25 +0.6
3,196,571 + Xcc-8004.3298.1 0.25 +1.4
3,196,571 + Xcc-8004.3298.1 0.25 -2.4
3,196,571 + Xcc-8004.3298.1 0.25 +0.5
3,196,571 + Xcc-8004.3298.1 0.25 +0.1
3,196,571 + Xcc-8004.3298.1 0.25 +0.7
3,196,572 - Xcc-8004.3298.1 0.25 +2.7
3,196,572 - Xcc-8004.3298.1 0.25 -3.4
3,196,572 - Xcc-8004.3298.1 0.25 -1.1
3,196,604 + Xcc-8004.3298.1 0.27 +0.6
3,196,604 + Xcc-8004.3298.1 0.27 +1.8
3,196,605 - Xcc-8004.3298.1 0.27 +0.2
3,196,605 - Xcc-8004.3298.1 0.27 -1.4
3,196,605 - Xcc-8004.3298.1 0.27 +0.4
3,196,605 - Xcc-8004.3298.1 0.27 +0.2
3,196,605 - Xcc-8004.3298.1 0.27 -2.0
3,196,759 + Xcc-8004.3298.1 0.36 +1.4
3,196,759 + Xcc-8004.3298.1 0.36 +0.5
3,196,759 + Xcc-8004.3298.1 0.36 -0.9
3,196,759 + Xcc-8004.3298.1 0.36 +0.3
3,196,760 - Xcc-8004.3298.1 0.36 +2.2
3,196,760 - Xcc-8004.3298.1 0.36 +1.0
3,196,760 - Xcc-8004.3298.1 0.36 +0.4
3,196,760 - Xcc-8004.3298.1 0.36 +0.1
3,196,788 - Xcc-8004.3298.1 0.38 +0.1
3,197,058 - Xcc-8004.3298.1 0.54 +1.3
3,197,123 + Xcc-8004.3298.1 0.58 -1.4
3,197,123 + Xcc-8004.3298.1 0.58 -0.2
3,197,124 - Xcc-8004.3298.1 0.58 +0.8
3,197,124 - Xcc-8004.3298.1 0.58 +0.5

Or see this region's nucleotide sequence