Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3294.1 and Xcc-8004.3295.1 are separated by 60 nucleotides Xcc-8004.3295.1 and Xcc-8004.3296.1 are separated by 12 nucleotides
Xcc-8004.3294.1: Xcc-8004.3294.1 - Formiminoglutamic iminohydrolase (EC 3.5.3.13), at 3,191,080 to 3,192,450
Xcc-8004.3294.1
Xcc-8004.3295.1: Xcc-8004.3295.1 - Imidazolonepropionase (EC 3.5.2.7), at 3,192,511 to 3,193,716
Xcc-8004.3295.1
Xcc-8004.3296.1: Xcc-8004.3296.1 - Histidine ammonia-lyase (EC 4.3.1.3), at 3,193,729 to 3,195,270
Xcc-8004.3296.1
Position (kb) 3192
3193
3194 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 3191.675 kb on + strand, within Xcc-8004.3294.1 at 3191.675 kb on + strand, within Xcc-8004.3294.1 at 3191.675 kb on + strand, within Xcc-8004.3294.1 at 3191.675 kb on + strand, within Xcc-8004.3294.1 at 3191.745 kb on + strand, within Xcc-8004.3294.1 at 3191.901 kb on + strand, within Xcc-8004.3294.1 at 3191.963 kb on + strand, within Xcc-8004.3294.1 at 3191.963 kb on + strand, within Xcc-8004.3294.1 at 3191.964 kb on - strand, within Xcc-8004.3294.1 at 3191.964 kb on - strand, within Xcc-8004.3294.1 at 3192.047 kb on + strand, within Xcc-8004.3294.1 at 3192.048 kb on - strand, within Xcc-8004.3294.1 at 3192.077 kb on + strand, within Xcc-8004.3294.1 at 3192.077 kb on + strand, within Xcc-8004.3294.1 at 3192.078 kb on - strand, within Xcc-8004.3294.1 at 3192.078 kb on - strand, within Xcc-8004.3294.1 at 3192.078 kb on - strand, within Xcc-8004.3294.1 at 3192.125 kb on + strand, within Xcc-8004.3294.1 at 3192.125 kb on + strand, within Xcc-8004.3294.1 at 3192.125 kb on + strand, within Xcc-8004.3294.1 at 3192.125 kb on + strand, within Xcc-8004.3294.1 at 3192.125 kb on + strand, within Xcc-8004.3294.1 at 3192.125 kb on + strand, within Xcc-8004.3294.1 at 3192.126 kb on - strand, within Xcc-8004.3294.1 at 3192.126 kb on - strand, within Xcc-8004.3294.1 at 3192.126 kb on - strand, within Xcc-8004.3294.1 at 3192.126 kb on - strand, within Xcc-8004.3294.1 at 3192.126 kb on - strand, within Xcc-8004.3294.1 at 3192.126 kb on - strand, within Xcc-8004.3294.1 at 3192.126 kb on - strand, within Xcc-8004.3294.1 at 3192.126 kb on - strand, within Xcc-8004.3294.1 at 3192.126 kb on - strand, within Xcc-8004.3294.1 at 3192.126 kb on - strand, within Xcc-8004.3294.1 at 3192.126 kb on - strand, within Xcc-8004.3294.1 at 3192.182 kb on + strand, within Xcc-8004.3294.1 at 3192.182 kb on + strand, within Xcc-8004.3294.1 at 3192.182 kb on + strand, within Xcc-8004.3294.1 at 3192.182 kb on + strand, within Xcc-8004.3294.1 at 3192.182 kb on + strand, within Xcc-8004.3294.1 at 3192.183 kb on - strand, within Xcc-8004.3294.1 at 3192.183 kb on - strand, within Xcc-8004.3294.1 at 3192.183 kb on - strand, within Xcc-8004.3294.1 at 3192.183 kb on - strand, within Xcc-8004.3294.1 at 3192.270 kb on + strand, within Xcc-8004.3294.1 at 3192.270 kb on + strand, within Xcc-8004.3294.1 at 3192.270 kb on + strand, within Xcc-8004.3294.1 at 3192.270 kb on + strand, within Xcc-8004.3294.1 at 3192.270 kb on + strand, within Xcc-8004.3294.1 at 3192.271 kb on - strand, within Xcc-8004.3294.1 at 3192.271 kb on - strand, within Xcc-8004.3294.1 at 3192.271 kb on - strand, within Xcc-8004.3294.1 at 3192.298 kb on + strand, within Xcc-8004.3294.1 at 3192.298 kb on + strand, within Xcc-8004.3294.1 at 3192.299 kb on - strand, within Xcc-8004.3294.1 at 3192.299 kb on - strand, within Xcc-8004.3294.1 at 3192.299 kb on - strand, within Xcc-8004.3294.1 at 3192.299 kb on - strand, within Xcc-8004.3294.1 at 3192.299 kb on - strand, within Xcc-8004.3294.1 at 3192.474 kb on + strand at 3192.474 kb on + strand at 3192.474 kb on + strand at 3192.475 kb on - strand at 3192.475 kb on - strand at 3192.475 kb on - strand at 3192.475 kb on - strand at 3192.475 kb on - strand at 3192.475 kb on - strand at 3192.475 kb on - strand at 3192.479 kb on + strand at 3192.479 kb on + strand at 3192.479 kb on + strand at 3192.479 kb on + strand at 3192.479 kb on + strand at 3192.479 kb on + strand at 3192.479 kb on + strand at 3192.479 kb on + strand at 3192.480 kb on - strand at 3192.480 kb on - strand at 3192.480 kb on - strand at 3192.480 kb on - strand at 3192.480 kb on - strand at 3192.480 kb on - strand at 3192.480 kb on - strand at 3192.480 kb on - strand at 3192.482 kb on - strand at 3192.483 kb on + strand at 3192.483 kb on + strand at 3192.483 kb on + strand at 3192.483 kb on + strand at 3192.483 kb on + strand at 3192.483 kb on + strand at 3192.483 kb on + strand at 3192.483 kb on + strand at 3192.483 kb on + strand at 3192.483 kb on + strand at 3192.483 kb on + strand at 3192.483 kb on + strand at 3192.483 kb on + strand at 3192.483 kb on + strand at 3192.483 kb on + strand at 3192.483 kb on + strand at 3192.483 kb on + strand at 3192.483 kb on + strand at 3192.483 kb on + strand at 3192.484 kb on - strand at 3192.484 kb on - strand at 3192.484 kb on - strand at 3192.484 kb on - strand at 3192.484 kb on - strand at 3192.484 kb on - strand at 3192.484 kb on - strand at 3192.484 kb on - strand at 3192.484 kb on - strand at 3192.484 kb on - strand at 3192.487 kb on + strand at 3192.487 kb on + strand at 3192.487 kb on + strand at 3192.487 kb on + strand at 3192.487 kb on + strand at 3192.488 kb on - strand at 3192.488 kb on - strand at 3192.625 kb on + strand at 3192.625 kb on + strand at 3192.626 kb on - strand at 3192.734 kb on - strand, within Xcc-8004.3295.1 at 3192.784 kb on + strand, within Xcc-8004.3295.1 at 3192.784 kb on + strand, within Xcc-8004.3295.1 at 3192.784 kb on + strand, within Xcc-8004.3295.1 at 3192.784 kb on + strand, within Xcc-8004.3295.1 at 3192.785 kb on - strand, within Xcc-8004.3295.1 at 3192.785 kb on - strand, within Xcc-8004.3295.1 at 3192.785 kb on - strand, within Xcc-8004.3295.1 at 3193.017 kb on + strand, within Xcc-8004.3295.1 at 3193.018 kb on - strand, within Xcc-8004.3295.1 at 3193.018 kb on - strand, within Xcc-8004.3295.1 at 3193.018 kb on - strand, within Xcc-8004.3295.1 at 3193.018 kb on - strand, within Xcc-8004.3295.1 at 3193.066 kb on + strand, within Xcc-8004.3295.1 at 3193.066 kb on + strand, within Xcc-8004.3295.1 at 3193.066 kb on + strand, within Xcc-8004.3295.1 at 3193.066 kb on + strand, within Xcc-8004.3295.1 at 3193.066 kb on + strand, within Xcc-8004.3295.1 at 3193.066 kb on + strand, within Xcc-8004.3295.1 at 3193.066 kb on + strand, within Xcc-8004.3295.1 at 3193.066 kb on + strand, within Xcc-8004.3295.1 at 3193.066 kb on + strand, within Xcc-8004.3295.1 at 3193.066 kb on + strand, within Xcc-8004.3295.1 at 3193.066 kb on + strand, within Xcc-8004.3295.1 at 3193.066 kb on + strand, within Xcc-8004.3295.1 at 3193.066 kb on + strand, within Xcc-8004.3295.1 at 3193.066 kb on + strand, within Xcc-8004.3295.1 at 3193.066 kb on + strand, within Xcc-8004.3295.1 at 3193.066 kb on + strand, within Xcc-8004.3295.1 at 3193.066 kb on + strand, within Xcc-8004.3295.1 at 3193.066 kb on + strand, within Xcc-8004.3295.1 at 3193.066 kb on + strand, within Xcc-8004.3295.1 at 3193.067 kb on - strand, within Xcc-8004.3295.1 at 3193.067 kb on - strand, within Xcc-8004.3295.1 at 3193.067 kb on - strand, within Xcc-8004.3295.1 at 3193.067 kb on - strand, within Xcc-8004.3295.1 at 3193.067 kb on - strand, within Xcc-8004.3295.1 at 3193.067 kb on - strand, within Xcc-8004.3295.1 at 3193.067 kb on - strand, within Xcc-8004.3295.1 at 3193.067 kb on - strand, within Xcc-8004.3295.1 at 3193.067 kb on - strand, within Xcc-8004.3295.1 at 3193.067 kb on - strand, within Xcc-8004.3295.1 at 3193.067 kb on - strand, within Xcc-8004.3295.1 at 3193.067 kb on - strand, within Xcc-8004.3295.1 at 3193.067 kb on - strand, within Xcc-8004.3295.1 at 3193.067 kb on - strand, within Xcc-8004.3295.1 at 3193.068 kb on + strand, within Xcc-8004.3295.1 at 3193.070 kb on + strand, within Xcc-8004.3295.1 at 3193.270 kb on + strand, within Xcc-8004.3295.1 at 3193.300 kb on + strand, within Xcc-8004.3295.1 at 3193.300 kb on + strand, within Xcc-8004.3295.1 at 3193.301 kb on - strand, within Xcc-8004.3295.1 at 3193.372 kb on + strand, within Xcc-8004.3295.1 at 3193.372 kb on + strand, within Xcc-8004.3295.1 at 3193.372 kb on + strand, within Xcc-8004.3295.1 at 3193.372 kb on + strand, within Xcc-8004.3295.1 at 3193.427 kb on + strand, within Xcc-8004.3295.1 at 3193.428 kb on - strand, within Xcc-8004.3295.1 at 3193.526 kb on + strand, within Xcc-8004.3295.1 at 3193.526 kb on + strand, within Xcc-8004.3295.1 at 3193.527 kb on - strand, within Xcc-8004.3295.1 at 3193.660 kb on + strand at 3193.660 kb on + strand at 3193.660 kb on + strand at 3193.660 kb on + strand at 3193.789 kb on + strand at 3193.789 kb on + strand at 3193.889 kb on - strand, within Xcc-8004.3296.1 at 3193.966 kb on - strand, within Xcc-8004.3296.1 at 3193.966 kb on - strand, within Xcc-8004.3296.1 at 3193.966 kb on - strand, within Xcc-8004.3296.1 at 3194.569 kb on + strand, within Xcc-8004.3296.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 3,191,675 + Xcc-8004.3294.1 0.43 +0.5 3,191,675 + Xcc-8004.3294.1 0.43 -0.6 3,191,675 + Xcc-8004.3294.1 0.43 +1.1 3,191,675 + Xcc-8004.3294.1 0.43 -3.1 3,191,745 + Xcc-8004.3294.1 0.49 -0.9 3,191,901 + Xcc-8004.3294.1 0.60 +0.5 3,191,963 + Xcc-8004.3294.1 0.64 -1.2 3,191,963 + Xcc-8004.3294.1 0.64 +1.0 3,191,964 - Xcc-8004.3294.1 0.64 -0.5 3,191,964 - Xcc-8004.3294.1 0.64 -0.0 3,192,047 + Xcc-8004.3294.1 0.71 -3.4 3,192,048 - Xcc-8004.3294.1 0.71 +0.7 3,192,077 + Xcc-8004.3294.1 0.73 -0.7 3,192,077 + Xcc-8004.3294.1 0.73 -1.5 3,192,078 - Xcc-8004.3294.1 0.73 +0.1 3,192,078 - Xcc-8004.3294.1 0.73 +0.4 3,192,078 - Xcc-8004.3294.1 0.73 -0.9 3,192,125 + Xcc-8004.3294.1 0.76 -2.1 3,192,125 + Xcc-8004.3294.1 0.76 -3.1 3,192,125 + Xcc-8004.3294.1 0.76 +0.2 3,192,125 + Xcc-8004.3294.1 0.76 -2.6 3,192,125 + Xcc-8004.3294.1 0.76 +1.3 3,192,125 + Xcc-8004.3294.1 0.76 -1.2 3,192,126 - Xcc-8004.3294.1 0.76 -1.0 3,192,126 - Xcc-8004.3294.1 0.76 -0.6 3,192,126 - Xcc-8004.3294.1 0.76 -0.9 3,192,126 - Xcc-8004.3294.1 0.76 +4.5 3,192,126 - Xcc-8004.3294.1 0.76 +0.8 3,192,126 - Xcc-8004.3294.1 0.76 -2.3 3,192,126 - Xcc-8004.3294.1 0.76 -0.3 3,192,126 - Xcc-8004.3294.1 0.76 +0.7 3,192,126 - Xcc-8004.3294.1 0.76 +0.1 3,192,126 - Xcc-8004.3294.1 0.76 +1.4 3,192,126 - Xcc-8004.3294.1 0.76 -1.1 3,192,182 + Xcc-8004.3294.1 0.80 -1.2 3,192,182 + Xcc-8004.3294.1 0.80 -3.0 3,192,182 + Xcc-8004.3294.1 0.80 -1.9 3,192,182 + Xcc-8004.3294.1 0.80 +1.4 3,192,182 + Xcc-8004.3294.1 0.80 +2.7 3,192,183 - Xcc-8004.3294.1 0.80 -0.2 3,192,183 - Xcc-8004.3294.1 0.80 -2.9 3,192,183 - Xcc-8004.3294.1 0.80 -2.7 3,192,183 - Xcc-8004.3294.1 0.80 -1.0 3,192,270 + Xcc-8004.3294.1 0.87 -0.2 3,192,270 + Xcc-8004.3294.1 0.87 +0.5 3,192,270 + Xcc-8004.3294.1 0.87 +0.2 3,192,270 + Xcc-8004.3294.1 0.87 +0.5 3,192,270 + Xcc-8004.3294.1 0.87 -1.0 3,192,271 - Xcc-8004.3294.1 0.87 +0.9 3,192,271 - Xcc-8004.3294.1 0.87 -0.3 3,192,271 - Xcc-8004.3294.1 0.87 -1.1 3,192,298 + Xcc-8004.3294.1 0.89 +0.6 3,192,298 + Xcc-8004.3294.1 0.89 -2.1 3,192,299 - Xcc-8004.3294.1 0.89 +1.1 3,192,299 - Xcc-8004.3294.1 0.89 +1.5 3,192,299 - Xcc-8004.3294.1 0.89 +0.3 3,192,299 - Xcc-8004.3294.1 0.89 +4.2 3,192,299 - Xcc-8004.3294.1 0.89 +1.4 3,192,474 + +0.6 3,192,474 + +0.5 3,192,474 + -2.0 3,192,475 - +1.6 3,192,475 - +2.2 3,192,475 - -0.1 3,192,475 - +2.1 3,192,475 - +0.8 3,192,475 - +1.0 3,192,475 - -0.3 3,192,479 + +1.0 3,192,479 + -2.2 3,192,479 + -2.1 3,192,479 + +0.3 3,192,479 + +0.8 3,192,479 + -0.7 3,192,479 + -0.1 3,192,479 + -0.1 3,192,480 - +2.2 3,192,480 - +3.6 3,192,480 - +1.3 3,192,480 - +2.1 3,192,480 - +0.9 3,192,480 - +1.1 3,192,480 - +1.3 3,192,480 - +3.8 3,192,482 - +1.5 3,192,483 + +0.3 3,192,483 + +2.6 3,192,483 + -0.9 3,192,483 + -1.8 3,192,483 + +2.1 3,192,483 + +0.3 3,192,483 + +1.7 3,192,483 + -1.0 3,192,483 + -0.2 3,192,483 + -0.4 3,192,483 + +2.1 3,192,483 + -0.2 3,192,483 + -0.9 3,192,483 + -0.4 3,192,483 + +0.6 3,192,483 + -1.0 3,192,483 + -0.5 3,192,483 + -2.6 3,192,483 + +0.2 3,192,484 - +2.1 3,192,484 - +1.0 3,192,484 - +0.4 3,192,484 - +0.9 3,192,484 - -0.0 3,192,484 - +3.6 3,192,484 - +4.0 3,192,484 - -0.6 3,192,484 - +1.6 3,192,484 - +0.4 3,192,487 + +1.1 3,192,487 + +1.3 3,192,487 + +1.1 3,192,487 + -2.5 3,192,487 + +0.5 3,192,488 - +0.1 3,192,488 - +0.2 3,192,625 + -1.2 3,192,625 + +2.4 3,192,626 - +1.2 3,192,734 - Xcc-8004.3295.1 0.18 +2.8 3,192,784 + Xcc-8004.3295.1 0.23 -0.6 3,192,784 + Xcc-8004.3295.1 0.23 +2.2 3,192,784 + Xcc-8004.3295.1 0.23 +2.8 3,192,784 + Xcc-8004.3295.1 0.23 -2.8 3,192,785 - Xcc-8004.3295.1 0.23 +1.3 3,192,785 - Xcc-8004.3295.1 0.23 -0.8 3,192,785 - Xcc-8004.3295.1 0.23 +3.7 3,193,017 + Xcc-8004.3295.1 0.42 +1.5 3,193,018 - Xcc-8004.3295.1 0.42 -1.9 3,193,018 - Xcc-8004.3295.1 0.42 +2.4 3,193,018 - Xcc-8004.3295.1 0.42 -1.0 3,193,018 - Xcc-8004.3295.1 0.42 +1.9 3,193,066 + Xcc-8004.3295.1 0.46 -0.0 3,193,066 + Xcc-8004.3295.1 0.46 +1.5 3,193,066 + Xcc-8004.3295.1 0.46 +3.4 3,193,066 + Xcc-8004.3295.1 0.46 +1.4 3,193,066 + Xcc-8004.3295.1 0.46 +0.5 3,193,066 + Xcc-8004.3295.1 0.46 -0.3 3,193,066 + Xcc-8004.3295.1 0.46 -1.5 3,193,066 + Xcc-8004.3295.1 0.46 -1.1 3,193,066 + Xcc-8004.3295.1 0.46 +0.7 3,193,066 + Xcc-8004.3295.1 0.46 +0.1 3,193,066 + Xcc-8004.3295.1 0.46 +2.0 3,193,066 + Xcc-8004.3295.1 0.46 +0.8 3,193,066 + Xcc-8004.3295.1 0.46 -2.3 3,193,066 + Xcc-8004.3295.1 0.46 +0.8 3,193,066 + Xcc-8004.3295.1 0.46 +0.1 3,193,066 + Xcc-8004.3295.1 0.46 +0.5 3,193,066 + Xcc-8004.3295.1 0.46 +1.5 3,193,066 + Xcc-8004.3295.1 0.46 +1.7 3,193,066 + Xcc-8004.3295.1 0.46 -1.0 3,193,067 - Xcc-8004.3295.1 0.46 +1.6 3,193,067 - Xcc-8004.3295.1 0.46 +1.1 3,193,067 - Xcc-8004.3295.1 0.46 +0.5 3,193,067 - Xcc-8004.3295.1 0.46 +2.4 3,193,067 - Xcc-8004.3295.1 0.46 +2.5 3,193,067 - Xcc-8004.3295.1 0.46 +2.0 3,193,067 - Xcc-8004.3295.1 0.46 +6.0 3,193,067 - Xcc-8004.3295.1 0.46 -0.3 3,193,067 - Xcc-8004.3295.1 0.46 +2.1 3,193,067 - Xcc-8004.3295.1 0.46 -1.3 3,193,067 - Xcc-8004.3295.1 0.46 +0.8 3,193,067 - Xcc-8004.3295.1 0.46 +2.0 3,193,067 - Xcc-8004.3295.1 0.46 +2.5 3,193,067 - Xcc-8004.3295.1 0.46 +1.3 3,193,068 + Xcc-8004.3295.1 0.46 -0.8 3,193,070 + Xcc-8004.3295.1 0.46 +0.2 3,193,270 + Xcc-8004.3295.1 0.63 +1.8 3,193,300 + Xcc-8004.3295.1 0.65 +1.4 3,193,300 + Xcc-8004.3295.1 0.65 +0.4 3,193,301 - Xcc-8004.3295.1 0.66 +1.8 3,193,372 + Xcc-8004.3295.1 0.71 +1.1 3,193,372 + Xcc-8004.3295.1 0.71 -1.6 3,193,372 + Xcc-8004.3295.1 0.71 +1.0 3,193,372 + Xcc-8004.3295.1 0.71 -1.3 3,193,427 + Xcc-8004.3295.1 0.76 +0.6 3,193,428 - Xcc-8004.3295.1 0.76 -1.9 3,193,526 + Xcc-8004.3295.1 0.84 +0.1 3,193,526 + Xcc-8004.3295.1 0.84 +1.7 3,193,527 - Xcc-8004.3295.1 0.84 +1.2 3,193,660 + +1.6 3,193,660 + -1.0 3,193,660 + +1.5 3,193,660 + -2.4 3,193,789 + -0.8 3,193,789 + +2.2 3,193,889 - Xcc-8004.3296.1 0.10 +2.8 3,193,966 - Xcc-8004.3296.1 0.15 +1.2 3,193,966 - Xcc-8004.3296.1 0.15 +1.2 3,193,966 - Xcc-8004.3296.1 0.15 +2.3 3,194,569 + Xcc-8004.3296.1 0.54 +0.1
Or see this region's nucleotide sequence