Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.285.1 and Xcc-8004.287.1 overlap by 4 nucleotides Xcc-8004.287.1 and Xcc-8004.288.1 are separated by 126 nucleotides Xcc-8004.288.1 and Xcc-8004.289.1 are separated by 291 nucleotides
Xcc-8004.285.1: Xcc-8004.285.1 - FIG01210106: hypothetical protein, at 271,800 to 274,301
Xcc-8004.285.1
Xcc-8004.287.1: Xcc-8004.287.1 - Haloalkane dehalogenase-like protein, at 274,298 to 275,200
Xcc-8004.287.1
Xcc-8004.288.1: Xcc-8004.288.1 - Ferredoxin, at 275,327 to 275,755
Xcc-8004.288.1
Xcc-8004.289.1: Xcc-8004.289.1 - AMP-dependent synthetase/ligase in alkane synthesis cluster, at 276,047 to 277,717
Xcc-8004.289.1
Position (kb) 274
275
276 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 273.384 kb on + strand, within Xcc-8004.285.1 at 273.384 kb on + strand, within Xcc-8004.285.1 at 273.384 kb on + strand, within Xcc-8004.285.1 at 273.384 kb on + strand, within Xcc-8004.285.1 at 273.384 kb on + strand, within Xcc-8004.285.1 at 273.385 kb on - strand, within Xcc-8004.285.1 at 273.385 kb on - strand, within Xcc-8004.285.1 at 273.437 kb on - strand, within Xcc-8004.285.1 at 273.437 kb on - strand, within Xcc-8004.285.1 at 273.676 kb on + strand, within Xcc-8004.285.1 at 273.676 kb on + strand, within Xcc-8004.285.1 at 273.677 kb on - strand, within Xcc-8004.285.1 at 273.677 kb on - strand, within Xcc-8004.285.1 at 273.677 kb on - strand, within Xcc-8004.285.1 at 273.677 kb on - strand, within Xcc-8004.285.1 at 273.688 kb on + strand, within Xcc-8004.285.1 at 273.689 kb on - strand, within Xcc-8004.285.1 at 273.689 kb on - strand, within Xcc-8004.285.1 at 273.783 kb on - strand, within Xcc-8004.285.1 at 273.783 kb on - strand, within Xcc-8004.285.1 at 273.853 kb on + strand, within Xcc-8004.285.1 at 273.853 kb on + strand, within Xcc-8004.285.1 at 273.853 kb on + strand, within Xcc-8004.285.1 at 273.853 kb on + strand, within Xcc-8004.285.1 at 273.853 kb on + strand, within Xcc-8004.285.1 at 273.909 kb on + strand, within Xcc-8004.285.1 at 273.946 kb on + strand, within Xcc-8004.285.1 at 274.026 kb on + strand, within Xcc-8004.285.1 at 274.053 kb on + strand at 274.054 kb on - strand at 274.054 kb on - strand at 274.097 kb on + strand at 274.230 kb on + strand at 274.231 kb on + strand at 274.234 kb on + strand at 274.255 kb on + strand at 274.255 kb on + strand at 274.256 kb on - strand at 274.296 kb on - strand at 274.364 kb on + strand at 274.364 kb on + strand at 274.365 kb on - strand at 274.431 kb on - strand, within Xcc-8004.287.1 at 274.431 kb on - strand, within Xcc-8004.287.1 at 274.554 kb on - strand, within Xcc-8004.287.1 at 274.877 kb on + strand, within Xcc-8004.287.1 at 274.877 kb on + strand, within Xcc-8004.287.1 at 274.877 kb on + strand, within Xcc-8004.287.1 at 274.877 kb on + strand, within Xcc-8004.287.1 at 274.877 kb on + strand, within Xcc-8004.287.1 at 274.878 kb on - strand, within Xcc-8004.287.1 at 274.878 kb on - strand, within Xcc-8004.287.1 at 274.878 kb on - strand, within Xcc-8004.287.1 at 274.878 kb on - strand, within Xcc-8004.287.1 at 275.129 kb on + strand at 275.129 kb on + strand at 275.198 kb on + strand at 275.198 kb on + strand at 275.335 kb on + strand at 275.336 kb on - strand at 275.336 kb on - strand at 275.692 kb on + strand, within Xcc-8004.288.1 at 275.692 kb on + strand, within Xcc-8004.288.1 at 275.693 kb on - strand, within Xcc-8004.288.1 at 275.778 kb on - strand at 275.892 kb on + strand at 275.914 kb on + strand at 276.039 kb on - strand at 276.082 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 273,384 + Xcc-8004.285.1 0.63 +1.3 273,384 + Xcc-8004.285.1 0.63 +1.5 273,384 + Xcc-8004.285.1 0.63 -2.5 273,384 + Xcc-8004.285.1 0.63 -0.6 273,384 + Xcc-8004.285.1 0.63 -2.5 273,385 - Xcc-8004.285.1 0.63 +0.1 273,385 - Xcc-8004.285.1 0.63 -0.5 273,437 - Xcc-8004.285.1 0.65 -4.3 273,437 - Xcc-8004.285.1 0.65 -0.1 273,676 + Xcc-8004.285.1 0.75 +0.4 273,676 + Xcc-8004.285.1 0.75 -0.8 273,677 - Xcc-8004.285.1 0.75 -2.2 273,677 - Xcc-8004.285.1 0.75 -0.2 273,677 - Xcc-8004.285.1 0.75 +0.8 273,677 - Xcc-8004.285.1 0.75 +0.4 273,688 + Xcc-8004.285.1 0.75 -2.7 273,689 - Xcc-8004.285.1 0.75 +1.8 273,689 - Xcc-8004.285.1 0.75 -0.4 273,783 - Xcc-8004.285.1 0.79 -1.8 273,783 - Xcc-8004.285.1 0.79 -0.1 273,853 + Xcc-8004.285.1 0.82 -0.7 273,853 + Xcc-8004.285.1 0.82 +0.3 273,853 + Xcc-8004.285.1 0.82 -0.9 273,853 + Xcc-8004.285.1 0.82 +1.9 273,853 + Xcc-8004.285.1 0.82 -1.8 273,909 + Xcc-8004.285.1 0.84 -1.6 273,946 + Xcc-8004.285.1 0.86 -0.9 274,026 + Xcc-8004.285.1 0.89 +0.2 274,053 + +0.1 274,054 - +0.8 274,054 - +0.7 274,097 + -3.1 274,230 + +1.3 274,231 + -0.1 274,234 + -0.8 274,255 + +0.3 274,255 + +0.9 274,256 - -2.9 274,296 - -1.7 274,364 + -0.1 274,364 + -1.7 274,365 - -0.3 274,431 - Xcc-8004.287.1 0.15 +0.8 274,431 - Xcc-8004.287.1 0.15 +0.6 274,554 - Xcc-8004.287.1 0.28 +2.8 274,877 + Xcc-8004.287.1 0.64 +0.1 274,877 + Xcc-8004.287.1 0.64 -0.7 274,877 + Xcc-8004.287.1 0.64 -2.4 274,877 + Xcc-8004.287.1 0.64 -1.4 274,877 + Xcc-8004.287.1 0.64 -1.9 274,878 - Xcc-8004.287.1 0.64 -0.1 274,878 - Xcc-8004.287.1 0.64 -0.1 274,878 - Xcc-8004.287.1 0.64 +0.9 274,878 - Xcc-8004.287.1 0.64 -3.0 275,129 + -0.3 275,129 + -0.4 275,198 + +0.5 275,198 + -1.7 275,335 + -3.3 275,336 - -2.6 275,336 - +1.2 275,692 + Xcc-8004.288.1 0.85 +0.2 275,692 + Xcc-8004.288.1 0.85 +0.9 275,693 - Xcc-8004.288.1 0.85 -2.2 275,778 - -2.6 275,892 + +0.4 275,914 + -1.5 276,039 - -1.1 276,082 + -1.7
Or see this region's nucleotide sequence