Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2832.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2830.1 and Xcc-8004.2831.1 overlap by 14 nucleotidesXcc-8004.2831.1 and Xcc-8004.2832.1 overlap by 4 nucleotidesXcc-8004.2832.1 and Xcc-8004.2833.1 are separated by 23 nucleotidesXcc-8004.2833.1 and Xcc-8004.2834.1 overlap by 1 nucleotides Xcc-8004.2830.1: Xcc-8004.2830.1 - Flagellar biosynthesis protein FlhF, at 2,746,348 to 2,748,120 Xcc-8004.2830.1 Xcc-8004.2831.1: Xcc-8004.2831.1 - Flagellar synthesis regulator FleN, at 2,748,107 to 2,748,991 Xcc-8004.2831.1 Xcc-8004.2832.1: Xcc-8004.2832.1 - RNA polymerase sigma factor for flagellar operon, at 2,748,988 to 2,749,755 Xcc-8004.2832.1 Xcc-8004.2833.1: Xcc-8004.2833.1 - Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY, at 2,749,779 to 2,750,171 Xcc-8004.2833.1 Xcc-8004.2834.1: Xcc-8004.2834.1 - Chemotaxis response - phosphatase CheZ, at 2,750,171 to 2,750,797 Xcc-8004.2834.1 Position (kb) 2748 2749 2750Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2748.081 kb on + strandat 2748.081 kb on + strandat 2748.090 kb on + strandat 2748.090 kb on + strandat 2748.090 kb on + strandat 2748.090 kb on + strandat 2748.090 kb on + strandat 2748.091 kb on - strandat 2748.091 kb on - strandat 2748.091 kb on - strandat 2748.091 kb on - strandat 2748.091 kb on - strandat 2748.122 kb on + strandat 2748.122 kb on + strandat 2748.122 kb on + strandat 2748.122 kb on + strandat 2748.122 kb on + strandat 2748.123 kb on - strandat 2748.123 kb on - strandat 2748.123 kb on - strandat 2748.123 kb on - strandat 2748.223 kb on + strand, within Xcc-8004.2831.1at 2748.224 kb on - strand, within Xcc-8004.2831.1at 2748.224 kb on - strand, within Xcc-8004.2831.1at 2748.224 kb on - strand, within Xcc-8004.2831.1at 2748.344 kb on + strand, within Xcc-8004.2831.1at 2748.344 kb on + strand, within Xcc-8004.2831.1at 2748.344 kb on + strand, within Xcc-8004.2831.1at 2748.344 kb on + strand, within Xcc-8004.2831.1at 2748.344 kb on + strand, within Xcc-8004.2831.1at 2748.344 kb on + strand, within Xcc-8004.2831.1at 2748.344 kb on + strand, within Xcc-8004.2831.1at 2748.344 kb on + strand, within Xcc-8004.2831.1at 2748.344 kb on + strand, within Xcc-8004.2831.1at 2748.344 kb on + strand, within Xcc-8004.2831.1at 2748.344 kb on + strand, within Xcc-8004.2831.1at 2748.344 kb on + strand, within Xcc-8004.2831.1at 2748.344 kb on + strand, within Xcc-8004.2831.1at 2748.345 kb on - strand, within Xcc-8004.2831.1at 2748.345 kb on - strand, within Xcc-8004.2831.1at 2748.345 kb on - strand, within Xcc-8004.2831.1at 2748.345 kb on - strand, within Xcc-8004.2831.1at 2748.345 kb on - strand, within Xcc-8004.2831.1at 2748.345 kb on - strand, within Xcc-8004.2831.1at 2748.345 kb on - strand, within Xcc-8004.2831.1at 2748.345 kb on - strand, within Xcc-8004.2831.1at 2748.345 kb on - strand, within Xcc-8004.2831.1at 2748.345 kb on - strand, within Xcc-8004.2831.1at 2748.635 kb on + strand, within Xcc-8004.2831.1at 2748.636 kb on - strand, within Xcc-8004.2831.1at 2748.731 kb on + strand, within Xcc-8004.2831.1at 2748.731 kb on + strand, within Xcc-8004.2831.1at 2748.732 kb on - strand, within Xcc-8004.2831.1at 2748.732 kb on - strand, within Xcc-8004.2831.1at 2748.732 kb on - strand, within Xcc-8004.2831.1at 2748.732 kb on - strand, within Xcc-8004.2831.1at 2748.785 kb on + strand, within Xcc-8004.2831.1at 2748.785 kb on + strand, within Xcc-8004.2831.1at 2748.786 kb on - strand, within Xcc-8004.2831.1at 2748.786 kb on - strand, within Xcc-8004.2831.1at 2748.858 kb on - strand, within Xcc-8004.2831.1at 2748.904 kb on + strandat 2748.904 kb on + strandat 2748.904 kb on + strandat 2748.905 kb on - strandat 2748.993 kb on + strandat 2748.993 kb on + strandat 2748.993 kb on + strandat 2748.993 kb on + strandat 2748.994 kb on - strandat 2748.994 kb on - strandat 2748.994 kb on - strandat 2749.024 kb on + strandat 2749.025 kb on - strandat 2749.044 kb on + strandat 2749.044 kb on + strandat 2749.186 kb on + strand, within Xcc-8004.2832.1at 2749.186 kb on + strand, within Xcc-8004.2832.1at 2749.187 kb on - strand, within Xcc-8004.2832.1at 2749.219 kb on + strand, within Xcc-8004.2832.1at 2749.219 kb on + strand, within Xcc-8004.2832.1at 2749.220 kb on - strand, within Xcc-8004.2832.1at 2749.220 kb on - strand, within Xcc-8004.2832.1at 2749.220 kb on - strand, within Xcc-8004.2832.1at 2749.220 kb on - strand, within Xcc-8004.2832.1at 2749.220 kb on - strand, within Xcc-8004.2832.1at 2749.220 kb on - strand, within Xcc-8004.2832.1at 2749.220 kb on - strand, within Xcc-8004.2832.1at 2749.220 kb on - strand, within Xcc-8004.2832.1at 2749.402 kb on + strand, within Xcc-8004.2832.1at 2749.402 kb on + strand, within Xcc-8004.2832.1at 2749.403 kb on - strand, within Xcc-8004.2832.1at 2749.403 kb on - strand, within Xcc-8004.2832.1at 2749.403 kb on - strand, within Xcc-8004.2832.1at 2749.600 kb on + strand, within Xcc-8004.2832.1at 2749.600 kb on + strand, within Xcc-8004.2832.1at 2749.600 kb on + strand, within Xcc-8004.2832.1at 2749.601 kb on - strand, within Xcc-8004.2832.1at 2749.601 kb on - strand, within Xcc-8004.2832.1at 2749.601 kb on - strand, within Xcc-8004.2832.1at 2749.603 kb on + strand, within Xcc-8004.2832.1at 2749.603 kb on + strand, within Xcc-8004.2832.1at 2749.603 kb on + strand, within Xcc-8004.2832.1at 2749.603 kb on + strand, within Xcc-8004.2832.1at 2749.604 kb on - strand, within Xcc-8004.2832.1at 2749.604 kb on - strand, within Xcc-8004.2832.1at 2749.604 kb on - strand, within Xcc-8004.2832.1at 2749.604 kb on - strand, within Xcc-8004.2832.1at 2749.767 kb on + strandat 2749.767 kb on + strandat 2749.768 kb on - strandat 2749.768 kb on - strandat 2749.768 kb on - strandat 2749.784 kb on + strandat 2749.784 kb on + strandat 2749.785 kb on - strandat 2749.785 kb on - strandat 2749.785 kb on - strandat 2749.785 kb on - strandat 2749.785 kb on - strandat 2750.091 kb on + strand, within Xcc-8004.2833.1at 2750.091 kb on + strand, within Xcc-8004.2833.1at 2750.092 kb on - strand, within Xcc-8004.2833.1at 2750.092 kb on - strand, within Xcc-8004.2833.1at 2750.092 kb on - strand, within Xcc-8004.2833.1at 2750.092 kb on - strand, within Xcc-8004.2833.1at 2750.092 kb on - strand, within Xcc-8004.2833.1at 2750.092 kb on - strand, within Xcc-8004.2833.1at 2750.588 kb on + strand, within Xcc-8004.2834.1at 2750.588 kb on + strand, within Xcc-8004.2834.1at 2750.588 kb on + strand, within Xcc-8004.2834.1at 2750.588 kb on + strand, within Xcc-8004.2834.1at 2750.589 kb on - strand, within Xcc-8004.2834.1at 2750.589 kb on - strand, within Xcc-8004.2834.1at 2750.589 kb on - strand, within Xcc-8004.2834.1at 2750.589 kb on - strand, within Xcc-8004.2834.1at 2750.589 kb on - strand, within Xcc-8004.2834.1at 2750.589 kb on - strand, within Xcc-8004.2834.1at 2750.589 kb on - strand, within Xcc-8004.2834.1at 2750.589 kb on - strand, within Xcc-8004.2834.1at 2750.589 kb on - strand, within Xcc-8004.2834.1at 2750.589 kb on - strand, within Xcc-8004.2834.1at 2750.589 kb on - strand, within Xcc-8004.2834.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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2,748,081 + +1.8
2,748,081 + +3.8
2,748,090 + -2.0
2,748,090 + +1.9
2,748,090 + +3.1
2,748,090 + +3.1
2,748,090 + +2.5
2,748,091 - -2.7
2,748,091 - -0.6
2,748,091 - -1.0
2,748,091 - +0.7
2,748,091 - +0.1
2,748,122 + +1.9
2,748,122 + +2.1
2,748,122 + +1.0
2,748,122 + -2.1
2,748,122 + +2.5
2,748,123 - -1.4
2,748,123 - +2.0
2,748,123 - +0.0
2,748,123 - -0.3
2,748,223 + Xcc-8004.2831.1 0.13 +0.6
2,748,224 - Xcc-8004.2831.1 0.13 -0.9
2,748,224 - Xcc-8004.2831.1 0.13 -3.1
2,748,224 - Xcc-8004.2831.1 0.13 -1.4
2,748,344 + Xcc-8004.2831.1 0.27 +1.0
2,748,344 + Xcc-8004.2831.1 0.27 +2.1
2,748,344 + Xcc-8004.2831.1 0.27 -2.0
2,748,344 + Xcc-8004.2831.1 0.27 +0.6
2,748,344 + Xcc-8004.2831.1 0.27 +2.2
2,748,344 + Xcc-8004.2831.1 0.27 +1.2
2,748,344 + Xcc-8004.2831.1 0.27 +0.6
2,748,344 + Xcc-8004.2831.1 0.27 +0.3
2,748,344 + Xcc-8004.2831.1 0.27 +0.5
2,748,344 + Xcc-8004.2831.1 0.27 -1.2
2,748,344 + Xcc-8004.2831.1 0.27 +0.9
2,748,344 + Xcc-8004.2831.1 0.27 +3.7
2,748,344 + Xcc-8004.2831.1 0.27 +1.4
2,748,345 - Xcc-8004.2831.1 0.27 +1.0
2,748,345 - Xcc-8004.2831.1 0.27 -1.6
2,748,345 - Xcc-8004.2831.1 0.27 -1.8
2,748,345 - Xcc-8004.2831.1 0.27 -2.5
2,748,345 - Xcc-8004.2831.1 0.27 +1.5
2,748,345 - Xcc-8004.2831.1 0.27 -1.1
2,748,345 - Xcc-8004.2831.1 0.27 +0.2
2,748,345 - Xcc-8004.2831.1 0.27 -0.4
2,748,345 - Xcc-8004.2831.1 0.27 -0.4
2,748,345 - Xcc-8004.2831.1 0.27 +1.0
2,748,635 + Xcc-8004.2831.1 0.60 +2.3
2,748,636 - Xcc-8004.2831.1 0.60 +0.3
2,748,731 + Xcc-8004.2831.1 0.71 +2.0
2,748,731 + Xcc-8004.2831.1 0.71 +2.5
2,748,732 - Xcc-8004.2831.1 0.71 -1.8
2,748,732 - Xcc-8004.2831.1 0.71 -2.6
2,748,732 - Xcc-8004.2831.1 0.71 +2.4
2,748,732 - Xcc-8004.2831.1 0.71 +1.0
2,748,785 + Xcc-8004.2831.1 0.77 +2.9
2,748,785 + Xcc-8004.2831.1 0.77 +2.7
2,748,786 - Xcc-8004.2831.1 0.77 +0.3
2,748,786 - Xcc-8004.2831.1 0.77 +0.4
2,748,858 - Xcc-8004.2831.1 0.85 -1.1
2,748,904 + +3.2
2,748,904 + +3.6
2,748,904 + +4.2
2,748,905 - -0.1
2,748,993 + +0.4
2,748,993 + +0.4
2,748,993 + +3.2
2,748,993 + -0.0
2,748,994 - -0.2
2,748,994 - -1.3
2,748,994 - -1.3
2,749,024 + +1.5
2,749,025 - -2.5
2,749,044 + +1.5
2,749,044 + +1.7
2,749,186 + Xcc-8004.2832.1 0.26 +2.2
2,749,186 + Xcc-8004.2832.1 0.26 +0.5
2,749,187 - Xcc-8004.2832.1 0.26 +0.6
2,749,219 + Xcc-8004.2832.1 0.30 +2.1
2,749,219 + Xcc-8004.2832.1 0.30 +2.1
2,749,220 - Xcc-8004.2832.1 0.30 -0.2
2,749,220 - Xcc-8004.2832.1 0.30 +0.9
2,749,220 - Xcc-8004.2832.1 0.30 +0.5
2,749,220 - Xcc-8004.2832.1 0.30 -0.7
2,749,220 - Xcc-8004.2832.1 0.30 +0.6
2,749,220 - Xcc-8004.2832.1 0.30 +0.1
2,749,220 - Xcc-8004.2832.1 0.30 +3.2
2,749,220 - Xcc-8004.2832.1 0.30 +0.4
2,749,402 + Xcc-8004.2832.1 0.54 +2.6
2,749,402 + Xcc-8004.2832.1 0.54 +4.1
2,749,403 - Xcc-8004.2832.1 0.54 +0.1
2,749,403 - Xcc-8004.2832.1 0.54 -1.7
2,749,403 - Xcc-8004.2832.1 0.54 +2.4
2,749,600 + Xcc-8004.2832.1 0.80 +4.6
2,749,600 + Xcc-8004.2832.1 0.80 +3.0
2,749,600 + Xcc-8004.2832.1 0.80 +2.2
2,749,601 - Xcc-8004.2832.1 0.80 +1.1
2,749,601 - Xcc-8004.2832.1 0.80 +1.3
2,749,601 - Xcc-8004.2832.1 0.80 +3.3
2,749,603 + Xcc-8004.2832.1 0.80 +2.7
2,749,603 + Xcc-8004.2832.1 0.80 +4.4
2,749,603 + Xcc-8004.2832.1 0.80 +2.0
2,749,603 + Xcc-8004.2832.1 0.80 +2.6
2,749,604 - Xcc-8004.2832.1 0.80 +0.9
2,749,604 - Xcc-8004.2832.1 0.80 -1.2
2,749,604 - Xcc-8004.2832.1 0.80 -0.6
2,749,604 - Xcc-8004.2832.1 0.80 -2.9
2,749,767 + +2.0
2,749,767 + +1.7
2,749,768 - +0.1
2,749,768 - +0.1
2,749,768 - +0.4
2,749,784 + -0.9
2,749,784 + -1.8
2,749,785 - -0.4
2,749,785 - -0.7
2,749,785 - -2.8
2,749,785 - +0.2
2,749,785 - -0.8
2,750,091 + Xcc-8004.2833.1 0.79 -1.5
2,750,091 + Xcc-8004.2833.1 0.79 -2.7
2,750,092 - Xcc-8004.2833.1 0.80 -0.7
2,750,092 - Xcc-8004.2833.1 0.80 -0.8
2,750,092 - Xcc-8004.2833.1 0.80 +0.2
2,750,092 - Xcc-8004.2833.1 0.80 +0.6
2,750,092 - Xcc-8004.2833.1 0.80 +1.4
2,750,092 - Xcc-8004.2833.1 0.80 -2.1
2,750,588 + Xcc-8004.2834.1 0.67 -1.5
2,750,588 + Xcc-8004.2834.1 0.67 -2.3
2,750,588 + Xcc-8004.2834.1 0.67 -1.3
2,750,588 + Xcc-8004.2834.1 0.67 -0.4
2,750,589 - Xcc-8004.2834.1 0.67 -2.5
2,750,589 - Xcc-8004.2834.1 0.67 +1.2
2,750,589 - Xcc-8004.2834.1 0.67 -0.1
2,750,589 - Xcc-8004.2834.1 0.67 -0.4
2,750,589 - Xcc-8004.2834.1 0.67 -0.4
2,750,589 - Xcc-8004.2834.1 0.67 +1.6
2,750,589 - Xcc-8004.2834.1 0.67 -0.7
2,750,589 - Xcc-8004.2834.1 0.67 +0.6
2,750,589 - Xcc-8004.2834.1 0.67 -2.2
2,750,589 - Xcc-8004.2834.1 0.67 +1.3
2,750,589 - Xcc-8004.2834.1 0.67 -1.9

Or see this region's nucleotide sequence