Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2691.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
2,588,184	+		Xcc-8004.2688.1	0.71	-0.1
2,588,184	+		Xcc-8004.2688.1	0.71	+0.7
2,588,184	+		Xcc-8004.2688.1	0.71	-0.6
2,588,184	+		Xcc-8004.2688.1	0.71	-3.6
2,588,184	+		Xcc-8004.2688.1	0.71	-0.9
2,588,184	+		Xcc-8004.2688.1	0.71	-1.9
2,588,184	+		Xcc-8004.2688.1	0.71	+1.0
2,588,184	+		Xcc-8004.2688.1	0.71	+0.4
2,588,184	+		Xcc-8004.2688.1	0.71	-2.6
2,588,185	-		Xcc-8004.2688.1	0.71	-0.6
2,588,185	-		Xcc-8004.2688.1	0.71	+1.1
2,588,185	-		Xcc-8004.2688.1	0.71	-2.5
2,588,185	-		Xcc-8004.2688.1	0.71	-1.3
2,588,185	-		Xcc-8004.2688.1	0.71	-0.0
2,588,185	-		Xcc-8004.2688.1	0.71	+0.3
2,588,185	-		Xcc-8004.2688.1	0.71	-1.2
2,588,185	-		Xcc-8004.2688.1	0.71	+2.1
2,588,185	-		Xcc-8004.2688.1	0.71	+0.4
2,588,185	-		Xcc-8004.2688.1	0.71	+1.7
2,588,185	-		Xcc-8004.2688.1	0.71	-0.1
2,588,185	-		Xcc-8004.2688.1	0.71	-0.6
2,588,185	-		Xcc-8004.2688.1	0.71	+0.9
2,588,185	-		Xcc-8004.2688.1	0.71	-0.5
2,588,185	-		Xcc-8004.2688.1	0.71	-0.6
2,588,185	-		Xcc-8004.2688.1	0.71	+0.6
2,588,185	-		Xcc-8004.2688.1	0.71	+1.6
2,588,511	+				+0.1
2,588,524	+				-0.8
2,588,524	+				-0.7
2,588,524	+				+1.6
2,588,524	+				-0.2
2,588,524	+				-1.1
2,588,525	-				+0.4
2,588,726	+				+2.0
2,588,726	+				+1.7
2,588,726	+				-0.8
2,588,727	-				+1.2
2,588,727	-				+1.4
2,588,727	-				+0.3
2,588,727	-				+0.4
2,588,745	+				-2.0
2,588,745	+				-1.4
2,588,745	+				-0.9
2,588,745	+				-0.3
2,588,745	+				-0.3
2,588,745	+				+0.3
2,588,745	+				+0.6
2,588,745	+				-0.4
2,588,746	-				+1.2
2,588,746	-				+2.0
2,588,746	-				+0.2
2,588,746	-				-2.7
2,588,746	-				+1.0
2,588,746	-				-0.9
2,588,746	-				+1.0
2,588,746	-				-1.4
2,588,746	-				-0.2
2,588,910	-				+0.3
2,588,950	+				+1.1
2,588,951	-				-0.8
2,588,960	+				+1.3
2,588,960	+				+0.3
2,588,961	-				-2.2
2,588,961	-				-1.0
2,588,985	+				+0.5
2,588,985	+				-0.8
2,588,985	+				+1.4
2,588,985	+				+0.9
2,588,985	+				-2.9
2,588,985	+				-0.7
2,588,985	+				+0.0
2,588,986	-				-0.2
2,588,986	-				-0.1
2,588,986	-				+0.7
2,588,986	-				+0.9
2,588,986	-				-0.0
2,589,004	+				+0.9
2,589,004	+				+0.2
2,589,004	+				+0.5
2,589,004	+				+0.4
2,589,004	+				-2.6
2,589,004	+				+0.0
2,589,004	+				-1.8
2,589,004	+				+0.0
2,589,004	+				-0.4
2,589,004	+				-0.9
2,589,004	+				+1.6
2,589,004	+				-1.7
2,589,004	+				+0.2
2,589,004	+				-1.0
2,589,004	+				+1.3
2,589,004	+				+1.4
2,589,004	+				-0.8
2,589,004	+				-1.8
2,589,004	+				-1.2
2,589,004	+				-1.9
2,589,004	+				-0.4
2,589,004	+				+0.5
2,589,004	+				+0.4
2,589,004	+				-1.0
2,589,005	-				+1.3
2,589,005	-				+0.2
2,589,005	-				-0.2
2,589,005	-				-1.8
2,589,005	-				+0.7
2,589,005	-				-0.2
2,589,005	-				-0.4
2,589,005	-				+1.8
2,589,005	-				+1.8
2,589,005	-				-0.2
2,589,005	-				+1.0
2,589,005	-				-1.2
2,589,005	-				-1.2
2,589,005	-				+1.2
2,589,005	-				-2.7
2,589,005	-				-0.4
2,589,005	-				+0.6
2,589,005	-				-3.3
2,589,005	-				+0.6
2,589,005	-				+0.3
2,589,005	-				+0.7
2,589,005	-				-1.0
2,589,005	-				-1.3
2,589,005	-				-0.4
2,589,005	-				-2.7
2,589,005	-				+1.4
2,589,005	-				+0.2
2,589,050	+		Xcc-8004.2690.1	0.17	-1.3
2,589,050	+		Xcc-8004.2690.1	0.17	-1.2
2,589,051	-		Xcc-8004.2690.1	0.17	+0.5
2,589,051	-		Xcc-8004.2690.1	0.17	-1.0
2,589,063	+		Xcc-8004.2690.1	0.24	+0.9
2,589,064	-		Xcc-8004.2690.1	0.25	-0.9
2,589,064	-		Xcc-8004.2690.1	0.25	-1.8
2,589,130	-		Xcc-8004.2690.1	0.61	+0.8
2,589,130	-		Xcc-8004.2690.1	0.61	-1.6
2,589,153	+				+0.7
2,589,153	+				-2.4
2,589,153	+				+1.4
2,589,153	+				-1.0
2,589,153	+				+0.3
2,589,153	+				-1.8
2,589,154	-				-0.8
2,589,154	-				-0.7
2,589,154	-				+1.7
2,589,154	-				-3.5
2,589,154	-				-3.3
2,589,154	-				-1.7
2,589,154	-				+0.4
2,589,154	-				-1.4
2,589,264	+		Xcc-8004.2691.1	0.88	-0.0
2,589,264	+		Xcc-8004.2691.1	0.88	-1.9
2,589,264	+		Xcc-8004.2691.1	0.88	+1.4
2,589,265	-		Xcc-8004.2691.1	0.88	+3.0
2,589,265	-		Xcc-8004.2691.1	0.88	-2.3
2,589,265	-		Xcc-8004.2691.1	0.88	+0.7
2,589,265	-		Xcc-8004.2691.1	0.88	+0.1
2,589,291	+				-1.1
2,589,291	+				+0.2
2,589,292	-				+1.6
2,589,292	-				-2.7
2,589,292	-				+0.3
2,589,292	-				-1.0
2,589,292	-				+0.0
2,589,340	+				+2.6
2,589,340	+				+0.4
2,589,341	-				-1.4
2,589,341	-				-0.6
2,589,341	-				-0.8
2,589,342	+				+0.1
2,589,342	+				-0.8
2,589,343	-				-2.8
2,589,343	-				-1.0
2,589,343	-				-2.0
2,589,343	-				-1.1
2,589,362	+				+1.7
2,589,362	+				-0.7
2,589,362	+				+2.3
2,589,363	-				-3.8
2,589,363	-				+1.1
2,589,374	+				-1.4
2,589,374	+				+0.8
2,589,374	+				-2.9
2,589,374	+				+1.3
2,589,374	+				+2.9
2,589,375	-				-0.5
2,589,375	-				+0.1
2,589,375	-				-0.1
2,589,375	-				-0.4
2,589,376	+				-1.6
2,589,376	+				+1.3
2,589,376	+				+1.3
2,589,376	+				+1.2
2,589,376	+				-1.9
2,589,376	+				+1.1
2,589,376	+				+0.5
2,589,377	-				+1.2
2,589,377	-				-2.7
2,589,377	-				+1.1
2,589,377	-				+0.5
2,589,377	-				-0.6
2,589,377	-				-1.5
2,589,377	-				-1.6
2,589,377	-				-3.8
2,589,390	-				+0.3
2,589,390	-				+2.0
2,589,390	-				+0.8
2,589,400	-				+0.7
2,589,437	+				-3.2
2,589,495	+				+1.7
2,589,495	+				-0.5
2,589,495	+				+0.0
2,589,496	-				+0.0
2,589,496	-				+0.9
2,589,496	-				+0.7
2,589,496	-				-0.6
2,589,496	-				-1.4
2,589,503	+				+1.2
2,589,503	+				-1.4
2,589,504	-				+1.5
2,589,515	+				+1.2
2,589,516	-				+0.9
2,589,516	-				+1.2
2,589,529	+				-1.0
2,589,535	-				+1.0
2,589,535	-				-1.1
2,589,535	-				-1.5
2,589,535	-				+1.8
2,589,563	+				-2.4
2,589,568	-				-2.9
2,589,580	+				-0.4
2,589,580	+				-1.9
2,589,581	-				+1.3
2,589,581	-				-0.6
2,589,593	+				-3.2
2,589,593	+				-0.8
2,589,593	+				+2.0
2,589,593	+				+0.6
2,589,593	+				-2.7
2,589,593	+				-2.3
2,589,594	-				-1.2
2,589,594	-				+1.1
2,589,594	-				-2.4
2,589,594	-				-0.2
2,589,594	-				+0.1
2,589,594	-				-3.3
2,589,594	-				-2.0
2,589,594	-				+0.7
2,589,594	-				+0.2
2,589,594	-				-0.1
2,589,594	-				+1.2
2,589,594	-				+0.7
2,589,599	+				+0.6
2,589,599	+				-0.9
2,589,599	+				+0.3
2,589,599	+				-0.0
2,589,599	+				+1.0
2,589,599	+				-0.9
2,589,599	+				+0.2
2,589,599	+				-2.1
2,589,599	+				+0.6
2,589,599	+				-1.7
2,589,599	+				-0.7
2,589,599	+				-0.1
2,589,599	+				-0.9
2,589,599	+				-2.0
2,589,599	+				-1.8
2,589,599	+				+2.5
2,589,599	+				+0.1
2,589,599	+				-0.5
2,589,599	+				-2.5
2,589,599	+				-1.0
2,589,599	+				+3.1
2,589,599	+				-1.7
2,589,599	+				+0.1
2,589,599	+				-0.1
2,589,599	+				-0.2
2,589,600	-				+0.5
2,589,600	-				-0.6
2,589,600	-				-1.9
2,589,600	-				-2.9
2,589,600	-				-2.3
2,589,600	-				+0.6
2,589,600	-				-3.4
2,589,600	-				+1.2
2,589,600	-				-1.9
2,589,600	-				+1.3
2,589,600	-				+1.0
2,589,600	-				-2.9
2,589,600	-				-3.1
2,589,600	-				-0.3
2,589,600	-				-2.3
2,589,600	-				-1.3
2,589,600	-				+0.9
2,589,600	-				-1.1
2,589,600	-				-1.2
2,589,600	-				+1.1
2,589,600	-				+1.5
2,589,600	-				+0.7
2,589,600	-				-0.2
2,589,600	-				+0.2
2,589,600	-				-2.2
2,589,600	-				+1.3
2,589,600	-				+0.4
2,589,600	-				-1.5
2,589,600	-				-1.3
2,589,600	-				-1.6
2,589,600	-				+0.5
2,589,600	-				-0.1
2,589,600	-				-1.8
2,589,600	-				+0.5
2,589,640	+				+0.8
2,589,640	+				+0.9
2,589,640	+				-0.6
2,589,640	+				-1.4
2,589,640	+				-0.4
2,589,640	+				+0.3
2,589,640	+				-0.4
2,589,641	-				-1.1
2,589,641	-				+0.9
2,589,641	-				+0.9
2,589,641	-				-0.9
2,589,641	-				+0.6
2,589,641	-				+0.5
2,589,641	-				+0.3
2,589,641	-				+1.1
2,589,641	-				-2.1
2,589,641	-				-0.7
2,589,641	-				-0.2
2,589,685	+				-1.6
2,589,685	+				-1.3
2,589,686	-				-1.0
2,589,686	-				-0.9
2,589,694	+				-0.0
2,589,695	-				-0.6
2,589,695	-				+2.9
2,589,707	+				+1.8
2,589,707	+				+1.5
2,589,708	-				-0.9
2,589,708	-				-0.3
2,589,708	-				+2.3
2,589,721	+				-1.6
2,589,721	+				-0.5
2,589,722	-				+1.4
2,589,722	-				-0.3
2,589,737	-				+0.2
2,589,743	+				-0.0
2,589,744	-				-2.2
2,589,764	+				+0.8
2,589,765	-				+0.1
2,589,786	+				+0.6
2,589,787	-				-0.0
2,589,787	-				-1.4
2,589,809	-				-0.2
2,589,835	+				+0.9
2,589,836	-				-1.0
2,589,899	+				+0.6
2,589,899	+				+0.9
2,589,900	-				-0.5
2,589,900	-				-0.1
2,589,900	-				-3.4
2,589,900	-				-2.4
2,589,909	+				+0.6
2,589,909	+				+0.5
2,589,910	-				-1.0
2,589,920	+				-2.6
2,589,920	+				-1.1
2,589,921	-				-1.0
2,589,921	-				+0.5
2,589,983	+				-1.5