Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.263.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.262.1 and Xcc-8004.263.1 overlap by 4 nucleotidesXcc-8004.263.1 and Xcc-8004.264.1 are separated by 103 nucleotides Xcc-8004.262.1: Xcc-8004.262.1 - Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives), at 254,971 to 256,236 Xcc-8004.262.1 Xcc-8004.263.1: Xcc-8004.263.1 - Distant homolog of E. coli HemX protein in Xanthomonadaceae, at 256,233 to 257,210 Xcc-8004.263.1 Xcc-8004.264.1: Xcc-8004.264.1 - Uroporphyrinogen-III synthase (EC 4.2.1.75), at 257,314 to 258,114 Xcc-8004.264.1 Position (kb) 256 257 258Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 255.330 kb on - strand, within Xcc-8004.262.1at 255.354 kb on - strand, within Xcc-8004.262.1at 255.384 kb on + strand, within Xcc-8004.262.1at 255.452 kb on + strand, within Xcc-8004.262.1at 255.452 kb on + strand, within Xcc-8004.262.1at 255.452 kb on + strand, within Xcc-8004.262.1at 255.453 kb on - strand, within Xcc-8004.262.1at 255.473 kb on + strand, within Xcc-8004.262.1at 255.474 kb on - strand, within Xcc-8004.262.1at 255.578 kb on + strand, within Xcc-8004.262.1at 255.578 kb on + strand, within Xcc-8004.262.1at 255.578 kb on + strand, within Xcc-8004.262.1at 255.578 kb on + strand, within Xcc-8004.262.1at 255.578 kb on + strand, within Xcc-8004.262.1at 255.579 kb on - strand, within Xcc-8004.262.1at 255.579 kb on - strand, within Xcc-8004.262.1at 255.579 kb on - strand, within Xcc-8004.262.1at 255.579 kb on - strand, within Xcc-8004.262.1at 255.579 kb on - strand, within Xcc-8004.262.1at 255.579 kb on - strand, within Xcc-8004.262.1at 255.579 kb on - strand, within Xcc-8004.262.1at 255.579 kb on - strand, within Xcc-8004.262.1at 255.579 kb on - strand, within Xcc-8004.262.1at 255.579 kb on - strand, within Xcc-8004.262.1at 255.579 kb on - strand, within Xcc-8004.262.1at 255.629 kb on + strand, within Xcc-8004.262.1at 255.629 kb on + strand, within Xcc-8004.262.1at 255.629 kb on + strand, within Xcc-8004.262.1at 255.629 kb on + strand, within Xcc-8004.262.1at 255.629 kb on + strand, within Xcc-8004.262.1at 255.630 kb on - strand, within Xcc-8004.262.1at 255.630 kb on - strand, within Xcc-8004.262.1at 255.630 kb on - strand, within Xcc-8004.262.1at 255.630 kb on - strand, within Xcc-8004.262.1at 255.630 kb on - strand, within Xcc-8004.262.1at 255.630 kb on - strand, within Xcc-8004.262.1at 255.630 kb on - strand, within Xcc-8004.262.1at 255.673 kb on + strand, within Xcc-8004.262.1at 255.673 kb on + strand, within Xcc-8004.262.1at 255.674 kb on - strand, within Xcc-8004.262.1at 256.001 kb on + strand, within Xcc-8004.262.1at 256.002 kb on - strand, within Xcc-8004.262.1at 256.106 kb on + strand, within Xcc-8004.262.1at 256.107 kb on - strand, within Xcc-8004.262.1at 256.148 kb on + strandat 256.148 kb on + strandat 256.148 kb on + strandat 256.148 kb on + strandat 256.148 kb on + strandat 256.148 kb on + strandat 256.148 kb on + strandat 256.149 kb on - strandat 256.149 kb on - strandat 256.149 kb on - strandat 256.149 kb on - strandat 256.149 kb on - strandat 256.221 kb on + strandat 256.404 kb on + strand, within Xcc-8004.263.1at 256.729 kb on + strand, within Xcc-8004.263.1at 256.729 kb on + strand, within Xcc-8004.263.1at 256.729 kb on + strand, within Xcc-8004.263.1at 256.730 kb on - strand, within Xcc-8004.263.1at 256.730 kb on - strand, within Xcc-8004.263.1at 256.730 kb on - strand, within Xcc-8004.263.1at 256.730 kb on - strand, within Xcc-8004.263.1at 256.774 kb on + strand, within Xcc-8004.263.1at 256.775 kb on - strand, within Xcc-8004.263.1at 256.775 kb on - strand, within Xcc-8004.263.1at 256.775 kb on - strand, within Xcc-8004.263.1at 257.095 kb on + strand, within Xcc-8004.263.1at 257.095 kb on + strand, within Xcc-8004.263.1at 257.096 kb on - strand, within Xcc-8004.263.1at 257.096 kb on - strand, within Xcc-8004.263.1at 257.096 kb on - strand, within Xcc-8004.263.1at 257.096 kb on - strand, within Xcc-8004.263.1at 257.096 kb on - strand, within Xcc-8004.263.1at 257.096 kb on - strand, within Xcc-8004.263.1at 257.096 kb on - strand, within Xcc-8004.263.1at 258.099 kb on + strandat 258.099 kb on + strandat 258.099 kb on + strandat 258.099 kb on + strandat 258.099 kb on + strandat 258.100 kb on - strandat 258.116 kb on + strandat 258.116 kb on + strandat 258.116 kb on + strandat 258.116 kb on + strandat 258.116 kb on + strandat 258.116 kb on + strandat 258.116 kb on + strandat 258.116 kb on + strandat 258.116 kb on + strandat 258.116 kb on + strandat 258.116 kb on + strandat 258.117 kb on - strandat 258.117 kb on - strandat 258.117 kb on - strandat 258.117 kb on - strandat 258.117 kb on - strandat 258.117 kb on - strandat 258.117 kb on - strandat 258.117 kb on - strandat 258.158 kb on + strandat 258.158 kb on + strandat 258.159 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
remove
255,330 - Xcc-8004.262.1 0.28 +1.6
255,354 - Xcc-8004.262.1 0.30 +2.1
255,384 + Xcc-8004.262.1 0.33 +0.4
255,452 + Xcc-8004.262.1 0.38 +0.2
255,452 + Xcc-8004.262.1 0.38 -1.3
255,452 + Xcc-8004.262.1 0.38 +0.4
255,453 - Xcc-8004.262.1 0.38 -1.4
255,473 + Xcc-8004.262.1 0.40 -1.5
255,474 - Xcc-8004.262.1 0.40 -0.6
255,578 + Xcc-8004.262.1 0.48 -2.5
255,578 + Xcc-8004.262.1 0.48 -1.7
255,578 + Xcc-8004.262.1 0.48 -0.5
255,578 + Xcc-8004.262.1 0.48 -0.4
255,578 + Xcc-8004.262.1 0.48 +0.7
255,579 - Xcc-8004.262.1 0.48 +1.2
255,579 - Xcc-8004.262.1 0.48 +0.6
255,579 - Xcc-8004.262.1 0.48 +1.8
255,579 - Xcc-8004.262.1 0.48 -1.2
255,579 - Xcc-8004.262.1 0.48 +0.1
255,579 - Xcc-8004.262.1 0.48 +0.8
255,579 - Xcc-8004.262.1 0.48 -0.4
255,579 - Xcc-8004.262.1 0.48 +1.5
255,579 - Xcc-8004.262.1 0.48 -0.4
255,579 - Xcc-8004.262.1 0.48 -2.0
255,579 - Xcc-8004.262.1 0.48 -1.1
255,629 + Xcc-8004.262.1 0.52 +1.7
255,629 + Xcc-8004.262.1 0.52 -2.6
255,629 + Xcc-8004.262.1 0.52 +0.1
255,629 + Xcc-8004.262.1 0.52 +0.2
255,629 + Xcc-8004.262.1 0.52 -2.4
255,630 - Xcc-8004.262.1 0.52 -0.9
255,630 - Xcc-8004.262.1 0.52 -0.5
255,630 - Xcc-8004.262.1 0.52 -2.3
255,630 - Xcc-8004.262.1 0.52 -1.9
255,630 - Xcc-8004.262.1 0.52 +1.5
255,630 - Xcc-8004.262.1 0.52 -1.2
255,630 - Xcc-8004.262.1 0.52 -1.2
255,673 + Xcc-8004.262.1 0.55 -0.5
255,673 + Xcc-8004.262.1 0.55 -0.6
255,674 - Xcc-8004.262.1 0.56 +1.0
256,001 + Xcc-8004.262.1 0.81 -0.5
256,002 - Xcc-8004.262.1 0.81 -3.4
256,106 + Xcc-8004.262.1 0.90 +0.8
256,107 - Xcc-8004.262.1 0.90 -1.9
256,148 + +0.5
256,148 + +0.6
256,148 + +1.2
256,148 + -0.3
256,148 + -0.2
256,148 + +0.3
256,148 + +0.6
256,149 - -2.1
256,149 - +0.1
256,149 - +1.2
256,149 - +0.8
256,149 - +1.8
256,221 + -0.9
256,404 + Xcc-8004.263.1 0.17 -0.9
256,729 + Xcc-8004.263.1 0.51 +5.0
256,729 + Xcc-8004.263.1 0.51 +2.2
256,729 + Xcc-8004.263.1 0.51 -1.1
256,730 - Xcc-8004.263.1 0.51 -2.0
256,730 - Xcc-8004.263.1 0.51 +2.1
256,730 - Xcc-8004.263.1 0.51 -0.7
256,730 - Xcc-8004.263.1 0.51 +1.5
256,774 + Xcc-8004.263.1 0.55 -0.2
256,775 - Xcc-8004.263.1 0.55 +0.2
256,775 - Xcc-8004.263.1 0.55 +1.1
256,775 - Xcc-8004.263.1 0.55 +3.2
257,095 + Xcc-8004.263.1 0.88 -1.3
257,095 + Xcc-8004.263.1 0.88 +1.1
257,096 - Xcc-8004.263.1 0.88 +1.5
257,096 - Xcc-8004.263.1 0.88 +0.9
257,096 - Xcc-8004.263.1 0.88 -1.7
257,096 - Xcc-8004.263.1 0.88 +1.0
257,096 - Xcc-8004.263.1 0.88 -1.2
257,096 - Xcc-8004.263.1 0.88 -2.8
257,096 - Xcc-8004.263.1 0.88 -1.7
258,099 + +0.2
258,099 + +0.5
258,099 + +0.5
258,099 + +0.7
258,099 + +0.2
258,100 - +0.7
258,116 + -2.0
258,116 + -1.1
258,116 + +0.5
258,116 + -0.0
258,116 + -0.0
258,116 + +1.7
258,116 + -1.8
258,116 + -0.3
258,116 + +1.7
258,116 + -0.6
258,116 + -1.7
258,117 - -0.6
258,117 - +0.1
258,117 - +3.7
258,117 - -2.4
258,117 - -3.6
258,117 - +1.8
258,117 - +0.6
258,117 - -1.1
258,158 + -0.4
258,158 + +0.8
258,159 - -2.5

Or see this region's nucleotide sequence