Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.249.1 and Xcc-8004.251.1 are separated by 265 nucleotides Xcc-8004.251.1 and Xcc-8004.252.1 overlap by 8 nucleotides
Xcc-8004.249.1: Xcc-8004.249.1 - Ammonium transporter, at 243,912 to 245,387
Xcc-8004.249.1
Xcc-8004.251.1: Xcc-8004.251.1 - Nitrogen regulation protein NtrB (EC 2.7.13.3), at 245,653 to 246,708
Xcc-8004.251.1
Xcc-8004.252.1: Xcc-8004.252.1 - Nitrogen regulation protein NtrC, at 246,701 to 248,131
Xcc-8004.252.1
Position (kb) 245
246
247 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 244.707 kb on + strand, within Xcc-8004.249.1 at 244.707 kb on + strand, within Xcc-8004.249.1 at 244.707 kb on + strand, within Xcc-8004.249.1 at 244.708 kb on - strand, within Xcc-8004.249.1 at 244.708 kb on - strand, within Xcc-8004.249.1 at 244.708 kb on - strand, within Xcc-8004.249.1 at 244.708 kb on - strand, within Xcc-8004.249.1 at 245.202 kb on + strand, within Xcc-8004.249.1 at 245.202 kb on + strand, within Xcc-8004.249.1 at 245.203 kb on - strand, within Xcc-8004.249.1 at 245.203 kb on - strand, within Xcc-8004.249.1 at 245.203 kb on - strand, within Xcc-8004.249.1 at 245.376 kb on + strand at 245.376 kb on + strand at 245.376 kb on + strand at 245.376 kb on + strand at 245.377 kb on - strand at 245.377 kb on - strand at 245.377 kb on - strand at 245.377 kb on - strand at 245.377 kb on - strand at 245.377 kb on - strand at 245.377 kb on - strand at 245.377 kb on - strand at 245.641 kb on + strand at 245.642 kb on - strand at 245.642 kb on - strand at 245.642 kb on - strand at 245.642 kb on - strand at 245.691 kb on - strand at 245.695 kb on - strand at 245.695 kb on - strand at 246.209 kb on + strand, within Xcc-8004.251.1 at 246.210 kb on - strand, within Xcc-8004.251.1 at 246.307 kb on + strand, within Xcc-8004.251.1 at 246.307 kb on + strand, within Xcc-8004.251.1 at 246.307 kb on + strand, within Xcc-8004.251.1 at 246.308 kb on - strand, within Xcc-8004.251.1 at 246.308 kb on - strand, within Xcc-8004.251.1 at 246.308 kb on - strand, within Xcc-8004.251.1 at 246.308 kb on - strand, within Xcc-8004.251.1 at 246.622 kb on + strand at 246.623 kb on - strand at 246.623 kb on - strand at 246.623 kb on - strand at 246.623 kb on - strand at 246.720 kb on + strand at 246.969 kb on - strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 244,707 + Xcc-8004.249.1 0.54 -2.9 244,707 + Xcc-8004.249.1 0.54 +1.8 244,707 + Xcc-8004.249.1 0.54 -2.4 244,708 - Xcc-8004.249.1 0.54 -0.5 244,708 - Xcc-8004.249.1 0.54 -0.5 244,708 - Xcc-8004.249.1 0.54 +5.5 244,708 - Xcc-8004.249.1 0.54 -0.1 245,202 + Xcc-8004.249.1 0.87 -1.3 245,202 + Xcc-8004.249.1 0.87 +0.5 245,203 - Xcc-8004.249.1 0.87 -0.2 245,203 - Xcc-8004.249.1 0.87 +0.2 245,203 - Xcc-8004.249.1 0.87 -3.0 245,376 + -4.2 245,376 + -2.6 245,376 + -2.0 245,376 + -2.9 245,377 - -0.2 245,377 - +0.6 245,377 - -2.3 245,377 - -0.7 245,377 - +2.2 245,377 - +1.9 245,377 - +0.5 245,377 - -0.7 245,641 + -2.4 245,642 - +0.7 245,642 - +2.2 245,642 - +0.7 245,642 - -1.1 245,691 - -0.1 245,695 - -0.7 245,695 - +1.5 246,209 + Xcc-8004.251.1 0.53 -0.4 246,210 - Xcc-8004.251.1 0.53 -1.5 246,307 + Xcc-8004.251.1 0.62 -1.4 246,307 + Xcc-8004.251.1 0.62 -1.3 246,307 + Xcc-8004.251.1 0.62 -1.4 246,308 - Xcc-8004.251.1 0.62 +0.4 246,308 - Xcc-8004.251.1 0.62 +0.0 246,308 - Xcc-8004.251.1 0.62 -1.8 246,308 - Xcc-8004.251.1 0.62 +2.8 246,622 + +0.2 246,623 - +2.6 246,623 - -0.1 246,623 - -1.6 246,623 - -0.3 246,720 + -0.1 246,969 - Xcc-8004.252.1 0.19 +1.9 247,395 + Xcc-8004.252.1 0.48 -0.4 247,395 + Xcc-8004.252.1 0.48 -1.8 247,395 + Xcc-8004.252.1 0.48 +0.5 247,395 + Xcc-8004.252.1 0.48 +0.4 247,395 + Xcc-8004.252.1 0.48 +0.4 247,395 + Xcc-8004.252.1 0.48 -1.0 247,395 + Xcc-8004.252.1 0.48 +0.6 247,395 + Xcc-8004.252.1 0.48 -0.8 247,395 + Xcc-8004.252.1 0.48 +0.8 247,396 - Xcc-8004.252.1 0.49 -0.7 247,396 - Xcc-8004.252.1 0.49 +2.1 247,396 - Xcc-8004.252.1 0.49 +1.7 247,396 - Xcc-8004.252.1 0.49 -0.6 247,396 - Xcc-8004.252.1 0.49 -2.0 247,396 - Xcc-8004.252.1 0.49 -0.2 247,396 - Xcc-8004.252.1 0.49 -1.5 247,396 - Xcc-8004.252.1 0.49 +0.1 247,396 - Xcc-8004.252.1 0.49 -1.9
Or see this region's nucleotide sequence