Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2191.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
2,135,421	+				-0.3
2,135,421	+				-0.3
2,135,421	+				-2.8
2,135,421	+				+1.6
2,135,422	-				-2.8
2,135,422	-				-1.3
2,135,422	-				-1.6
2,135,422	-				-2.3
2,135,422	-				+1.0
2,135,422	-				+2.1
2,135,526	-				+0.3
2,135,526	-				-0.3
2,135,526	-				+0.4
2,135,632	-				+0.6
2,135,632	-				+0.5
2,135,696	-				-2.2
2,135,696	-				-0.3
2,135,696	-				-0.1
2,135,696	-				-3.5
2,135,696	-				+0.5
2,135,696	-				-0.5
2,135,696	-				-0.8
2,135,754	-				-1.5
2,135,827	+				+0.3
2,135,827	+				-3.0
2,135,827	+				+0.6
2,135,827	+				-0.6
2,135,827	+				-0.0
2,135,828	-				-1.6
2,135,828	-				-2.3
2,135,828	-				-0.0
2,135,828	-				-0.5
2,135,828	-				-1.3
2,135,828	-				+1.3
2,135,828	-				-1.7
2,135,853	+				+0.4
2,135,853	+				-0.5
2,135,853	+				+1.0
2,135,853	+				-1.9
2,135,853	+				+0.7
2,135,853	+				+0.9
2,135,853	+				+0.5
2,135,853	+				+2.7
2,135,854	-				-0.7
2,135,854	-				+0.6
2,135,854	-				-0.7
2,135,854	-				+0.6
2,135,854	-				+0.6
2,135,857	+				+1.4
2,135,857	+				-1.3
2,135,858	-				-0.2
2,135,858	-				-0.8
2,135,858	-				+0.9
2,135,932	+				+1.5
2,135,932	+				-2.6
2,135,932	+				+0.7
2,135,932	+				+0.5
2,135,933	-				+1.2
2,135,989	+				-0.6
2,135,989	+				-0.8
2,135,989	+				-1.2
2,135,989	+				-2.4
2,135,990	-				+0.9
2,135,990	-				+0.1
2,135,990	-				-3.1
2,135,990	-				+2.0
2,135,990	-				-1.9
2,135,990	-				-0.1
2,135,990	-				+0.3
2,135,990	-				-1.0
2,135,990	-				+0.3
2,135,990	-				-1.3
2,135,990	-				+0.5
2,135,990	-				+0.1
2,135,990	-				-2.3
2,135,990	-				-2.4
2,136,001	+				-0.0
2,136,001	+				-0.2
2,136,001	+				-0.6
2,136,001	+				+0.9
2,136,001	+				+0.3
2,136,001	+				-1.6
2,136,001	+				+1.0
2,136,002	-				-2.6
2,136,002	-				-1.1
2,136,002	-				+0.8
2,136,015	+				+0.1
2,136,015	+				-0.9
2,136,015	+				+0.8
2,136,015	+				+1.4
2,136,016	-				-2.6
2,136,016	-				+0.4
2,136,016	-				-1.6
2,136,016	-				+1.0
2,136,016	-				+3.4
2,136,016	-				+0.7
2,136,016	-				-1.0
2,136,016	-				-1.4
2,136,016	-				+1.4
2,136,016	-				+1.8
2,136,016	-				+0.1
2,136,019	+				-1.6
2,136,019	+				+1.7
2,136,019	+				-0.3
2,136,019	+				-1.3
2,136,019	+				-2.9
2,136,019	+				+1.0
2,136,019	+				+0.7
2,136,019	+				-0.8
2,136,019	+				+0.1
2,136,019	+				-2.4
2,136,020	-				-1.4
2,136,020	-				-0.7
2,136,020	-				-0.6
2,136,020	-				-2.3
2,136,020	-				-0.7
2,136,020	-				+0.5
2,136,020	-				-0.4
2,136,020	-				-2.6
2,136,082	-				-1.3
2,136,736	+		Xcc-8004.2191.1	0.73	+0.6
2,136,736	+		Xcc-8004.2191.1	0.73	+0.9
2,136,736	+		Xcc-8004.2191.1	0.73	-1.3
2,136,736	+		Xcc-8004.2191.1	0.73	+0.1
2,136,736	+		Xcc-8004.2191.1	0.73	-2.0
2,136,736	+		Xcc-8004.2191.1	0.73	+1.8
2,136,736	+		Xcc-8004.2191.1	0.73	+0.8
2,136,736	+		Xcc-8004.2191.1	0.73	+1.6
2,136,736	+		Xcc-8004.2191.1	0.73	-1.1
2,136,736	+		Xcc-8004.2191.1	0.73	-2.7
2,136,736	+		Xcc-8004.2191.1	0.73	+0.4
2,136,736	+		Xcc-8004.2191.1	0.73	-0.4
2,136,736	+		Xcc-8004.2191.1	0.73	+1.5
2,136,736	+		Xcc-8004.2191.1	0.73	-0.1
2,136,736	+		Xcc-8004.2191.1	0.73	+2.8
2,136,736	+		Xcc-8004.2191.1	0.73	+0.6
2,136,736	+		Xcc-8004.2191.1	0.73	+1.5
2,136,736	+		Xcc-8004.2191.1	0.73	+1.8
2,136,736	+		Xcc-8004.2191.1	0.73	+0.4
2,136,736	+		Xcc-8004.2191.1	0.73	+0.5
2,136,737	-		Xcc-8004.2191.1	0.73	-1.2
2,136,737	-		Xcc-8004.2191.1	0.73	+1.3
2,136,737	-		Xcc-8004.2191.1	0.73	-3.6
2,136,737	-		Xcc-8004.2191.1	0.73	+2.2
2,136,737	-		Xcc-8004.2191.1	0.73	+1.3
2,136,737	-		Xcc-8004.2191.1	0.73	+2.9
2,136,737	-		Xcc-8004.2191.1	0.73	+0.8
2,136,737	-		Xcc-8004.2191.1	0.73	+0.5
2,136,737	-		Xcc-8004.2191.1	0.73	-1.4
2,136,737	-		Xcc-8004.2191.1	0.73	+1.8
2,136,737	-		Xcc-8004.2191.1	0.73	-2.8
2,136,737	-		Xcc-8004.2191.1	0.73	+0.8
2,136,737	-		Xcc-8004.2191.1	0.73	-1.6
2,136,737	-		Xcc-8004.2191.1	0.73	-1.8
2,136,737	-		Xcc-8004.2191.1	0.73	+1.3
2,136,932	+				-1.2
2,136,932	+				-2.5
2,136,932	+				-2.0
2,136,932	+				+1.0
2,136,933	-				+0.0
2,136,933	-				+0.0
2,136,933	-				+0.4
2,136,933	-				-2.6
2,136,933	-				-1.3
2,136,933	-				-0.2
2,137,000	+				-1.5
2,137,000	+				-0.6
2,137,000	+				+0.3
2,137,000	+				+0.4
2,137,000	+				-2.7
2,137,000	+				-1.4
2,137,000	+				-3.1
2,137,000	+				+0.4
2,137,001	-				+0.8
2,137,001	-				-3.0
2,137,001	-				-2.9
2,137,001	-				+1.9
2,137,001	-				+1.6
2,137,001	-				-1.4
2,137,001	-				-1.7
2,137,001	-				+1.2
2,137,077	+				-0.2
2,137,077	+				+1.7
2,137,077	+				+0.1
2,137,077	+				-1.6
2,137,077	+				-0.9
2,137,077	+				-0.4
2,137,078	-				-0.0
2,137,078	-				+0.9
2,137,078	-				-0.2
2,137,078	-				-2.0
2,137,081	-				-2.4
2,137,081	-				+0.7
2,137,089	+				+1.3
2,137,089	+				+0.2
2,137,090	-				+2.8
2,137,218	+				-2.3
2,137,218	+				-0.5
2,137,218	+				+0.5
2,137,218	+				+5.3
2,137,219	-				+0.7
2,137,219	-				-0.4
2,137,219	-				-1.1
2,137,501	+		Xcc-8004.2192.1	0.21	-0.5
2,137,501	+		Xcc-8004.2192.1	0.21	+1.6
2,137,501	+		Xcc-8004.2192.1	0.21	+0.0
2,137,501	+		Xcc-8004.2192.1	0.21	+0.4
2,137,502	-		Xcc-8004.2192.1	0.21	+0.3
2,137,502	-		Xcc-8004.2192.1	0.21	-2.7
2,137,502	-		Xcc-8004.2192.1	0.21	+1.3
2,137,502	-		Xcc-8004.2192.1	0.21	-1.2
2,137,502	-		Xcc-8004.2192.1	0.21	-2.5
2,137,502	-		Xcc-8004.2192.1	0.21	+0.9
2,137,502	-		Xcc-8004.2192.1	0.21	+2.0
2,137,533	+		Xcc-8004.2192.1	0.23	-1.6
2,137,533	+		Xcc-8004.2192.1	0.23	-0.1
2,137,533	+		Xcc-8004.2192.1	0.23	-0.4
2,137,533	+		Xcc-8004.2192.1	0.23	-2.6
2,137,533	+		Xcc-8004.2192.1	0.23	+1.1
2,137,533	+		Xcc-8004.2192.1	0.23	-1.0
2,137,533	+		Xcc-8004.2192.1	0.23	+0.4
2,137,533	+		Xcc-8004.2192.1	0.23	+4.3
2,137,534	-		Xcc-8004.2192.1	0.23	-0.0
2,137,534	-		Xcc-8004.2192.1	0.23	-0.1
2,137,534	-		Xcc-8004.2192.1	0.23	+1.8
2,137,584	+		Xcc-8004.2192.1	0.27	-0.3
2,137,584	+		Xcc-8004.2192.1	0.27	-1.9
2,137,584	+		Xcc-8004.2192.1	0.27	-0.3
2,137,584	+		Xcc-8004.2192.1	0.27	+1.3
2,137,584	+		Xcc-8004.2192.1	0.27	-1.3
2,137,584	+		Xcc-8004.2192.1	0.27	+0.3
2,137,584	+		Xcc-8004.2192.1	0.27	-0.7
2,137,584	+		Xcc-8004.2192.1	0.27	+0.6
2,137,584	+		Xcc-8004.2192.1	0.27	-0.2
2,137,584	+		Xcc-8004.2192.1	0.27	-2.6
2,137,584	+		Xcc-8004.2192.1	0.27	-2.4
2,137,585	-		Xcc-8004.2192.1	0.27	-0.8
2,137,585	-		Xcc-8004.2192.1	0.27	-0.4
2,137,585	-		Xcc-8004.2192.1	0.27	+1.4
2,137,585	-		Xcc-8004.2192.1	0.27	-1.2
2,137,590	+		Xcc-8004.2192.1	0.28	-2.8
2,137,590	+		Xcc-8004.2192.1	0.28	-0.9
2,137,591	-		Xcc-8004.2192.1	0.28	-1.6
2,137,591	-		Xcc-8004.2192.1	0.28	+0.3
2,137,591	-		Xcc-8004.2192.1	0.28	-1.6
2,137,840	-		Xcc-8004.2192.1	0.46	-0.3
2,137,840	-		Xcc-8004.2192.1	0.46	+0.8
2,137,949	+		Xcc-8004.2192.1	0.54	-1.6
2,137,949	+		Xcc-8004.2192.1	0.54	+0.2
2,137,950	-		Xcc-8004.2192.1	0.54	-3.2
2,137,950	-		Xcc-8004.2192.1	0.54	+1.7