Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.197.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.196.1 and Xcc-8004.197.1 are separated by 204 nucleotidesXcc-8004.197.1 and Xcc-8004.198.1 are separated by 139 nucleotides Xcc-8004.196.1: Xcc-8004.196.1 - L-fucose dehydrogenase, at 187,969 to 189,117 Xcc-8004.196.1 Xcc-8004.197.1: Xcc-8004.197.1 - rhamnogalacturonan acetylesterase, at 189,322 to 190,158 Xcc-8004.197.1 Xcc-8004.198.1: Xcc-8004.198.1 - carboxylesterase type B, at 190,298 to 191,920 Xcc-8004.198.1 Position (kb) 189 190 191Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 188.335 kb on + strand, within Xcc-8004.196.1at 188.335 kb on + strand, within Xcc-8004.196.1at 188.335 kb on + strand, within Xcc-8004.196.1at 188.335 kb on + strand, within Xcc-8004.196.1at 188.335 kb on + strand, within Xcc-8004.196.1at 188.335 kb on + strand, within Xcc-8004.196.1at 188.335 kb on + strand, within Xcc-8004.196.1at 188.335 kb on + strand, within Xcc-8004.196.1at 188.336 kb on - strand, within Xcc-8004.196.1at 188.336 kb on - strand, within Xcc-8004.196.1at 188.336 kb on - strand, within Xcc-8004.196.1at 188.336 kb on - strand, within Xcc-8004.196.1at 188.336 kb on - strand, within Xcc-8004.196.1at 188.336 kb on - strand, within Xcc-8004.196.1at 188.336 kb on - strand, within Xcc-8004.196.1at 188.435 kb on - strand, within Xcc-8004.196.1at 188.509 kb on + strand, within Xcc-8004.196.1at 188.509 kb on + strand, within Xcc-8004.196.1at 188.509 kb on + strand, within Xcc-8004.196.1at 188.510 kb on - strand, within Xcc-8004.196.1at 188.510 kb on - strand, within Xcc-8004.196.1at 188.510 kb on - strand, within Xcc-8004.196.1at 188.510 kb on - strand, within Xcc-8004.196.1at 188.848 kb on + strand, within Xcc-8004.196.1at 188.849 kb on - strand, within Xcc-8004.196.1at 188.849 kb on - strand, within Xcc-8004.196.1at 188.931 kb on + strand, within Xcc-8004.196.1at 188.932 kb on - strand, within Xcc-8004.196.1at 188.932 kb on - strand, within Xcc-8004.196.1at 189.159 kb on + strandat 189.179 kb on + strandat 189.179 kb on + strandat 189.179 kb on + strandat 189.180 kb on - strandat 189.180 kb on - strandat 189.180 kb on - strandat 189.180 kb on - strandat 189.180 kb on - strandat 189.208 kb on + strandat 189.209 kb on - strandat 189.423 kb on - strand, within Xcc-8004.197.1at 189.423 kb on - strand, within Xcc-8004.197.1at 189.827 kb on + strand, within Xcc-8004.197.1at 189.827 kb on + strand, within Xcc-8004.197.1at 189.827 kb on + strand, within Xcc-8004.197.1at 189.828 kb on - strand, within Xcc-8004.197.1at 189.828 kb on - strand, within Xcc-8004.197.1at 189.828 kb on - strand, within Xcc-8004.197.1at 189.996 kb on + strand, within Xcc-8004.197.1at 189.996 kb on + strand, within Xcc-8004.197.1at 189.997 kb on - strand, within Xcc-8004.197.1at 189.997 kb on - strand, within Xcc-8004.197.1at 190.243 kb on + strandat 190.244 kb on - strandat 190.244 kb on - strandat 190.269 kb on + strandat 190.269 kb on + strandat 190.269 kb on + strandat 190.270 kb on - strandat 190.270 kb on - strandat 190.270 kb on - strandat 190.270 kb on - strandat 190.285 kb on + strandat 190.335 kb on + strandat 190.335 kb on + strandat 190.336 kb on - strandat 190.419 kb on + strandat 190.420 kb on - strandat 190.550 kb on - strand, within Xcc-8004.198.1at 190.550 kb on - strand, within Xcc-8004.198.1at 190.573 kb on + strand, within Xcc-8004.198.1at 190.635 kb on + strand, within Xcc-8004.198.1at 190.636 kb on - strand, within Xcc-8004.198.1at 190.636 kb on - strand, within Xcc-8004.198.1at 190.636 kb on - strand, within Xcc-8004.198.1at 190.743 kb on + strand, within Xcc-8004.198.1at 190.743 kb on + strand, within Xcc-8004.198.1at 190.743 kb on + strand, within Xcc-8004.198.1at 190.744 kb on - strand, within Xcc-8004.198.1at 190.752 kb on + strand, within Xcc-8004.198.1at 190.800 kb on + strand, within Xcc-8004.198.1at 190.800 kb on + strand, within Xcc-8004.198.1at 190.800 kb on + strand, within Xcc-8004.198.1at 190.800 kb on + strand, within Xcc-8004.198.1at 190.800 kb on + strand, within Xcc-8004.198.1at 190.801 kb on - strand, within Xcc-8004.198.1at 190.801 kb on - strand, within Xcc-8004.198.1at 190.801 kb on - strand, within Xcc-8004.198.1at 190.801 kb on - strand, within Xcc-8004.198.1at 190.801 kb on - strand, within Xcc-8004.198.1at 190.894 kb on + strand, within Xcc-8004.198.1at 190.992 kb on + strand, within Xcc-8004.198.1at 190.992 kb on + strand, within Xcc-8004.198.1at 190.993 kb on - strand, within Xcc-8004.198.1at 190.993 kb on - strand, within Xcc-8004.198.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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188,335 + Xcc-8004.196.1 0.32 -0.4
188,335 + Xcc-8004.196.1 0.32 -2.5
188,335 + Xcc-8004.196.1 0.32 +1.4
188,335 + Xcc-8004.196.1 0.32 -0.5
188,335 + Xcc-8004.196.1 0.32 -2.7
188,335 + Xcc-8004.196.1 0.32 -1.0
188,335 + Xcc-8004.196.1 0.32 +0.2
188,335 + Xcc-8004.196.1 0.32 +0.9
188,336 - Xcc-8004.196.1 0.32 +3.1
188,336 - Xcc-8004.196.1 0.32 -0.5
188,336 - Xcc-8004.196.1 0.32 +1.0
188,336 - Xcc-8004.196.1 0.32 +1.5
188,336 - Xcc-8004.196.1 0.32 -0.1
188,336 - Xcc-8004.196.1 0.32 +1.3
188,336 - Xcc-8004.196.1 0.32 +2.5
188,435 - Xcc-8004.196.1 0.41 -3.2
188,509 + Xcc-8004.196.1 0.47 -1.2
188,509 + Xcc-8004.196.1 0.47 -1.2
188,509 + Xcc-8004.196.1 0.47 +0.1
188,510 - Xcc-8004.196.1 0.47 -2.5
188,510 - Xcc-8004.196.1 0.47 +1.0
188,510 - Xcc-8004.196.1 0.47 +0.2
188,510 - Xcc-8004.196.1 0.47 +1.9
188,848 + Xcc-8004.196.1 0.77 -0.8
188,849 - Xcc-8004.196.1 0.77 +0.8
188,849 - Xcc-8004.196.1 0.77 +1.3
188,931 + Xcc-8004.196.1 0.84 -0.9
188,932 - Xcc-8004.196.1 0.84 +0.5
188,932 - Xcc-8004.196.1 0.84 -0.4
189,159 + +0.5
189,179 + -1.8
189,179 + +0.1
189,179 + -0.7
189,180 - +1.0
189,180 - +2.3
189,180 - -0.5
189,180 - -0.1
189,180 - +1.1
189,208 + +1.7
189,209 - -1.4
189,423 - Xcc-8004.197.1 0.12 +1.5
189,423 - Xcc-8004.197.1 0.12 +1.1
189,827 + Xcc-8004.197.1 0.60 +1.9
189,827 + Xcc-8004.197.1 0.60 -1.2
189,827 + Xcc-8004.197.1 0.60 +1.5
189,828 - Xcc-8004.197.1 0.60 -1.6
189,828 - Xcc-8004.197.1 0.60 -1.6
189,828 - Xcc-8004.197.1 0.60 +2.2
189,996 + Xcc-8004.197.1 0.81 +0.7
189,996 + Xcc-8004.197.1 0.81 +0.4
189,997 - Xcc-8004.197.1 0.81 +1.1
189,997 - Xcc-8004.197.1 0.81 +1.1
190,243 + +0.7
190,244 - -3.8
190,244 - -0.0
190,269 + -2.0
190,269 + +1.0
190,269 + -0.7
190,270 - +0.9
190,270 - -0.9
190,270 - +1.4
190,270 - -0.1
190,285 + +0.5
190,335 + -0.3
190,335 + +0.6
190,336 - +0.6
190,419 + -1.5
190,420 - +0.9
190,550 - Xcc-8004.198.1 0.16 -0.6
190,550 - Xcc-8004.198.1 0.16 -0.3
190,573 + Xcc-8004.198.1 0.17 +1.8
190,635 + Xcc-8004.198.1 0.21 -0.2
190,636 - Xcc-8004.198.1 0.21 -0.5
190,636 - Xcc-8004.198.1 0.21 -0.7
190,636 - Xcc-8004.198.1 0.21 +2.0
190,743 + Xcc-8004.198.1 0.27 +0.2
190,743 + Xcc-8004.198.1 0.27 -0.0
190,743 + Xcc-8004.198.1 0.27 -0.2
190,744 - Xcc-8004.198.1 0.27 +0.4
190,752 + Xcc-8004.198.1 0.28 -2.7
190,800 + Xcc-8004.198.1 0.31 -2.1
190,800 + Xcc-8004.198.1 0.31 +0.1
190,800 + Xcc-8004.198.1 0.31 +0.9
190,800 + Xcc-8004.198.1 0.31 -1.5
190,800 + Xcc-8004.198.1 0.31 -0.0
190,801 - Xcc-8004.198.1 0.31 +1.8
190,801 - Xcc-8004.198.1 0.31 -0.3
190,801 - Xcc-8004.198.1 0.31 -0.1
190,801 - Xcc-8004.198.1 0.31 +1.7
190,801 - Xcc-8004.198.1 0.31 -0.8
190,894 + Xcc-8004.198.1 0.37 -0.4
190,992 + Xcc-8004.198.1 0.43 -1.5
190,992 + Xcc-8004.198.1 0.43 -2.7
190,993 - Xcc-8004.198.1 0.43 -2.2
190,993 - Xcc-8004.198.1 0.43 -2.8

Or see this region's nucleotide sequence