Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1933.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.1930.1 and Xcc-8004.1931.1 are separated by 26 nucleotidesXcc-8004.1931.1 and Xcc-8004.1933.1 are separated by 342 nucleotidesXcc-8004.1933.1 and Xcc-8004.1934.1 are separated by 27 nucleotidesXcc-8004.1934.1 and Xcc-8004.1935.1 overlap by 4 nucleotides Xcc-8004.1930.1: Xcc-8004.1930.1 - Deoxycytidine triphosphate deaminase (EC 3.5.4.13), at 1,865,033 to 1,865,602 Xcc-8004.1930.1 Xcc-8004.1931.1: Xcc-8004.1931.1 - FIG01209787: hypothetical protein, at 1,865,629 to 1,865,814 Xcc-8004.1931.1 Xcc-8004.1933.1: Xcc-8004.1933.1 - FIG01209679: hypothetical protein, at 1,866,157 to 1,866,324 Xcc-8004.1933.1 Xcc-8004.1934.1: Xcc-8004.1934.1 - Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 1,866,352 to 1,866,789 Xcc-8004.1934.1 Xcc-8004.1935.1: Xcc-8004.1935.1 - Dienelactone hydrolase family, at 1,866,786 to 1,867,448 Xcc-8004.1935.1 Position (kb) 1866 1867Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 1865.764 kb on + strand, within Xcc-8004.1931.1at 1865.764 kb on + strand, within Xcc-8004.1931.1at 1865.764 kb on + strand, within Xcc-8004.1931.1at 1865.764 kb on + strand, within Xcc-8004.1931.1at 1865.764 kb on + strand, within Xcc-8004.1931.1at 1865.764 kb on + strand, within Xcc-8004.1931.1at 1865.764 kb on + strand, within Xcc-8004.1931.1at 1865.765 kb on - strand, within Xcc-8004.1931.1at 1865.829 kb on + strandat 1865.829 kb on + strandat 1865.830 kb on - strandat 1865.940 kb on - strandat 1866.016 kb on - strandat 1866.051 kb on - strandat 1866.261 kb on + strand, within Xcc-8004.1933.1at 1866.261 kb on + strand, within Xcc-8004.1933.1at 1866.262 kb on - strand, within Xcc-8004.1933.1at 1866.854 kb on - strand, within Xcc-8004.1935.1at 1866.854 kb on - strand, within Xcc-8004.1935.1at 1866.854 kb on - strand, within Xcc-8004.1935.1at 1866.854 kb on - strand, within Xcc-8004.1935.1at 1867.026 kb on - strand, within Xcc-8004.1935.1at 1867.026 kb on - strand, within Xcc-8004.1935.1at 1867.039 kb on + strand, within Xcc-8004.1935.1at 1867.039 kb on + strand, within Xcc-8004.1935.1at 1867.042 kb on + strand, within Xcc-8004.1935.1at 1867.042 kb on + strand, within Xcc-8004.1935.1at 1867.042 kb on + strand, within Xcc-8004.1935.1at 1867.042 kb on + strand, within Xcc-8004.1935.1at 1867.043 kb on - strand, within Xcc-8004.1935.1at 1867.043 kb on - strand, within Xcc-8004.1935.1at 1867.043 kb on - strand, within Xcc-8004.1935.1at 1867.043 kb on - strand, within Xcc-8004.1935.1at 1867.043 kb on - strand, within Xcc-8004.1935.1at 1867.043 kb on - strand, within Xcc-8004.1935.1at 1867.043 kb on - strand, within Xcc-8004.1935.1at 1867.105 kb on + strand, within Xcc-8004.1935.1at 1867.105 kb on + strand, within Xcc-8004.1935.1at 1867.303 kb on + strand, within Xcc-8004.1935.1at 1867.303 kb on + strand, within Xcc-8004.1935.1at 1867.304 kb on - strand, within Xcc-8004.1935.1at 1867.304 kb on - strand, within Xcc-8004.1935.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
remove
1,865,764 + Xcc-8004.1931.1 0.73 -1.5
1,865,764 + Xcc-8004.1931.1 0.73 +0.7
1,865,764 + Xcc-8004.1931.1 0.73 +2.2
1,865,764 + Xcc-8004.1931.1 0.73 +0.3
1,865,764 + Xcc-8004.1931.1 0.73 +2.0
1,865,764 + Xcc-8004.1931.1 0.73 +5.9
1,865,764 + Xcc-8004.1931.1 0.73 -2.7
1,865,765 - Xcc-8004.1931.1 0.73 -1.0
1,865,829 + +0.9
1,865,829 + -0.6
1,865,830 - +0.9
1,865,940 - +0.9
1,866,016 - -1.2
1,866,051 - -1.7
1,866,261 + Xcc-8004.1933.1 0.62 +3.7
1,866,261 + Xcc-8004.1933.1 0.62 -1.0
1,866,262 - Xcc-8004.1933.1 0.62 +0.8
1,866,854 - Xcc-8004.1935.1 0.10 +0.3
1,866,854 - Xcc-8004.1935.1 0.10 -1.5
1,866,854 - Xcc-8004.1935.1 0.10 -0.4
1,866,854 - Xcc-8004.1935.1 0.10 -0.1
1,867,026 - Xcc-8004.1935.1 0.36 +0.4
1,867,026 - Xcc-8004.1935.1 0.36 -0.4
1,867,039 + Xcc-8004.1935.1 0.38 -2.0
1,867,039 + Xcc-8004.1935.1 0.38 +1.6
1,867,042 + Xcc-8004.1935.1 0.39 -0.2
1,867,042 + Xcc-8004.1935.1 0.39 -1.7
1,867,042 + Xcc-8004.1935.1 0.39 +0.4
1,867,042 + Xcc-8004.1935.1 0.39 +0.4
1,867,043 - Xcc-8004.1935.1 0.39 -1.1
1,867,043 - Xcc-8004.1935.1 0.39 -1.8
1,867,043 - Xcc-8004.1935.1 0.39 +0.1
1,867,043 - Xcc-8004.1935.1 0.39 -1.2
1,867,043 - Xcc-8004.1935.1 0.39 -0.6
1,867,043 - Xcc-8004.1935.1 0.39 -0.9
1,867,043 - Xcc-8004.1935.1 0.39 -2.3
1,867,105 + Xcc-8004.1935.1 0.48 -1.6
1,867,105 + Xcc-8004.1935.1 0.48 -1.4
1,867,303 + Xcc-8004.1935.1 0.78 +2.7
1,867,303 + Xcc-8004.1935.1 0.78 +0.3
1,867,304 - Xcc-8004.1935.1 0.78 -0.5
1,867,304 - Xcc-8004.1935.1 0.78 +0.1

Or see this region's nucleotide sequence