Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1715.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1714.1 and Xcc-8004.1715.1 are separated by 237 nucleotidesXcc-8004.1715.1 and Xcc-8004.1716.1 are separated by 13 nucleotides Xcc-8004.1714.1: Xcc-8004.1714.1 - Twitching motility protein PilT, at 1,643,623 to 1,644,753 Xcc-8004.1714.1 Xcc-8004.1715.1: Xcc-8004.1715.1 - Transporter, at 1,644,991 to 1,645,707 Xcc-8004.1715.1 Xcc-8004.1716.1: Xcc-8004.1716.1 - FIG003003: hypothetical protein, at 1,645,721 to 1,646,620 Xcc-8004.1716.1 Position (kb) 1644 1645 1646Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1644.509 kb on - strand, within Xcc-8004.1714.1at 1644.509 kb on - strand, within Xcc-8004.1714.1at 1644.625 kb on + strand, within Xcc-8004.1714.1at 1644.625 kb on + strand, within Xcc-8004.1714.1at 1644.626 kb on - strand, within Xcc-8004.1714.1at 1644.806 kb on - strandat 1644.935 kb on + strandat 1644.935 kb on + strandat 1644.935 kb on + strandat 1644.935 kb on + strandat 1644.936 kb on - strandat 1644.936 kb on - strandat 1644.952 kb on - strandat 1644.959 kb on - strandat 1644.959 kb on - strandat 1645.117 kb on + strand, within Xcc-8004.1715.1at 1645.118 kb on - strand, within Xcc-8004.1715.1at 1645.118 kb on - strand, within Xcc-8004.1715.1at 1645.118 kb on - strand, within Xcc-8004.1715.1at 1645.118 kb on - strand, within Xcc-8004.1715.1at 1645.303 kb on + strand, within Xcc-8004.1715.1at 1645.304 kb on - strand, within Xcc-8004.1715.1at 1645.304 kb on - strand, within Xcc-8004.1715.1at 1645.409 kb on - strand, within Xcc-8004.1715.1at 1645.526 kb on - strand, within Xcc-8004.1715.1at 1645.630 kb on + strand, within Xcc-8004.1715.1at 1645.630 kb on + strand, within Xcc-8004.1715.1at 1645.693 kb on + strandat 1645.694 kb on - strandat 1645.695 kb on + strandat 1645.696 kb on - strandat 1645.696 kb on - strandat 1645.825 kb on - strand, within Xcc-8004.1716.1at 1645.825 kb on - strand, within Xcc-8004.1716.1at 1645.962 kb on + strand, within Xcc-8004.1716.1at 1645.963 kb on - strand, within Xcc-8004.1716.1at 1645.993 kb on - strand, within Xcc-8004.1716.1at 1646.386 kb on + strand, within Xcc-8004.1716.1at 1646.386 kb on + strand, within Xcc-8004.1716.1at 1646.387 kb on - strand, within Xcc-8004.1716.1at 1646.387 kb on - strand, within Xcc-8004.1716.1at 1646.481 kb on + strand, within Xcc-8004.1716.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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1,644,509 - Xcc-8004.1714.1 0.78 +1.0
1,644,509 - Xcc-8004.1714.1 0.78 -0.4
1,644,625 + Xcc-8004.1714.1 0.89 -3.7
1,644,625 + Xcc-8004.1714.1 0.89 -0.5
1,644,626 - Xcc-8004.1714.1 0.89 -1.5
1,644,806 - -1.5
1,644,935 + +1.1
1,644,935 + -0.5
1,644,935 + +0.0
1,644,935 + +0.9
1,644,936 - +0.3
1,644,936 - -0.5
1,644,952 - +0.5
1,644,959 - +1.3
1,644,959 - +1.4
1,645,117 + Xcc-8004.1715.1 0.18 +1.1
1,645,118 - Xcc-8004.1715.1 0.18 +0.4
1,645,118 - Xcc-8004.1715.1 0.18 +1.4
1,645,118 - Xcc-8004.1715.1 0.18 +1.7
1,645,118 - Xcc-8004.1715.1 0.18 +0.6
1,645,303 + Xcc-8004.1715.1 0.44 +0.2
1,645,304 - Xcc-8004.1715.1 0.44 +2.3
1,645,304 - Xcc-8004.1715.1 0.44 +2.7
1,645,409 - Xcc-8004.1715.1 0.58 +0.3
1,645,526 - Xcc-8004.1715.1 0.75 -3.1
1,645,630 + Xcc-8004.1715.1 0.89 +0.7
1,645,630 + Xcc-8004.1715.1 0.89 +0.3
1,645,693 + -1.2
1,645,694 - -2.5
1,645,695 + +0.4
1,645,696 - +1.5
1,645,696 - +0.7
1,645,825 - Xcc-8004.1716.1 0.12 +0.7
1,645,825 - Xcc-8004.1716.1 0.12 -1.3
1,645,962 + Xcc-8004.1716.1 0.27 -1.8
1,645,963 - Xcc-8004.1716.1 0.27 -0.2
1,645,993 - Xcc-8004.1716.1 0.30 -1.4
1,646,386 + Xcc-8004.1716.1 0.74 +0.4
1,646,386 + Xcc-8004.1716.1 0.74 +0.3
1,646,387 - Xcc-8004.1716.1 0.74 -0.7
1,646,387 - Xcc-8004.1716.1 0.74 -0.7
1,646,481 + Xcc-8004.1716.1 0.84 +0.2

Or see this region's nucleotide sequence