Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1644.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1643.1 and Xcc-8004.1644.1 overlap by 4 nucleotidesXcc-8004.1644.1 and Xcc-8004.1645.1 overlap by 13 nucleotides Xcc-8004.1643.1: Xcc-8004.1643.1 - Amino acid transporter, at 1,581,739 to 1,583,118 Xcc-8004.1643.1 Xcc-8004.1644.1: Xcc-8004.1644.1 - hypothetical protein, at 1,583,115 to 1,583,321 Xcc-8004.1644.1 Xcc-8004.1645.1: Xcc-8004.1645.1 - Transcriptional regulator ahyR/asaR family, at 1,583,309 to 1,584,073 Xcc-8004.1645.1 Position (kb) 1583 1584Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1582.517 kb on + strand, within Xcc-8004.1643.1at 1582.517 kb on + strand, within Xcc-8004.1643.1at 1582.518 kb on - strand, within Xcc-8004.1643.1at 1582.518 kb on - strand, within Xcc-8004.1643.1at 1582.754 kb on + strand, within Xcc-8004.1643.1at 1582.774 kb on + strand, within Xcc-8004.1643.1at 1582.774 kb on + strand, within Xcc-8004.1643.1at 1582.775 kb on - strand, within Xcc-8004.1643.1at 1582.775 kb on - strand, within Xcc-8004.1643.1at 1582.778 kb on + strand, within Xcc-8004.1643.1at 1582.778 kb on + strand, within Xcc-8004.1643.1at 1582.778 kb on + strand, within Xcc-8004.1643.1at 1582.779 kb on - strand, within Xcc-8004.1643.1at 1582.779 kb on - strand, within Xcc-8004.1643.1at 1582.841 kb on + strand, within Xcc-8004.1643.1at 1582.841 kb on + strand, within Xcc-8004.1643.1at 1582.841 kb on + strand, within Xcc-8004.1643.1at 1582.841 kb on + strand, within Xcc-8004.1643.1at 1582.841 kb on + strand, within Xcc-8004.1643.1at 1582.841 kb on + strand, within Xcc-8004.1643.1at 1582.842 kb on - strand, within Xcc-8004.1643.1at 1582.842 kb on - strand, within Xcc-8004.1643.1at 1582.842 kb on - strand, within Xcc-8004.1643.1at 1582.842 kb on - strand, within Xcc-8004.1643.1at 1582.842 kb on - strand, within Xcc-8004.1643.1at 1582.842 kb on - strand, within Xcc-8004.1643.1at 1582.842 kb on - strand, within Xcc-8004.1643.1at 1582.842 kb on - strand, within Xcc-8004.1643.1at 1582.842 kb on - strand, within Xcc-8004.1643.1at 1582.842 kb on - strand, within Xcc-8004.1643.1at 1582.842 kb on - strand, within Xcc-8004.1643.1at 1582.842 kb on - strand, within Xcc-8004.1643.1at 1582.842 kb on - strand, within Xcc-8004.1643.1at 1582.847 kb on + strand, within Xcc-8004.1643.1at 1582.847 kb on + strand, within Xcc-8004.1643.1at 1582.848 kb on - strand, within Xcc-8004.1643.1at 1582.848 kb on - strand, within Xcc-8004.1643.1at 1582.848 kb on - strand, within Xcc-8004.1643.1at 1582.889 kb on + strand, within Xcc-8004.1643.1at 1582.889 kb on + strand, within Xcc-8004.1643.1at 1582.890 kb on - strand, within Xcc-8004.1643.1at 1582.890 kb on - strand, within Xcc-8004.1643.1at 1582.890 kb on - strand, within Xcc-8004.1643.1at 1582.890 kb on - strand, within Xcc-8004.1643.1at 1582.890 kb on - strand, within Xcc-8004.1643.1at 1582.890 kb on - strand, within Xcc-8004.1643.1at 1582.894 kb on + strand, within Xcc-8004.1643.1at 1582.894 kb on + strand, within Xcc-8004.1643.1at 1582.895 kb on - strand, within Xcc-8004.1643.1at 1582.895 kb on - strand, within Xcc-8004.1643.1at 1582.931 kb on + strand, within Xcc-8004.1643.1at 1582.931 kb on + strand, within Xcc-8004.1643.1at 1582.932 kb on - strand, within Xcc-8004.1643.1at 1583.018 kb on + strandat 1583.018 kb on + strandat 1583.019 kb on - strandat 1583.019 kb on - strandat 1583.019 kb on - strandat 1583.019 kb on - strandat 1583.124 kb on + strandat 1583.125 kb on - strandat 1583.213 kb on + strand, within Xcc-8004.1644.1at 1583.213 kb on + strand, within Xcc-8004.1644.1at 1583.213 kb on + strand, within Xcc-8004.1644.1at 1583.213 kb on + strand, within Xcc-8004.1644.1at 1583.214 kb on - strand, within Xcc-8004.1644.1at 1583.214 kb on - strand, within Xcc-8004.1644.1at 1583.214 kb on - strand, within Xcc-8004.1644.1at 1583.214 kb on - strand, within Xcc-8004.1644.1at 1583.214 kb on - strand, within Xcc-8004.1644.1at 1583.250 kb on + strand, within Xcc-8004.1644.1at 1583.250 kb on + strand, within Xcc-8004.1644.1at 1583.251 kb on - strand, within Xcc-8004.1644.1at 1583.423 kb on + strand, within Xcc-8004.1645.1at 1583.423 kb on + strand, within Xcc-8004.1645.1at 1583.423 kb on + strand, within Xcc-8004.1645.1at 1583.423 kb on + strand, within Xcc-8004.1645.1at 1583.424 kb on - strand, within Xcc-8004.1645.1at 1583.424 kb on - strand, within Xcc-8004.1645.1at 1583.424 kb on - strand, within Xcc-8004.1645.1at 1583.424 kb on - strand, within Xcc-8004.1645.1at 1583.429 kb on + strand, within Xcc-8004.1645.1at 1583.430 kb on - strand, within Xcc-8004.1645.1at 1583.430 kb on - strand, within Xcc-8004.1645.1at 1583.430 kb on - strand, within Xcc-8004.1645.1at 1583.534 kb on + strand, within Xcc-8004.1645.1at 1583.534 kb on + strand, within Xcc-8004.1645.1at 1583.535 kb on - strand, within Xcc-8004.1645.1at 1583.535 kb on - strand, within Xcc-8004.1645.1at 1583.535 kb on - strand, within Xcc-8004.1645.1at 1583.537 kb on + strand, within Xcc-8004.1645.1at 1583.538 kb on - strand, within Xcc-8004.1645.1at 1583.589 kb on + strand, within Xcc-8004.1645.1at 1583.589 kb on + strand, within Xcc-8004.1645.1at 1583.590 kb on - strand, within Xcc-8004.1645.1at 1583.590 kb on - strand, within Xcc-8004.1645.1at 1583.590 kb on - strand, within Xcc-8004.1645.1at 1583.590 kb on - strand, within Xcc-8004.1645.1at 1583.590 kb on - strand, within Xcc-8004.1645.1at 1583.590 kb on - strand, within Xcc-8004.1645.1at 1583.597 kb on + strand, within Xcc-8004.1645.1at 1583.597 kb on + strand, within Xcc-8004.1645.1at 1583.630 kb on + strand, within Xcc-8004.1645.1at 1583.630 kb on + strand, within Xcc-8004.1645.1at 1583.630 kb on + strand, within Xcc-8004.1645.1at 1583.630 kb on + strand, within Xcc-8004.1645.1at 1583.630 kb on + strand, within Xcc-8004.1645.1at 1583.630 kb on + strand, within Xcc-8004.1645.1at 1583.631 kb on - strand, within Xcc-8004.1645.1at 1583.631 kb on - strand, within Xcc-8004.1645.1at 1583.631 kb on - strand, within Xcc-8004.1645.1at 1583.631 kb on - strand, within Xcc-8004.1645.1at 1583.631 kb on - strand, within Xcc-8004.1645.1at 1583.912 kb on + strand, within Xcc-8004.1645.1at 1583.912 kb on + strand, within Xcc-8004.1645.1at 1584.040 kb on - strandat 1584.053 kb on + strandat 1584.071 kb on + strandat 1584.071 kb on + strandat 1584.072 kb on - strandat 1584.072 kb on - strandat 1584.072 kb on - strandat 1584.072 kb on - strandat 1584.072 kb on - strandat 1584.072 kb on - strandat 1584.072 kb on - strandat 1584.244 kb on + strandat 1584.244 kb on + strandat 1584.244 kb on + strandat 1584.244 kb on + strandat 1584.244 kb on + strandat 1584.245 kb on - strandat 1584.245 kb on - strandat 1584.245 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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1,582,517 + Xcc-8004.1643.1 0.56 -2.5
1,582,517 + Xcc-8004.1643.1 0.56 -2.8
1,582,518 - Xcc-8004.1643.1 0.56 +1.0
1,582,518 - Xcc-8004.1643.1 0.56 +0.9
1,582,754 + Xcc-8004.1643.1 0.74 +0.4
1,582,774 + Xcc-8004.1643.1 0.75 -3.3
1,582,774 + Xcc-8004.1643.1 0.75 +1.6
1,582,775 - Xcc-8004.1643.1 0.75 +0.0
1,582,775 - Xcc-8004.1643.1 0.75 -0.9
1,582,778 + Xcc-8004.1643.1 0.75 -2.9
1,582,778 + Xcc-8004.1643.1 0.75 +0.2
1,582,778 + Xcc-8004.1643.1 0.75 +1.0
1,582,779 - Xcc-8004.1643.1 0.75 +0.5
1,582,779 - Xcc-8004.1643.1 0.75 -1.2
1,582,841 + Xcc-8004.1643.1 0.80 +3.9
1,582,841 + Xcc-8004.1643.1 0.80 -0.1
1,582,841 + Xcc-8004.1643.1 0.80 +3.1
1,582,841 + Xcc-8004.1643.1 0.80 +0.3
1,582,841 + Xcc-8004.1643.1 0.80 -0.3
1,582,841 + Xcc-8004.1643.1 0.80 +1.1
1,582,842 - Xcc-8004.1643.1 0.80 +0.8
1,582,842 - Xcc-8004.1643.1 0.80 +2.5
1,582,842 - Xcc-8004.1643.1 0.80 -1.5
1,582,842 - Xcc-8004.1643.1 0.80 -0.1
1,582,842 - Xcc-8004.1643.1 0.80 -2.7
1,582,842 - Xcc-8004.1643.1 0.80 +0.2
1,582,842 - Xcc-8004.1643.1 0.80 +1.5
1,582,842 - Xcc-8004.1643.1 0.80 +0.9
1,582,842 - Xcc-8004.1643.1 0.80 -1.4
1,582,842 - Xcc-8004.1643.1 0.80 -0.9
1,582,842 - Xcc-8004.1643.1 0.80 +2.8
1,582,842 - Xcc-8004.1643.1 0.80 -2.6
1,582,842 - Xcc-8004.1643.1 0.80 +0.9
1,582,847 + Xcc-8004.1643.1 0.80 +1.2
1,582,847 + Xcc-8004.1643.1 0.80 -1.3
1,582,848 - Xcc-8004.1643.1 0.80 -1.4
1,582,848 - Xcc-8004.1643.1 0.80 +1.4
1,582,848 - Xcc-8004.1643.1 0.80 +0.1
1,582,889 + Xcc-8004.1643.1 0.83 +0.4
1,582,889 + Xcc-8004.1643.1 0.83 +1.4
1,582,890 - Xcc-8004.1643.1 0.83 +1.2
1,582,890 - Xcc-8004.1643.1 0.83 +1.7
1,582,890 - Xcc-8004.1643.1 0.83 +0.2
1,582,890 - Xcc-8004.1643.1 0.83 -2.3
1,582,890 - Xcc-8004.1643.1 0.83 +0.6
1,582,890 - Xcc-8004.1643.1 0.83 +1.2
1,582,894 + Xcc-8004.1643.1 0.84 +0.9
1,582,894 + Xcc-8004.1643.1 0.84 -2.5
1,582,895 - Xcc-8004.1643.1 0.84 +0.5
1,582,895 - Xcc-8004.1643.1 0.84 -1.2
1,582,931 + Xcc-8004.1643.1 0.86 -0.8
1,582,931 + Xcc-8004.1643.1 0.86 +1.7
1,582,932 - Xcc-8004.1643.1 0.86 +0.2
1,583,018 + -0.5
1,583,018 + +1.2
1,583,019 - -0.9
1,583,019 - +1.6
1,583,019 - -0.0
1,583,019 - +0.9
1,583,124 + +1.3
1,583,125 - -1.6
1,583,213 + Xcc-8004.1644.1 0.47 +2.0
1,583,213 + Xcc-8004.1644.1 0.47 +0.5
1,583,213 + Xcc-8004.1644.1 0.47 +1.9
1,583,213 + Xcc-8004.1644.1 0.47 +1.6
1,583,214 - Xcc-8004.1644.1 0.48 -1.6
1,583,214 - Xcc-8004.1644.1 0.48 +1.5
1,583,214 - Xcc-8004.1644.1 0.48 +0.4
1,583,214 - Xcc-8004.1644.1 0.48 +0.1
1,583,214 - Xcc-8004.1644.1 0.48 +1.0
1,583,250 + Xcc-8004.1644.1 0.65 -0.5
1,583,250 + Xcc-8004.1644.1 0.65 +4.5
1,583,251 - Xcc-8004.1644.1 0.66 +1.5
1,583,423 + Xcc-8004.1645.1 0.15 -1.7
1,583,423 + Xcc-8004.1645.1 0.15 +0.5
1,583,423 + Xcc-8004.1645.1 0.15 -0.2
1,583,423 + Xcc-8004.1645.1 0.15 +0.6
1,583,424 - Xcc-8004.1645.1 0.15 +2.8
1,583,424 - Xcc-8004.1645.1 0.15 +0.5
1,583,424 - Xcc-8004.1645.1 0.15 +0.1
1,583,424 - Xcc-8004.1645.1 0.15 -2.1
1,583,429 + Xcc-8004.1645.1 0.16 +1.1
1,583,430 - Xcc-8004.1645.1 0.16 -0.5
1,583,430 - Xcc-8004.1645.1 0.16 +2.1
1,583,430 - Xcc-8004.1645.1 0.16 +2.1
1,583,534 + Xcc-8004.1645.1 0.29 -0.6
1,583,534 + Xcc-8004.1645.1 0.29 +0.2
1,583,535 - Xcc-8004.1645.1 0.30 +0.0
1,583,535 - Xcc-8004.1645.1 0.30 +0.7
1,583,535 - Xcc-8004.1645.1 0.30 -1.7
1,583,537 + Xcc-8004.1645.1 0.30 -2.0
1,583,538 - Xcc-8004.1645.1 0.30 +0.0
1,583,589 + Xcc-8004.1645.1 0.37 -0.5
1,583,589 + Xcc-8004.1645.1 0.37 +0.7
1,583,590 - Xcc-8004.1645.1 0.37 +0.6
1,583,590 - Xcc-8004.1645.1 0.37 +0.1
1,583,590 - Xcc-8004.1645.1 0.37 +0.3
1,583,590 - Xcc-8004.1645.1 0.37 -0.2
1,583,590 - Xcc-8004.1645.1 0.37 +0.3
1,583,590 - Xcc-8004.1645.1 0.37 +1.8
1,583,597 + Xcc-8004.1645.1 0.38 -0.2
1,583,597 + Xcc-8004.1645.1 0.38 +0.3
1,583,630 + Xcc-8004.1645.1 0.42 +0.2
1,583,630 + Xcc-8004.1645.1 0.42 -0.6
1,583,630 + Xcc-8004.1645.1 0.42 -1.3
1,583,630 + Xcc-8004.1645.1 0.42 +1.6
1,583,630 + Xcc-8004.1645.1 0.42 -0.3
1,583,630 + Xcc-8004.1645.1 0.42 +1.4
1,583,631 - Xcc-8004.1645.1 0.42 -1.9
1,583,631 - Xcc-8004.1645.1 0.42 +0.9
1,583,631 - Xcc-8004.1645.1 0.42 -0.3
1,583,631 - Xcc-8004.1645.1 0.42 +0.7
1,583,631 - Xcc-8004.1645.1 0.42 -0.8
1,583,912 + Xcc-8004.1645.1 0.79 -2.0
1,583,912 + Xcc-8004.1645.1 0.79 -2.5
1,584,040 - -2.4
1,584,053 + +1.5
1,584,071 + -1.1
1,584,071 + -0.2
1,584,072 - +1.0
1,584,072 - +1.9
1,584,072 - +0.9
1,584,072 - +0.6
1,584,072 - -1.1
1,584,072 - -2.9
1,584,072 - +0.8
1,584,244 + -2.7
1,584,244 + -2.6
1,584,244 + +0.2
1,584,244 + +1.0
1,584,244 + +0.5
1,584,245 - +0.4
1,584,245 - -2.0
1,584,245 - -0.5

Or see this region's nucleotide sequence