Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.163.1 and Xcc-8004.164.1 are separated by 186 nucleotides Xcc-8004.164.1 and Xcc-8004.165.1 are separated by 60 nucleotides Xcc-8004.165.1 and Xcc-8004.166.1 overlap by 4 nucleotides
Xcc-8004.163.1: Xcc-8004.163.1 - FIG01210576: hypothetical protein, at 155,229 to 159,110
Xcc-8004.163.1
Xcc-8004.164.1: Xcc-8004.164.1 - putative; ORF located using Glimmer/Genemark, at 159,297 to 159,506
Xcc-8004.164.1
Xcc-8004.165.1: Xcc-8004.165.1 - hypothetical protein, at 159,567 to 159,950
Xcc-8004.165.1
Xcc-8004.166.1: Xcc-8004.166.1 - FIG01209997: hypothetical protein, at 159,947 to 160,204
Xcc-8004.166.1
Position (kb) 159
160 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 158.322 kb on + strand, within Xcc-8004.163.1 at 158.322 kb on + strand, within Xcc-8004.163.1 at 158.322 kb on + strand, within Xcc-8004.163.1 at 158.322 kb on + strand, within Xcc-8004.163.1 at 158.322 kb on + strand, within Xcc-8004.163.1 at 158.323 kb on - strand, within Xcc-8004.163.1 at 158.427 kb on + strand, within Xcc-8004.163.1 at 158.483 kb on - strand, within Xcc-8004.163.1 at 158.483 kb on - strand, within Xcc-8004.163.1 at 158.532 kb on + strand, within Xcc-8004.163.1 at 158.532 kb on + strand, within Xcc-8004.163.1 at 158.533 kb on - strand, within Xcc-8004.163.1 at 158.764 kb on + strand at 158.962 kb on + strand at 158.962 kb on + strand at 158.962 kb on + strand at 158.962 kb on + strand at 158.963 kb on - strand at 158.963 kb on - strand at 159.057 kb on - strand at 159.152 kb on + strand at 159.152 kb on + strand at 159.152 kb on + strand at 159.153 kb on - strand at 159.153 kb on - strand at 159.153 kb on - strand at 159.153 kb on - strand at 159.153 kb on - strand at 159.153 kb on - strand at 159.253 kb on + strand at 159.253 kb on + strand at 159.254 kb on - strand at 159.378 kb on - strand, within Xcc-8004.164.1 at 159.421 kb on - strand, within Xcc-8004.164.1 at 159.421 kb on - strand, within Xcc-8004.164.1 at 159.459 kb on + strand, within Xcc-8004.164.1 at 159.459 kb on + strand, within Xcc-8004.164.1 at 159.460 kb on - strand, within Xcc-8004.164.1 at 159.460 kb on - strand, within Xcc-8004.164.1 at 159.473 kb on + strand, within Xcc-8004.164.1 at 159.473 kb on + strand, within Xcc-8004.164.1 at 159.474 kb on - strand, within Xcc-8004.164.1 at 159.474 kb on - strand, within Xcc-8004.164.1 at 159.505 kb on - strand at 159.543 kb on - strand at 159.543 kb on - strand at 159.554 kb on + strand at 159.555 kb on - strand at 159.586 kb on + strand at 159.654 kb on - strand, within Xcc-8004.165.1 at 159.668 kb on - strand, within Xcc-8004.165.1 at 159.935 kb on + strand at 159.936 kb on - strand at 159.981 kb on + strand, within Xcc-8004.166.1 at 159.981 kb on + strand, within Xcc-8004.166.1 at 159.981 kb on + strand, within Xcc-8004.166.1 at 160.009 kb on + strand, within Xcc-8004.166.1 at 160.043 kb on - strand, within Xcc-8004.166.1 at 160.050 kb on - strand, within Xcc-8004.166.1 at 160.100 kb on + strand, within Xcc-8004.166.1 at 160.101 kb on - strand, within Xcc-8004.166.1 at 160.101 kb on - strand, within Xcc-8004.166.1 at 160.101 kb on - strand, within Xcc-8004.166.1 at 160.167 kb on - strand, within Xcc-8004.166.1 at 160.167 kb on - strand, within Xcc-8004.166.1 at 160.169 kb on + strand, within Xcc-8004.166.1 at 160.170 kb on - strand, within Xcc-8004.166.1 at 160.255 kb on + strand at 160.280 kb on + strand at 160.306 kb on - strand at 160.306 kb on - strand at 160.481 kb on + strand at 160.487 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 158,322 + Xcc-8004.163.1 0.80 -0.5 158,322 + Xcc-8004.163.1 0.80 +1.3 158,322 + Xcc-8004.163.1 0.80 -2.3 158,322 + Xcc-8004.163.1 0.80 +1.4 158,322 + Xcc-8004.163.1 0.80 -0.3 158,323 - Xcc-8004.163.1 0.80 -0.8 158,427 + Xcc-8004.163.1 0.82 -1.7 158,483 - Xcc-8004.163.1 0.84 -0.7 158,483 - Xcc-8004.163.1 0.84 -0.8 158,532 + Xcc-8004.163.1 0.85 +1.3 158,532 + Xcc-8004.163.1 0.85 -1.2 158,533 - Xcc-8004.163.1 0.85 -3.1 158,764 + +2.0 158,962 + -1.0 158,962 + +2.6 158,962 + -2.0 158,962 + +0.5 158,963 - -2.4 158,963 - -1.3 159,057 - -1.5 159,152 + -2.6 159,152 + +0.2 159,152 + +0.8 159,153 - +1.1 159,153 - -0.1 159,153 - +1.6 159,153 - +1.0 159,153 - -0.8 159,153 - -0.2 159,253 + +0.6 159,253 + +0.2 159,254 - -0.5 159,378 - Xcc-8004.164.1 0.39 -0.2 159,421 - Xcc-8004.164.1 0.59 +1.4 159,421 - Xcc-8004.164.1 0.59 +0.4 159,459 + Xcc-8004.164.1 0.77 +0.8 159,459 + Xcc-8004.164.1 0.77 -0.2 159,460 - Xcc-8004.164.1 0.78 +0.5 159,460 - Xcc-8004.164.1 0.78 -1.3 159,473 + Xcc-8004.164.1 0.84 +1.8 159,473 + Xcc-8004.164.1 0.84 +1.0 159,474 - Xcc-8004.164.1 0.84 +1.0 159,474 - Xcc-8004.164.1 0.84 +1.2 159,505 - -0.5 159,543 - -2.5 159,543 - -1.0 159,554 + -0.7 159,555 - -1.0 159,586 + -0.3 159,654 - Xcc-8004.165.1 0.23 +1.4 159,668 - Xcc-8004.165.1 0.26 +2.5 159,935 + -0.9 159,936 - -1.1 159,981 + Xcc-8004.166.1 0.13 -1.0 159,981 + Xcc-8004.166.1 0.13 +0.5 159,981 + Xcc-8004.166.1 0.13 +0.9 160,009 + Xcc-8004.166.1 0.24 +0.2 160,043 - Xcc-8004.166.1 0.37 -0.3 160,050 - Xcc-8004.166.1 0.40 -0.3 160,100 + Xcc-8004.166.1 0.59 -0.2 160,101 - Xcc-8004.166.1 0.60 -1.0 160,101 - Xcc-8004.166.1 0.60 +0.9 160,101 - Xcc-8004.166.1 0.60 +0.3 160,167 - Xcc-8004.166.1 0.85 -2.0 160,167 - Xcc-8004.166.1 0.85 +0.6 160,169 + Xcc-8004.166.1 0.86 -0.1 160,170 - Xcc-8004.166.1 0.86 -0.4 160,255 + +1.2 160,280 + +0.3 160,306 - +1.8 160,306 - -0.9 160,481 + -0.1 160,487 + -2.0
Or see this region's nucleotide sequence