Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1638.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1636.1 and Xcc-8004.1637.1 are separated by 27 nucleotidesXcc-8004.1637.1 and Xcc-8004.1638.1 are separated by 145 nucleotidesXcc-8004.1638.1 and Xcc-8004.1639.1 are separated by 175 nucleotidesXcc-8004.1639.1 and Xcc-8004.1640.1 are separated by 262 nucleotides Xcc-8004.1636.1: Xcc-8004.1636.1 - hypothetical protein, at 1,576,592 to 1,577,011 Xcc-8004.1636.1 Xcc-8004.1637.1: Xcc-8004.1637.1 - FIG01210422: hypothetical protein, at 1,577,039 to 1,577,551 Xcc-8004.1637.1 Xcc-8004.1638.1: Xcc-8004.1638.1 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5), at 1,577,697 to 1,577,933 Xcc-8004.1638.1 Xcc-8004.1639.1: Xcc-8004.1639.1 - hypothetical protein, at 1,578,109 to 1,578,369 Xcc-8004.1639.1 Xcc-8004.1640.1: Xcc-8004.1640.1 - protein-glutamate methylesterase, at 1,578,632 to 1,579,663 Xcc-8004.1640.1 Position (kb) 1577 1578Strain fitness (log2 ratio) -3 -2 -1 0 1at 1576.805 kb on - strand, within Xcc-8004.1636.1at 1576.805 kb on - strand, within Xcc-8004.1636.1at 1576.805 kb on - strand, within Xcc-8004.1636.1at 1576.900 kb on + strand, within Xcc-8004.1636.1at 1576.901 kb on - strand, within Xcc-8004.1636.1at 1576.901 kb on - strand, within Xcc-8004.1636.1at 1577.082 kb on + strandat 1577.082 kb on + strandat 1577.115 kb on + strand, within Xcc-8004.1637.1at 1577.115 kb on + strand, within Xcc-8004.1637.1at 1577.116 kb on - strand, within Xcc-8004.1637.1at 1577.116 kb on - strand, within Xcc-8004.1637.1at 1577.116 kb on - strand, within Xcc-8004.1637.1at 1577.235 kb on + strand, within Xcc-8004.1637.1at 1577.235 kb on + strand, within Xcc-8004.1637.1at 1577.235 kb on + strand, within Xcc-8004.1637.1at 1577.236 kb on - strand, within Xcc-8004.1637.1at 1577.236 kb on - strand, within Xcc-8004.1637.1at 1577.236 kb on - strand, within Xcc-8004.1637.1at 1577.236 kb on - strand, within Xcc-8004.1637.1at 1577.280 kb on + strand, within Xcc-8004.1637.1at 1577.281 kb on - strand, within Xcc-8004.1637.1at 1577.299 kb on - strand, within Xcc-8004.1637.1at 1577.328 kb on + strand, within Xcc-8004.1637.1at 1577.329 kb on - strand, within Xcc-8004.1637.1at 1577.443 kb on + strand, within Xcc-8004.1637.1at 1577.444 kb on - strand, within Xcc-8004.1637.1at 1577.444 kb on - strand, within Xcc-8004.1637.1at 1577.596 kb on + strandat 1577.597 kb on - strandat 1577.597 kb on - strandat 1577.648 kb on + strandat 1577.649 kb on - strandat 1577.654 kb on + strandat 1577.654 kb on + strandat 1577.659 kb on + strandat 1577.691 kb on - strandat 1578.080 kb on + strandat 1578.080 kb on + strandat 1578.081 kb on - strandat 1578.081 kb on - strandat 1578.081 kb on - strandat 1578.159 kb on - strand, within Xcc-8004.1639.1at 1578.159 kb on - strand, within Xcc-8004.1639.1at 1578.172 kb on + strand, within Xcc-8004.1639.1at 1578.172 kb on + strand, within Xcc-8004.1639.1at 1578.173 kb on - strand, within Xcc-8004.1639.1at 1578.173 kb on - strand, within Xcc-8004.1639.1at 1578.173 kb on - strand, within Xcc-8004.1639.1at 1578.181 kb on + strand, within Xcc-8004.1639.1at 1578.182 kb on - strand, within Xcc-8004.1639.1at 1578.214 kb on + strand, within Xcc-8004.1639.1at 1578.215 kb on - strand, within Xcc-8004.1639.1at 1578.215 kb on - strand, within Xcc-8004.1639.1at 1578.403 kb on + strandat 1578.403 kb on + strandat 1578.403 kb on + strandat 1578.403 kb on + strandat 1578.562 kb on + strandat 1578.562 kb on + strandat 1578.563 kb on - strandat 1578.572 kb on + strandat 1578.572 kb on + strandat 1578.572 kb on + strandat 1578.572 kb on + strandat 1578.573 kb on - strandat 1578.573 kb on - strandat 1578.573 kb on - strandat 1578.878 kb on + strand, within Xcc-8004.1640.1at 1578.879 kb on - strand, within Xcc-8004.1640.1at 1578.879 kb on - strand, within Xcc-8004.1640.1at 1578.879 kb on - strand, within Xcc-8004.1640.1at 1578.879 kb on - strand, within Xcc-8004.1640.1at 1578.879 kb on - strand, within Xcc-8004.1640.1at 1578.879 kb on - strand, within Xcc-8004.1640.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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1,576,805 - Xcc-8004.1636.1 0.51 +0.9
1,576,805 - Xcc-8004.1636.1 0.51 +0.6
1,576,805 - Xcc-8004.1636.1 0.51 -0.3
1,576,900 + Xcc-8004.1636.1 0.73 +0.6
1,576,901 - Xcc-8004.1636.1 0.74 -0.4
1,576,901 - Xcc-8004.1636.1 0.74 -0.3
1,577,082 + +0.9
1,577,082 + -2.9
1,577,115 + Xcc-8004.1637.1 0.15 +1.6
1,577,115 + Xcc-8004.1637.1 0.15 -2.5
1,577,116 - Xcc-8004.1637.1 0.15 -0.1
1,577,116 - Xcc-8004.1637.1 0.15 -2.3
1,577,116 - Xcc-8004.1637.1 0.15 -1.3
1,577,235 + Xcc-8004.1637.1 0.38 +1.3
1,577,235 + Xcc-8004.1637.1 0.38 -2.3
1,577,235 + Xcc-8004.1637.1 0.38 -0.3
1,577,236 - Xcc-8004.1637.1 0.38 -0.0
1,577,236 - Xcc-8004.1637.1 0.38 -0.6
1,577,236 - Xcc-8004.1637.1 0.38 -1.7
1,577,236 - Xcc-8004.1637.1 0.38 -1.6
1,577,280 + Xcc-8004.1637.1 0.47 -3.7
1,577,281 - Xcc-8004.1637.1 0.47 -1.3
1,577,299 - Xcc-8004.1637.1 0.51 -2.4
1,577,328 + Xcc-8004.1637.1 0.56 +0.3
1,577,329 - Xcc-8004.1637.1 0.57 -0.5
1,577,443 + Xcc-8004.1637.1 0.79 -0.1
1,577,444 - Xcc-8004.1637.1 0.79 +0.4
1,577,444 - Xcc-8004.1637.1 0.79 -2.4
1,577,596 + -1.1
1,577,597 - -1.9
1,577,597 - -0.4
1,577,648 + -1.5
1,577,649 - +1.2
1,577,654 + -3.2
1,577,654 + +0.8
1,577,659 + -1.6
1,577,691 - -2.2
1,578,080 + -0.6
1,578,080 + -1.2
1,578,081 - +0.2
1,578,081 - -1.6
1,578,081 - -2.9
1,578,159 - Xcc-8004.1639.1 0.19 -0.4
1,578,159 - Xcc-8004.1639.1 0.19 +0.8
1,578,172 + Xcc-8004.1639.1 0.24 +1.1
1,578,172 + Xcc-8004.1639.1 0.24 +0.2
1,578,173 - Xcc-8004.1639.1 0.25 -3.0
1,578,173 - Xcc-8004.1639.1 0.25 +0.4
1,578,173 - Xcc-8004.1639.1 0.25 -0.8
1,578,181 + Xcc-8004.1639.1 0.28 +0.1
1,578,182 - Xcc-8004.1639.1 0.28 +0.5
1,578,214 + Xcc-8004.1639.1 0.40 +1.5
1,578,215 - Xcc-8004.1639.1 0.41 -0.3
1,578,215 - Xcc-8004.1639.1 0.41 -1.1
1,578,403 + -1.3
1,578,403 + -1.3
1,578,403 + -2.2
1,578,403 + -0.9
1,578,562 + +0.8
1,578,562 + -2.5
1,578,563 - +0.7
1,578,572 + +0.9
1,578,572 + +0.2
1,578,572 + +0.5
1,578,572 + -1.9
1,578,573 - +1.4
1,578,573 - -3.3
1,578,573 - +1.5
1,578,878 + Xcc-8004.1640.1 0.24 +0.2
1,578,879 - Xcc-8004.1640.1 0.24 +0.1
1,578,879 - Xcc-8004.1640.1 0.24 +0.8
1,578,879 - Xcc-8004.1640.1 0.24 -1.7
1,578,879 - Xcc-8004.1640.1 0.24 -1.7
1,578,879 - Xcc-8004.1640.1 0.24 +0.2
1,578,879 - Xcc-8004.1640.1 0.24 +0.0

Or see this region's nucleotide sequence