Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1565.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1563.1 and Xcc-8004.1564.1 overlap by 4 nucleotidesXcc-8004.1564.1 and Xcc-8004.1565.1 are separated by 351 nucleotidesXcc-8004.1565.1 and Xcc-8004.1566.1 are separated by 3 nucleotidesXcc-8004.1566.1 and Xcc-8004.1567.1 are separated by 207 nucleotides Xcc-8004.1563.1: Xcc-8004.1563.1 - Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8), at 1,502,206 to 1,503,030 Xcc-8004.1563.1 Xcc-8004.1564.1: Xcc-8004.1564.1 - Protein of unknown function UPF0060, at 1,503,027 to 1,503,362 Xcc-8004.1564.1 Xcc-8004.1565.1: Xcc-8004.1565.1 - Putative stomatin/prohibitin-family membrane protease subunit YbbK, at 1,503,714 to 1,504,679 Xcc-8004.1565.1 Xcc-8004.1566.1: Xcc-8004.1566.1 - Putative activity regulator of membrane protease YbbK, at 1,504,683 to 1,505,117 Xcc-8004.1566.1 Xcc-8004.1567.1: Xcc-8004.1567.1 - Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10), at 1,505,325 to 1,506,434 Xcc-8004.1567.1 Position (kb) 1503 1504 1505Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1502.932 kb on + strand, within Xcc-8004.1563.1at 1502.932 kb on + strand, within Xcc-8004.1563.1at 1502.932 kb on + strand, within Xcc-8004.1563.1at 1502.932 kb on + strand, within Xcc-8004.1563.1at 1502.932 kb on + strand, within Xcc-8004.1563.1at 1502.932 kb on + strand, within Xcc-8004.1563.1at 1502.933 kb on - strand, within Xcc-8004.1563.1at 1502.933 kb on - strand, within Xcc-8004.1563.1at 1502.933 kb on - strand, within Xcc-8004.1563.1at 1503.093 kb on + strand, within Xcc-8004.1564.1at 1503.102 kb on + strand, within Xcc-8004.1564.1at 1503.103 kb on - strand, within Xcc-8004.1564.1at 1503.103 kb on - strand, within Xcc-8004.1564.1at 1503.214 kb on - strand, within Xcc-8004.1564.1at 1503.222 kb on + strand, within Xcc-8004.1564.1at 1503.223 kb on - strand, within Xcc-8004.1564.1at 1503.223 kb on - strand, within Xcc-8004.1564.1at 1503.234 kb on + strand, within Xcc-8004.1564.1at 1503.234 kb on + strand, within Xcc-8004.1564.1at 1503.235 kb on - strand, within Xcc-8004.1564.1at 1503.235 kb on - strand, within Xcc-8004.1564.1at 1503.428 kb on - strandat 1503.445 kb on + strandat 1503.445 kb on + strandat 1503.445 kb on + strandat 1503.446 kb on - strandat 1503.446 kb on - strandat 1503.446 kb on - strandat 1503.558 kb on + strandat 1503.582 kb on - strandat 1503.618 kb on + strandat 1503.618 kb on + strandat 1503.618 kb on + strandat 1503.618 kb on + strandat 1503.618 kb on + strandat 1503.619 kb on - strandat 1503.619 kb on - strandat 1503.619 kb on - strandat 1503.672 kb on - strandat 1503.673 kb on + strandat 1503.673 kb on + strandat 1503.673 kb on + strandat 1503.674 kb on - strandat 1503.674 kb on - strandat 1503.674 kb on - strandat 1503.674 kb on - strandat 1503.831 kb on + strand, within Xcc-8004.1565.1at 1503.832 kb on - strand, within Xcc-8004.1565.1at 1503.879 kb on + strand, within Xcc-8004.1565.1at 1503.879 kb on + strand, within Xcc-8004.1565.1at 1504.068 kb on - strand, within Xcc-8004.1565.1at 1504.480 kb on - strand, within Xcc-8004.1565.1at 1504.480 kb on - strand, within Xcc-8004.1565.1at 1504.480 kb on - strand, within Xcc-8004.1565.1at 1504.480 kb on - strand, within Xcc-8004.1565.1at 1504.480 kb on - strand, within Xcc-8004.1565.1at 1504.497 kb on + strand, within Xcc-8004.1565.1at 1504.658 kb on - strandat 1504.658 kb on - strandat 1504.658 kb on - strandat 1504.881 kb on + strand, within Xcc-8004.1566.1at 1504.881 kb on + strand, within Xcc-8004.1566.1at 1504.882 kb on - strand, within Xcc-8004.1566.1at 1505.155 kb on + strandat 1505.526 kb on + strand, within Xcc-8004.1567.1at 1505.577 kb on + strand, within Xcc-8004.1567.1at 1505.577 kb on + strand, within Xcc-8004.1567.1at 1505.578 kb on - strand, within Xcc-8004.1567.1at 1505.578 kb on - strand, within Xcc-8004.1567.1at 1505.578 kb on - strand, within Xcc-8004.1567.1at 1505.578 kb on - strand, within Xcc-8004.1567.1at 1505.578 kb on - strand, within Xcc-8004.1567.1at 1505.628 kb on + strand, within Xcc-8004.1567.1at 1505.628 kb on + strand, within Xcc-8004.1567.1at 1505.629 kb on - strand, within Xcc-8004.1567.1at 1505.629 kb on - strand, within Xcc-8004.1567.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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1,502,932 + Xcc-8004.1563.1 0.88 -3.8
1,502,932 + Xcc-8004.1563.1 0.88 -2.3
1,502,932 + Xcc-8004.1563.1 0.88 +0.9
1,502,932 + Xcc-8004.1563.1 0.88 +1.2
1,502,932 + Xcc-8004.1563.1 0.88 +0.3
1,502,932 + Xcc-8004.1563.1 0.88 +0.5
1,502,933 - Xcc-8004.1563.1 0.88 +0.2
1,502,933 - Xcc-8004.1563.1 0.88 -0.6
1,502,933 - Xcc-8004.1563.1 0.88 -3.3
1,503,093 + Xcc-8004.1564.1 0.20 -2.1
1,503,102 + Xcc-8004.1564.1 0.22 +0.5
1,503,103 - Xcc-8004.1564.1 0.23 -0.0
1,503,103 - Xcc-8004.1564.1 0.23 -0.9
1,503,214 - Xcc-8004.1564.1 0.56 +0.4
1,503,222 + Xcc-8004.1564.1 0.58 -3.6
1,503,223 - Xcc-8004.1564.1 0.58 -1.1
1,503,223 - Xcc-8004.1564.1 0.58 +0.4
1,503,234 + Xcc-8004.1564.1 0.62 +0.7
1,503,234 + Xcc-8004.1564.1 0.62 -0.7
1,503,235 - Xcc-8004.1564.1 0.62 -3.0
1,503,235 - Xcc-8004.1564.1 0.62 -1.5
1,503,428 - +1.4
1,503,445 + +0.8
1,503,445 + +1.6
1,503,445 + +0.8
1,503,446 - +1.6
1,503,446 - -2.9
1,503,446 - -0.8
1,503,558 + -0.2
1,503,582 - -0.6
1,503,618 + -0.7
1,503,618 + +0.3
1,503,618 + +0.8
1,503,618 + -2.9
1,503,618 + +0.4
1,503,619 - -1.3
1,503,619 - -1.1
1,503,619 - -0.1
1,503,672 - -2.1
1,503,673 + -0.3
1,503,673 + +1.2
1,503,673 + -0.2
1,503,674 - -1.9
1,503,674 - -1.4
1,503,674 - -0.3
1,503,674 - -4.3
1,503,831 + Xcc-8004.1565.1 0.12 -0.1
1,503,832 - Xcc-8004.1565.1 0.12 -0.6
1,503,879 + Xcc-8004.1565.1 0.17 -1.6
1,503,879 + Xcc-8004.1565.1 0.17 -0.7
1,504,068 - Xcc-8004.1565.1 0.37 +0.2
1,504,480 - Xcc-8004.1565.1 0.79 -0.2
1,504,480 - Xcc-8004.1565.1 0.79 -1.3
1,504,480 - Xcc-8004.1565.1 0.79 -3.6
1,504,480 - Xcc-8004.1565.1 0.79 -2.2
1,504,480 - Xcc-8004.1565.1 0.79 +0.8
1,504,497 + Xcc-8004.1565.1 0.81 +3.0
1,504,658 - -0.0
1,504,658 - +2.2
1,504,658 - +1.0
1,504,881 + Xcc-8004.1566.1 0.46 +0.7
1,504,881 + Xcc-8004.1566.1 0.46 +1.0
1,504,882 - Xcc-8004.1566.1 0.46 +1.7
1,505,155 + -2.0
1,505,526 + Xcc-8004.1567.1 0.18 -3.0
1,505,577 + Xcc-8004.1567.1 0.23 -1.7
1,505,577 + Xcc-8004.1567.1 0.23 -2.3
1,505,578 - Xcc-8004.1567.1 0.23 -0.1
1,505,578 - Xcc-8004.1567.1 0.23 -0.9
1,505,578 - Xcc-8004.1567.1 0.23 -0.7
1,505,578 - Xcc-8004.1567.1 0.23 -1.0
1,505,578 - Xcc-8004.1567.1 0.23 +0.2
1,505,628 + Xcc-8004.1567.1 0.27 +0.1
1,505,628 + Xcc-8004.1567.1 0.27 -0.6
1,505,629 - Xcc-8004.1567.1 0.27 -2.1
1,505,629 - Xcc-8004.1567.1 0.27 +2.0

Or see this region's nucleotide sequence