Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1399.1 and Xcc-8004.1400.1 overlap by 4 nucleotides Xcc-8004.1400.1 and Xcc-8004.1401.1 are separated by 19 nucleotides Xcc-8004.1401.1 and Xcc-8004.1402.1 overlap by 79 nucleotides
Xcc-8004.1399.1: Xcc-8004.1399.1 - Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73), at 1,327,428 to 1,327,997
Xcc-8004.1399.1
Xcc-8004.1400.1: Xcc-8004.1400.1 - Cobalamin synthase (EC 2.7.8.26), at 1,327,994 to 1,328,728
Xcc-8004.1400.1
Xcc-8004.1401.1: Xcc-8004.1401.1 - hypothetical protein, at 1,328,748 to 1,329,728
Xcc-8004.1401.1
Xcc-8004.1402.1: Xcc-8004.1402.1 - Vibrioferrin decarboxylase protein PvsE, at 1,329,650 to 1,330,933
Xcc-8004.1402.1
Position (kb) 1328
1329
1330 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1327.830 kb on + strand, within Xcc-8004.1399.1 at 1327.830 kb on + strand, within Xcc-8004.1399.1 at 1327.830 kb on + strand, within Xcc-8004.1399.1 at 1327.830 kb on + strand, within Xcc-8004.1399.1 at 1327.830 kb on + strand, within Xcc-8004.1399.1 at 1327.830 kb on + strand, within Xcc-8004.1399.1 at 1327.831 kb on - strand, within Xcc-8004.1399.1 at 1327.831 kb on - strand, within Xcc-8004.1399.1 at 1327.831 kb on - strand, within Xcc-8004.1399.1 at 1328.462 kb on + strand, within Xcc-8004.1400.1 at 1328.462 kb on + strand, within Xcc-8004.1400.1 at 1328.462 kb on + strand, within Xcc-8004.1400.1 at 1328.717 kb on + strand at 1328.717 kb on + strand at 1328.717 kb on + strand at 1328.717 kb on + strand at 1328.718 kb on - strand at 1328.727 kb on - strand at 1329.094 kb on + strand, within Xcc-8004.1401.1 at 1329.094 kb on + strand, within Xcc-8004.1401.1 at 1329.111 kb on + strand, within Xcc-8004.1401.1 at 1329.111 kb on + strand, within Xcc-8004.1401.1 at 1329.558 kb on + strand, within Xcc-8004.1401.1 at 1329.558 kb on + strand, within Xcc-8004.1401.1 at 1329.559 kb on - strand, within Xcc-8004.1401.1 at 1329.559 kb on - strand, within Xcc-8004.1401.1 at 1329.559 kb on - strand, within Xcc-8004.1401.1 at 1329.645 kb on + strand at 1329.645 kb on + strand at 1329.646 kb on - strand at 1329.646 kb on - strand at 1329.646 kb on - strand at 1329.652 kb on - strand at 1329.652 kb on - strand at 1329.790 kb on + strand, within Xcc-8004.1402.1 at 1329.791 kb on - strand, within Xcc-8004.1402.1 at 1329.791 kb on - strand, within Xcc-8004.1402.1 at 1329.801 kb on + strand, within Xcc-8004.1402.1 at 1329.802 kb on - strand, within Xcc-8004.1402.1 at 1329.872 kb on + strand, within Xcc-8004.1402.1 at 1329.872 kb on + strand, within Xcc-8004.1402.1 at 1329.872 kb on + strand, within Xcc-8004.1402.1 at 1329.872 kb on + strand, within Xcc-8004.1402.1 at 1329.872 kb on + strand, within Xcc-8004.1402.1 at 1329.873 kb on - strand, within Xcc-8004.1402.1 at 1329.873 kb on - strand, within Xcc-8004.1402.1 at 1329.873 kb on - strand, within Xcc-8004.1402.1 at 1329.873 kb on - strand, within Xcc-8004.1402.1 at 1329.873 kb on - strand, within Xcc-8004.1402.1 at 1330.068 kb on + strand, within Xcc-8004.1402.1 at 1330.068 kb on + strand, within Xcc-8004.1402.1 at 1330.092 kb on + strand, within Xcc-8004.1402.1 at 1330.093 kb on - strand, within Xcc-8004.1402.1 at 1330.200 kb on + strand, within Xcc-8004.1402.1 at 1330.201 kb on - strand, within Xcc-8004.1402.1 at 1330.201 kb on - strand, within Xcc-8004.1402.1 at 1330.284 kb on + strand, within Xcc-8004.1402.1 at 1330.285 kb on - strand, within Xcc-8004.1402.1 at 1330.285 kb on - strand, within Xcc-8004.1402.1 at 1330.380 kb on - strand, within Xcc-8004.1402.1 at 1330.723 kb on - strand, within Xcc-8004.1402.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 1,327,830 + Xcc-8004.1399.1 0.71 +0.6 1,327,830 + Xcc-8004.1399.1 0.71 +0.7 1,327,830 + Xcc-8004.1399.1 0.71 -0.5 1,327,830 + Xcc-8004.1399.1 0.71 +0.2 1,327,830 + Xcc-8004.1399.1 0.71 +1.5 1,327,830 + Xcc-8004.1399.1 0.71 -1.1 1,327,831 - Xcc-8004.1399.1 0.71 +0.9 1,327,831 - Xcc-8004.1399.1 0.71 +0.4 1,327,831 - Xcc-8004.1399.1 0.71 +0.0 1,328,462 + Xcc-8004.1400.1 0.64 -1.1 1,328,462 + Xcc-8004.1400.1 0.64 +0.9 1,328,462 + Xcc-8004.1400.1 0.64 -2.3 1,328,717 + -1.9 1,328,717 + +1.1 1,328,717 + +0.7 1,328,717 + -0.2 1,328,718 - -0.8 1,328,727 - -0.4 1,329,094 + Xcc-8004.1401.1 0.35 -1.1 1,329,094 + Xcc-8004.1401.1 0.35 +0.1 1,329,111 + Xcc-8004.1401.1 0.37 -0.3 1,329,111 + Xcc-8004.1401.1 0.37 +0.5 1,329,558 + Xcc-8004.1401.1 0.83 +1.0 1,329,558 + Xcc-8004.1401.1 0.83 -0.5 1,329,559 - Xcc-8004.1401.1 0.83 -2.2 1,329,559 - Xcc-8004.1401.1 0.83 -2.2 1,329,559 - Xcc-8004.1401.1 0.83 +0.2 1,329,645 + -0.8 1,329,645 + -0.8 1,329,646 - +0.3 1,329,646 - -1.3 1,329,646 - +0.7 1,329,652 - -1.4 1,329,652 - +1.0 1,329,790 + Xcc-8004.1402.1 0.11 -2.3 1,329,791 - Xcc-8004.1402.1 0.11 -0.3 1,329,791 - Xcc-8004.1402.1 0.11 +2.0 1,329,801 + Xcc-8004.1402.1 0.12 -0.2 1,329,802 - Xcc-8004.1402.1 0.12 -3.0 1,329,872 + Xcc-8004.1402.1 0.17 +2.0 1,329,872 + Xcc-8004.1402.1 0.17 +2.5 1,329,872 + Xcc-8004.1402.1 0.17 -0.4 1,329,872 + Xcc-8004.1402.1 0.17 +0.4 1,329,872 + Xcc-8004.1402.1 0.17 -1.7 1,329,873 - Xcc-8004.1402.1 0.17 +1.4 1,329,873 - Xcc-8004.1402.1 0.17 -0.6 1,329,873 - Xcc-8004.1402.1 0.17 -3.1 1,329,873 - Xcc-8004.1402.1 0.17 -1.5 1,329,873 - Xcc-8004.1402.1 0.17 +0.9 1,330,068 + Xcc-8004.1402.1 0.33 -1.1 1,330,068 + Xcc-8004.1402.1 0.33 -0.1 1,330,092 + Xcc-8004.1402.1 0.34 -1.3 1,330,093 - Xcc-8004.1402.1 0.35 +0.4 1,330,200 + Xcc-8004.1402.1 0.43 +1.2 1,330,201 - Xcc-8004.1402.1 0.43 +0.2 1,330,201 - Xcc-8004.1402.1 0.43 +0.5 1,330,284 + Xcc-8004.1402.1 0.49 -0.2 1,330,285 - Xcc-8004.1402.1 0.49 +1.1 1,330,285 - Xcc-8004.1402.1 0.49 +1.0 1,330,380 - Xcc-8004.1402.1 0.57 -1.2 1,330,723 - Xcc-8004.1402.1 0.84 +2.2
Or see this region's nucleotide sequence