Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1308.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1306.1 and Xcc-8004.1307.1 overlap by 4 nucleotidesXcc-8004.1307.1 and Xcc-8004.1308.1 overlap by 4 nucleotidesXcc-8004.1308.1 and Xcc-8004.1309.1 are separated by 140 nucleotidesXcc-8004.1309.1 and Xcc-8004.1311.1 overlap by 14 nucleotides Xcc-8004.1306.1: Xcc-8004.1306.1 - hypothetical protein, at 1,245,324 to 1,245,854 Xcc-8004.1306.1 Xcc-8004.1307.1: Xcc-8004.1307.1 - FIG01212836: hypothetical protein, at 1,245,851 to 1,246,510 Xcc-8004.1307.1 Xcc-8004.1308.1: Xcc-8004.1308.1 - FIG01211990: hypothetical protein, at 1,246,507 to 1,246,767 Xcc-8004.1308.1 Xcc-8004.1309.1: Xcc-8004.1309.1 - Mobile element protein, at 1,246,908 to 1,247,693 Xcc-8004.1309.1 Xcc-8004.1311.1: Xcc-8004.1311.1 - Mobile element protein, at 1,247,680 to 1,248,447 Xcc-8004.1311.1 Position (kb) 1246 1247Strain fitness (log2 ratio) -2 -1 0 1 2at 1245.544 kb on + strand, within Xcc-8004.1306.1at 1245.545 kb on - strand, within Xcc-8004.1306.1at 1245.557 kb on + strand, within Xcc-8004.1306.1at 1245.558 kb on - strand, within Xcc-8004.1306.1at 1245.763 kb on + strand, within Xcc-8004.1306.1at 1245.763 kb on + strand, within Xcc-8004.1306.1at 1245.801 kb on - strand, within Xcc-8004.1306.1at 1245.920 kb on - strand, within Xcc-8004.1307.1at 1246.176 kb on + strand, within Xcc-8004.1307.1at 1246.177 kb on - strand, within Xcc-8004.1307.1at 1246.177 kb on - strand, within Xcc-8004.1307.1at 1246.187 kb on - strand, within Xcc-8004.1307.1at 1246.191 kb on - strand, within Xcc-8004.1307.1at 1246.191 kb on - strand, within Xcc-8004.1307.1at 1246.206 kb on - strand, within Xcc-8004.1307.1at 1246.235 kb on + strand, within Xcc-8004.1307.1at 1246.263 kb on + strand, within Xcc-8004.1307.1at 1246.263 kb on + strand, within Xcc-8004.1307.1at 1246.263 kb on + strand, within Xcc-8004.1307.1at 1246.267 kb on + strand, within Xcc-8004.1307.1at 1246.272 kb on + strand, within Xcc-8004.1307.1at 1246.273 kb on - strand, within Xcc-8004.1307.1at 1246.292 kb on - strand, within Xcc-8004.1307.1at 1246.332 kb on - strand, within Xcc-8004.1307.1at 1246.348 kb on + strand, within Xcc-8004.1307.1at 1246.370 kb on + strand, within Xcc-8004.1307.1at 1246.528 kb on + strandat 1246.596 kb on + strand, within Xcc-8004.1308.1at 1246.597 kb on - strand, within Xcc-8004.1308.1at 1246.613 kb on - strand, within Xcc-8004.1308.1at 1246.613 kb on - strand, within Xcc-8004.1308.1at 1246.628 kb on - strand, within Xcc-8004.1308.1at 1246.636 kb on - strand, within Xcc-8004.1308.1at 1247.692 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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1,245,544 + Xcc-8004.1306.1 0.41 +1.0
1,245,545 - Xcc-8004.1306.1 0.42 -0.3
1,245,557 + Xcc-8004.1306.1 0.44 -0.5
1,245,558 - Xcc-8004.1306.1 0.44 +0.4
1,245,763 + Xcc-8004.1306.1 0.83 -1.4
1,245,763 + Xcc-8004.1306.1 0.83 +0.7
1,245,801 - Xcc-8004.1306.1 0.90 +0.6
1,245,920 - Xcc-8004.1307.1 0.10 -0.6
1,246,176 + Xcc-8004.1307.1 0.49 -0.5
1,246,177 - Xcc-8004.1307.1 0.49 -0.1
1,246,177 - Xcc-8004.1307.1 0.49 +0.1
1,246,187 - Xcc-8004.1307.1 0.51 +1.6
1,246,191 - Xcc-8004.1307.1 0.52 -0.5
1,246,191 - Xcc-8004.1307.1 0.52 -0.3
1,246,206 - Xcc-8004.1307.1 0.54 +1.0
1,246,235 + Xcc-8004.1307.1 0.58 +2.2
1,246,263 + Xcc-8004.1307.1 0.62 +0.3
1,246,263 + Xcc-8004.1307.1 0.62 +0.8
1,246,263 + Xcc-8004.1307.1 0.62 -2.5
1,246,267 + Xcc-8004.1307.1 0.63 -1.5
1,246,272 + Xcc-8004.1307.1 0.64 +0.4
1,246,273 - Xcc-8004.1307.1 0.64 +0.3
1,246,292 - Xcc-8004.1307.1 0.67 -2.1
1,246,332 - Xcc-8004.1307.1 0.73 -1.5
1,246,348 + Xcc-8004.1307.1 0.75 -1.3
1,246,370 + Xcc-8004.1307.1 0.79 +0.5
1,246,528 + +0.1
1,246,596 + Xcc-8004.1308.1 0.34 +1.7
1,246,597 - Xcc-8004.1308.1 0.34 +0.2
1,246,613 - Xcc-8004.1308.1 0.41 +1.5
1,246,613 - Xcc-8004.1308.1 0.41 +1.4
1,246,628 - Xcc-8004.1308.1 0.46 -0.6
1,246,636 - Xcc-8004.1308.1 0.49 +0.7
1,247,692 - -1.0

Or see this region's nucleotide sequence