Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1069.1 and Xcc-8004.1071.1 are separated by 48 nucleotides Xcc-8004.1071.1 and Xcc-8004.1072.1 are separated by 629 nucleotides
Xcc-8004.1069.1: Xcc-8004.1069.1 - Transcriptional regulator, at 1,024,772 to 1,025,665
Xcc-8004.1069.1
Xcc-8004.1071.1: Xcc-8004.1071.1 - hypothetical protein, at 1,025,714 to 1,028,602
Xcc-8004.1071.1
Xcc-8004.1072.1: Xcc-8004.1072.1 - response regulator, at 1,029,232 to 1,030,335
Xcc-8004.1072.1
Position (kb) 1025
1026
1027
1028
1029 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1024.897 kb on + strand, within Xcc-8004.1069.1 at 1024.897 kb on + strand, within Xcc-8004.1069.1 at 1024.897 kb on + strand, within Xcc-8004.1069.1 at 1024.897 kb on + strand, within Xcc-8004.1069.1 at 1024.932 kb on + strand, within Xcc-8004.1069.1 at 1024.933 kb on - strand, within Xcc-8004.1069.1 at 1025.095 kb on - strand, within Xcc-8004.1069.1 at 1025.096 kb on + strand, within Xcc-8004.1069.1 at 1025.097 kb on - strand, within Xcc-8004.1069.1 at 1025.312 kb on + strand, within Xcc-8004.1069.1 at 1025.313 kb on - strand, within Xcc-8004.1069.1 at 1025.384 kb on + strand, within Xcc-8004.1069.1 at 1025.384 kb on + strand, within Xcc-8004.1069.1 at 1025.384 kb on + strand, within Xcc-8004.1069.1 at 1025.385 kb on - strand, within Xcc-8004.1069.1 at 1025.385 kb on - strand, within Xcc-8004.1069.1 at 1025.385 kb on - strand, within Xcc-8004.1069.1 at 1025.411 kb on + strand, within Xcc-8004.1069.1 at 1025.663 kb on + strand at 1025.663 kb on + strand at 1025.664 kb on - strand at 1025.761 kb on + strand at 1025.987 kb on + strand at 1025.987 kb on + strand at 1025.987 kb on + strand at 1025.988 kb on - strand at 1026.035 kb on + strand, within Xcc-8004.1071.1 at 1026.035 kb on + strand, within Xcc-8004.1071.1 at 1026.035 kb on + strand, within Xcc-8004.1071.1 at 1026.036 kb on - strand, within Xcc-8004.1071.1 at 1026.036 kb on - strand, within Xcc-8004.1071.1 at 1026.047 kb on + strand, within Xcc-8004.1071.1 at 1026.047 kb on + strand, within Xcc-8004.1071.1 at 1026.047 kb on + strand, within Xcc-8004.1071.1 at 1026.047 kb on + strand, within Xcc-8004.1071.1 at 1026.067 kb on + strand, within Xcc-8004.1071.1 at 1026.068 kb on - strand, within Xcc-8004.1071.1 at 1026.192 kb on - strand, within Xcc-8004.1071.1 at 1026.243 kb on - strand, within Xcc-8004.1071.1 at 1026.266 kb on + strand, within Xcc-8004.1071.1 at 1026.267 kb on - strand, within Xcc-8004.1071.1 at 1026.308 kb on + strand, within Xcc-8004.1071.1 at 1026.308 kb on + strand, within Xcc-8004.1071.1 at 1026.309 kb on - strand, within Xcc-8004.1071.1 at 1026.309 kb on - strand, within Xcc-8004.1071.1 at 1026.365 kb on + strand, within Xcc-8004.1071.1 at 1026.365 kb on + strand, within Xcc-8004.1071.1 at 1026.366 kb on - strand, within Xcc-8004.1071.1 at 1026.366 kb on - strand, within Xcc-8004.1071.1 at 1026.481 kb on + strand, within Xcc-8004.1071.1 at 1026.482 kb on - strand, within Xcc-8004.1071.1 at 1026.494 kb on + strand, within Xcc-8004.1071.1 at 1026.494 kb on + strand, within Xcc-8004.1071.1 at 1026.495 kb on - strand, within Xcc-8004.1071.1 at 1026.495 kb on - strand, within Xcc-8004.1071.1 at 1026.564 kb on - strand, within Xcc-8004.1071.1 at 1026.564 kb on - strand, within Xcc-8004.1071.1 at 1026.564 kb on - strand, within Xcc-8004.1071.1 at 1026.564 kb on - strand, within Xcc-8004.1071.1 at 1026.591 kb on - strand, within Xcc-8004.1071.1 at 1026.593 kb on + strand, within Xcc-8004.1071.1 at 1026.594 kb on - strand, within Xcc-8004.1071.1 at 1026.594 kb on - strand, within Xcc-8004.1071.1 at 1026.594 kb on - strand, within Xcc-8004.1071.1 at 1026.634 kb on + strand, within Xcc-8004.1071.1 at 1026.662 kb on + strand, within Xcc-8004.1071.1 at 1026.704 kb on + strand, within Xcc-8004.1071.1 at 1026.705 kb on - strand, within Xcc-8004.1071.1 at 1026.705 kb on - strand, within Xcc-8004.1071.1 at 1026.785 kb on - strand, within Xcc-8004.1071.1 at 1026.791 kb on - strand, within Xcc-8004.1071.1 at 1026.797 kb on + strand, within Xcc-8004.1071.1 at 1026.800 kb on + strand, within Xcc-8004.1071.1 at 1026.800 kb on + strand, within Xcc-8004.1071.1 at 1026.800 kb on + strand, within Xcc-8004.1071.1 at 1026.800 kb on + strand, within Xcc-8004.1071.1 at 1026.801 kb on - strand, within Xcc-8004.1071.1 at 1026.801 kb on - strand, within Xcc-8004.1071.1 at 1026.959 kb on + strand, within Xcc-8004.1071.1 at 1026.959 kb on + strand, within Xcc-8004.1071.1 at 1026.959 kb on + strand, within Xcc-8004.1071.1 at 1026.959 kb on + strand, within Xcc-8004.1071.1 at 1026.960 kb on - strand, within Xcc-8004.1071.1 at 1026.960 kb on - strand, within Xcc-8004.1071.1 at 1026.960 kb on - strand, within Xcc-8004.1071.1 at 1026.968 kb on + strand, within Xcc-8004.1071.1 at 1026.968 kb on + strand, within Xcc-8004.1071.1 at 1026.968 kb on + strand, within Xcc-8004.1071.1 at 1026.968 kb on + strand, within Xcc-8004.1071.1 at 1026.969 kb on - strand, within Xcc-8004.1071.1 at 1026.969 kb on - strand, within Xcc-8004.1071.1 at 1026.969 kb on - strand, within Xcc-8004.1071.1 at 1026.969 kb on - strand, within Xcc-8004.1071.1 at 1027.175 kb on + strand, within Xcc-8004.1071.1 at 1027.175 kb on + strand, within Xcc-8004.1071.1 at 1027.175 kb on + strand, within Xcc-8004.1071.1 at 1027.176 kb on - strand, within Xcc-8004.1071.1 at 1027.176 kb on - strand, within Xcc-8004.1071.1 at 1027.176 kb on - strand, within Xcc-8004.1071.1 at 1027.176 kb on - strand, within Xcc-8004.1071.1 at 1027.346 kb on + strand, within Xcc-8004.1071.1 at 1027.346 kb on + strand, within Xcc-8004.1071.1 at 1027.347 kb on - strand, within Xcc-8004.1071.1 at 1027.385 kb on + strand, within Xcc-8004.1071.1 at 1027.386 kb on - strand, within Xcc-8004.1071.1 at 1027.403 kb on + strand, within Xcc-8004.1071.1 at 1027.404 kb on - strand, within Xcc-8004.1071.1 at 1027.479 kb on - strand, within Xcc-8004.1071.1 at 1027.479 kb on - strand, within Xcc-8004.1071.1 at 1027.487 kb on + strand, within Xcc-8004.1071.1 at 1027.487 kb on + strand, within Xcc-8004.1071.1 at 1027.487 kb on + strand, within Xcc-8004.1071.1 at 1027.488 kb on - strand, within Xcc-8004.1071.1 at 1027.568 kb on + strand, within Xcc-8004.1071.1 at 1027.569 kb on - strand, within Xcc-8004.1071.1 at 1027.569 kb on - strand, within Xcc-8004.1071.1 at 1027.634 kb on - strand, within Xcc-8004.1071.1 at 1027.805 kb on - strand, within Xcc-8004.1071.1 at 1027.826 kb on + strand, within Xcc-8004.1071.1 at 1027.827 kb on - strand, within Xcc-8004.1071.1 at 1027.856 kb on + strand, within Xcc-8004.1071.1 at 1027.856 kb on + strand, within Xcc-8004.1071.1 at 1027.856 kb on + strand, within Xcc-8004.1071.1 at 1027.857 kb on - strand, within Xcc-8004.1071.1 at 1027.857 kb on - strand, within Xcc-8004.1071.1 at 1027.857 kb on - strand, within Xcc-8004.1071.1 at 1027.965 kb on - strand, within Xcc-8004.1071.1 at 1027.985 kb on + strand, within Xcc-8004.1071.1 at 1028.078 kb on + strand, within Xcc-8004.1071.1 at 1028.079 kb on - strand, within Xcc-8004.1071.1 at 1028.079 kb on - strand, within Xcc-8004.1071.1 at 1028.118 kb on - strand, within Xcc-8004.1071.1 at 1028.151 kb on - strand, within Xcc-8004.1071.1 at 1028.162 kb on + strand, within Xcc-8004.1071.1 at 1028.163 kb on - strand, within Xcc-8004.1071.1 at 1028.164 kb on + strand, within Xcc-8004.1071.1 at 1028.164 kb on + strand, within Xcc-8004.1071.1 at 1028.165 kb on - strand, within Xcc-8004.1071.1 at 1028.294 kb on + strand, within Xcc-8004.1071.1 at 1028.295 kb on - strand, within Xcc-8004.1071.1 at 1028.312 kb on + strand, within Xcc-8004.1071.1 at 1028.357 kb on + strand at 1028.358 kb on - strand at 1028.358 kb on - strand at 1028.358 kb on - strand at 1028.420 kb on + strand at 1028.420 kb on + strand at 1028.561 kb on + strand at 1028.585 kb on + strand at 1028.586 kb on - strand at 1028.617 kb on + strand at 1028.618 kb on - strand at 1028.679 kb on - strand at 1028.679 kb on - strand at 1028.679 kb on - strand at 1028.679 kb on - strand at 1028.736 kb on + strand at 1028.737 kb on - strand at 1028.816 kb on + strand at 1028.832 kb on + strand at 1028.832 kb on + strand at 1028.832 kb on + strand at 1028.832 kb on + strand at 1028.832 kb on + strand at 1028.832 kb on + strand at 1028.833 kb on - strand at 1028.833 kb on - strand at 1028.833 kb on - strand at 1028.833 kb on - strand at 1028.838 kb on + strand at 1028.838 kb on + strand at 1028.838 kb on + strand at 1028.839 kb on - strand at 1028.839 kb on - strand at 1028.941 kb on - strand at 1028.941 kb on - strand at 1028.954 kb on - strand at 1028.954 kb on - strand at 1028.954 kb on - strand at 1028.954 kb on - strand at 1028.954 kb on - strand at 1028.972 kb on - strand at 1029.004 kb on + strand at 1029.017 kb on + strand at 1029.017 kb on + strand at 1029.018 kb on - strand at 1029.018 kb on - strand at 1029.018 kb on - strand at 1029.072 kb on + strand at 1029.135 kb on - strand at 1029.150 kb on + strand at 1029.151 kb on - strand at 1029.151 kb on - strand at 1029.151 kb on - strand at 1029.151 kb on - strand at 1029.151 kb on - strand at 1029.156 kb on + strand at 1029.157 kb on - strand at 1029.157 kb on - strand at 1029.157 kb on - strand at 1029.190 kb on + strand at 1029.190 kb on + strand at 1029.191 kb on - strand at 1029.191 kb on - strand at 1029.191 kb on - strand at 1029.233 kb on + strand at 1029.233 kb on + strand at 1029.234 kb on - strand at 1029.314 kb on + strand at 1029.314 kb on + strand at 1029.314 kb on + strand at 1029.314 kb on + strand at 1029.314 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 1,024,897 + Xcc-8004.1069.1 0.14 +0.9 1,024,897 + Xcc-8004.1069.1 0.14 +0.9 1,024,897 + Xcc-8004.1069.1 0.14 +1.3 1,024,897 + Xcc-8004.1069.1 0.14 +2.5 1,024,932 + Xcc-8004.1069.1 0.18 +0.2 1,024,933 - Xcc-8004.1069.1 0.18 +2.5 1,025,095 - Xcc-8004.1069.1 0.36 +1.4 1,025,096 + Xcc-8004.1069.1 0.36 +1.2 1,025,097 - Xcc-8004.1069.1 0.36 +0.9 1,025,312 + Xcc-8004.1069.1 0.60 +0.5 1,025,313 - Xcc-8004.1069.1 0.61 +0.2 1,025,384 + Xcc-8004.1069.1 0.68 +1.1 1,025,384 + Xcc-8004.1069.1 0.68 -2.2 1,025,384 + Xcc-8004.1069.1 0.68 +2.5 1,025,385 - Xcc-8004.1069.1 0.69 +2.2 1,025,385 - Xcc-8004.1069.1 0.69 -2.5 1,025,385 - Xcc-8004.1069.1 0.69 +1.7 1,025,411 + Xcc-8004.1069.1 0.71 -0.6 1,025,663 + -0.1 1,025,663 + -0.8 1,025,664 - +2.3 1,025,761 + +0.9 1,025,987 + -2.2 1,025,987 + -0.9 1,025,987 + +1.5 1,025,988 - +0.8 1,026,035 + Xcc-8004.1071.1 0.11 +1.1 1,026,035 + Xcc-8004.1071.1 0.11 -0.4 1,026,035 + Xcc-8004.1071.1 0.11 +0.5 1,026,036 - Xcc-8004.1071.1 0.11 +1.1 1,026,036 - Xcc-8004.1071.1 0.11 -0.5 1,026,047 + Xcc-8004.1071.1 0.12 +0.9 1,026,047 + Xcc-8004.1071.1 0.12 +4.0 1,026,047 + Xcc-8004.1071.1 0.12 -0.1 1,026,047 + Xcc-8004.1071.1 0.12 +1.1 1,026,067 + Xcc-8004.1071.1 0.12 -0.4 1,026,068 - Xcc-8004.1071.1 0.12 +1.0 1,026,192 - Xcc-8004.1071.1 0.17 +1.8 1,026,243 - Xcc-8004.1071.1 0.18 +1.7 1,026,266 + Xcc-8004.1071.1 0.19 -0.8 1,026,267 - Xcc-8004.1071.1 0.19 -0.6 1,026,308 + Xcc-8004.1071.1 0.21 +0.7 1,026,308 + Xcc-8004.1071.1 0.21 -1.6 1,026,309 - Xcc-8004.1071.1 0.21 +1.0 1,026,309 - Xcc-8004.1071.1 0.21 +1.4 1,026,365 + Xcc-8004.1071.1 0.23 +2.0 1,026,365 + Xcc-8004.1071.1 0.23 -0.0 1,026,366 - Xcc-8004.1071.1 0.23 -3.5 1,026,366 - Xcc-8004.1071.1 0.23 -1.0 1,026,481 + Xcc-8004.1071.1 0.27 -0.8 1,026,482 - Xcc-8004.1071.1 0.27 -1.4 1,026,494 + Xcc-8004.1071.1 0.27 +3.1 1,026,494 + Xcc-8004.1071.1 0.27 -1.9 1,026,495 - Xcc-8004.1071.1 0.27 +1.6 1,026,495 - Xcc-8004.1071.1 0.27 -0.4 1,026,564 - Xcc-8004.1071.1 0.29 +1.9 1,026,564 - Xcc-8004.1071.1 0.29 -1.9 1,026,564 - Xcc-8004.1071.1 0.29 -0.6 1,026,564 - Xcc-8004.1071.1 0.29 -1.3 1,026,591 - Xcc-8004.1071.1 0.30 +1.0 1,026,593 + Xcc-8004.1071.1 0.30 +1.6 1,026,594 - Xcc-8004.1071.1 0.30 +1.2 1,026,594 - Xcc-8004.1071.1 0.30 -0.0 1,026,594 - Xcc-8004.1071.1 0.30 +1.3 1,026,634 + Xcc-8004.1071.1 0.32 +1.0 1,026,662 + Xcc-8004.1071.1 0.33 +1.7 1,026,704 + Xcc-8004.1071.1 0.34 +1.0 1,026,705 - Xcc-8004.1071.1 0.34 +0.9 1,026,705 - Xcc-8004.1071.1 0.34 +1.5 1,026,785 - Xcc-8004.1071.1 0.37 +0.7 1,026,791 - Xcc-8004.1071.1 0.37 +1.4 1,026,797 + Xcc-8004.1071.1 0.37 +1.6 1,026,800 + Xcc-8004.1071.1 0.38 +1.0 1,026,800 + Xcc-8004.1071.1 0.38 +0.9 1,026,800 + Xcc-8004.1071.1 0.38 +1.9 1,026,800 + Xcc-8004.1071.1 0.38 +0.5 1,026,801 - Xcc-8004.1071.1 0.38 +1.2 1,026,801 - Xcc-8004.1071.1 0.38 +1.0 1,026,959 + Xcc-8004.1071.1 0.43 +1.3 1,026,959 + Xcc-8004.1071.1 0.43 +1.4 1,026,959 + Xcc-8004.1071.1 0.43 -0.1 1,026,959 + Xcc-8004.1071.1 0.43 +0.7 1,026,960 - Xcc-8004.1071.1 0.43 -0.1 1,026,960 - Xcc-8004.1071.1 0.43 +1.2 1,026,960 - Xcc-8004.1071.1 0.43 +0.8 1,026,968 + Xcc-8004.1071.1 0.43 -0.6 1,026,968 + Xcc-8004.1071.1 0.43 +0.4 1,026,968 + Xcc-8004.1071.1 0.43 -0.1 1,026,968 + Xcc-8004.1071.1 0.43 +0.4 1,026,969 - Xcc-8004.1071.1 0.43 -0.8 1,026,969 - Xcc-8004.1071.1 0.43 +1.2 1,026,969 - Xcc-8004.1071.1 0.43 +1.7 1,026,969 - Xcc-8004.1071.1 0.43 +1.5 1,027,175 + Xcc-8004.1071.1 0.51 -1.0 1,027,175 + Xcc-8004.1071.1 0.51 -0.9 1,027,175 + Xcc-8004.1071.1 0.51 -0.9 1,027,176 - Xcc-8004.1071.1 0.51 +1.1 1,027,176 - Xcc-8004.1071.1 0.51 +0.0 1,027,176 - Xcc-8004.1071.1 0.51 -0.5 1,027,176 - Xcc-8004.1071.1 0.51 +1.3 1,027,346 + Xcc-8004.1071.1 0.56 -1.3 1,027,346 + Xcc-8004.1071.1 0.56 -1.4 1,027,347 - Xcc-8004.1071.1 0.57 +2.0 1,027,385 + Xcc-8004.1071.1 0.58 +1.9 1,027,386 - Xcc-8004.1071.1 0.58 +1.3 1,027,403 + Xcc-8004.1071.1 0.58 +0.3 1,027,404 - Xcc-8004.1071.1 0.58 +1.7 1,027,479 - Xcc-8004.1071.1 0.61 +2.1 1,027,479 - Xcc-8004.1071.1 0.61 +2.3 1,027,487 + Xcc-8004.1071.1 0.61 +1.2 1,027,487 + Xcc-8004.1071.1 0.61 -3.0 1,027,487 + Xcc-8004.1071.1 0.61 +2.4 1,027,488 - Xcc-8004.1071.1 0.61 +1.4 1,027,568 + Xcc-8004.1071.1 0.64 +0.5 1,027,569 - Xcc-8004.1071.1 0.64 +1.1 1,027,569 - Xcc-8004.1071.1 0.64 +0.4 1,027,634 - Xcc-8004.1071.1 0.66 +1.8 1,027,805 - Xcc-8004.1071.1 0.72 +4.7 1,027,826 + Xcc-8004.1071.1 0.73 -0.1 1,027,827 - Xcc-8004.1071.1 0.73 +0.5 1,027,856 + Xcc-8004.1071.1 0.74 -0.4 1,027,856 + Xcc-8004.1071.1 0.74 +0.6 1,027,856 + Xcc-8004.1071.1 0.74 +1.3 1,027,857 - Xcc-8004.1071.1 0.74 +3.0 1,027,857 - Xcc-8004.1071.1 0.74 +1.9 1,027,857 - Xcc-8004.1071.1 0.74 +1.3 1,027,965 - Xcc-8004.1071.1 0.78 +1.1 1,027,985 + Xcc-8004.1071.1 0.79 +1.8 1,028,078 + Xcc-8004.1071.1 0.82 +0.9 1,028,079 - Xcc-8004.1071.1 0.82 +1.4 1,028,079 - Xcc-8004.1071.1 0.82 +1.5 1,028,118 - Xcc-8004.1071.1 0.83 -0.8 1,028,151 - Xcc-8004.1071.1 0.84 +0.6 1,028,162 + Xcc-8004.1071.1 0.85 +1.8 1,028,163 - Xcc-8004.1071.1 0.85 +0.9 1,028,164 + Xcc-8004.1071.1 0.85 -0.8 1,028,164 + Xcc-8004.1071.1 0.85 +1.3 1,028,165 - Xcc-8004.1071.1 0.85 +0.5 1,028,294 + Xcc-8004.1071.1 0.89 +0.9 1,028,295 - Xcc-8004.1071.1 0.89 +2.0 1,028,312 + Xcc-8004.1071.1 0.90 +3.2 1,028,357 + +1.1 1,028,358 - +2.0 1,028,358 - +2.5 1,028,358 - +2.3 1,028,420 + +1.3 1,028,420 + -2.6 1,028,561 + +1.5 1,028,585 + +1.5 1,028,586 - +0.4 1,028,617 + +1.3 1,028,618 - -1.1 1,028,679 - -0.6 1,028,679 - -0.7 1,028,679 - -0.2 1,028,679 - +0.3 1,028,736 + -0.3 1,028,737 - +2.1 1,028,816 + +0.5 1,028,832 + +0.5 1,028,832 + -1.7 1,028,832 + +0.7 1,028,832 + +1.3 1,028,832 + +1.4 1,028,832 + -1.6 1,028,833 - +1.2 1,028,833 - +0.8 1,028,833 - -2.2 1,028,833 - -2.0 1,028,838 + -1.6 1,028,838 + +0.2 1,028,838 + +0.8 1,028,839 - -1.1 1,028,839 - -0.6 1,028,941 - +1.3 1,028,941 - +1.5 1,028,954 - -0.5 1,028,954 - +3.7 1,028,954 - -0.2 1,028,954 - -1.2 1,028,954 - +0.2 1,028,972 - -2.6 1,029,004 + -1.7 1,029,017 + +0.2 1,029,017 + +0.5 1,029,018 - -2.9 1,029,018 - -0.1 1,029,018 - +0.7 1,029,072 + +0.6 1,029,135 - -1.0 1,029,150 + -2.9 1,029,151 - +0.1 1,029,151 - +2.4 1,029,151 - -3.4 1,029,151 - +1.5 1,029,151 - +1.3 1,029,156 + -0.2 1,029,157 - -1.1 1,029,157 - -0.6 1,029,157 - +1.5 1,029,190 + -0.3 1,029,190 + -1.8 1,029,191 - -0.3 1,029,191 - +1.3 1,029,191 - -0.2 1,029,233 + -0.6 1,029,233 + -0.3 1,029,234 - -2.5 1,029,314 + -0.8 1,029,314 + -1.2 1,029,314 + -1.3 1,029,314 + -2.9 1,029,314 + -0.0
Or see this region's nucleotide sequence