Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1069.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1068.1 and Xcc-8004.1069.1 are separated by 119 nucleotidesXcc-8004.1069.1 and Xcc-8004.1071.1 are separated by 48 nucleotides Xcc-8004.1068.1: Xcc-8004.1068.1 - Transcriptional activator cadC, at 1,022,328 to 1,024,652 Xcc-8004.1068.1 Xcc-8004.1069.1: Xcc-8004.1069.1 - Transcriptional regulator, at 1,024,772 to 1,025,665 Xcc-8004.1069.1 Xcc-8004.1071.1: Xcc-8004.1071.1 - hypothetical protein, at 1,025,714 to 1,028,602 Xcc-8004.1071.1 Position (kb) 1024 1025 1026Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1023.787 kb on - strand, within Xcc-8004.1068.1at 1023.889 kb on - strand, within Xcc-8004.1068.1at 1024.038 kb on + strand, within Xcc-8004.1068.1at 1024.039 kb on - strand, within Xcc-8004.1068.1at 1024.039 kb on - strand, within Xcc-8004.1068.1at 1024.039 kb on - strand, within Xcc-8004.1068.1at 1024.039 kb on - strand, within Xcc-8004.1068.1at 1024.110 kb on + strand, within Xcc-8004.1068.1at 1024.110 kb on + strand, within Xcc-8004.1068.1at 1024.111 kb on - strand, within Xcc-8004.1068.1at 1024.111 kb on - strand, within Xcc-8004.1068.1at 1024.111 kb on - strand, within Xcc-8004.1068.1at 1024.111 kb on - strand, within Xcc-8004.1068.1at 1024.179 kb on + strand, within Xcc-8004.1068.1at 1024.179 kb on + strand, within Xcc-8004.1068.1at 1024.180 kb on - strand, within Xcc-8004.1068.1at 1024.228 kb on + strand, within Xcc-8004.1068.1at 1024.228 kb on + strand, within Xcc-8004.1068.1at 1024.229 kb on - strand, within Xcc-8004.1068.1at 1024.407 kb on + strand, within Xcc-8004.1068.1at 1024.407 kb on + strand, within Xcc-8004.1068.1at 1024.407 kb on + strand, within Xcc-8004.1068.1at 1024.408 kb on - strand, within Xcc-8004.1068.1at 1024.408 kb on - strand, within Xcc-8004.1068.1at 1024.408 kb on - strand, within Xcc-8004.1068.1at 1024.408 kb on - strand, within Xcc-8004.1068.1at 1024.408 kb on - strand, within Xcc-8004.1068.1at 1024.491 kb on + strandat 1024.491 kb on + strandat 1024.491 kb on + strandat 1024.539 kb on + strandat 1024.539 kb on + strandat 1024.539 kb on + strandat 1024.539 kb on + strandat 1024.540 kb on - strandat 1024.540 kb on - strandat 1024.540 kb on - strandat 1024.540 kb on - strandat 1024.540 kb on - strandat 1024.540 kb on - strandat 1024.540 kb on - strandat 1024.660 kb on - strandat 1024.660 kb on - strandat 1024.897 kb on + strand, within Xcc-8004.1069.1at 1024.897 kb on + strand, within Xcc-8004.1069.1at 1024.897 kb on + strand, within Xcc-8004.1069.1at 1024.897 kb on + strand, within Xcc-8004.1069.1at 1024.932 kb on + strand, within Xcc-8004.1069.1at 1024.933 kb on - strand, within Xcc-8004.1069.1at 1025.095 kb on - strand, within Xcc-8004.1069.1at 1025.096 kb on + strand, within Xcc-8004.1069.1at 1025.097 kb on - strand, within Xcc-8004.1069.1at 1025.312 kb on + strand, within Xcc-8004.1069.1at 1025.313 kb on - strand, within Xcc-8004.1069.1at 1025.384 kb on + strand, within Xcc-8004.1069.1at 1025.384 kb on + strand, within Xcc-8004.1069.1at 1025.384 kb on + strand, within Xcc-8004.1069.1at 1025.385 kb on - strand, within Xcc-8004.1069.1at 1025.385 kb on - strand, within Xcc-8004.1069.1at 1025.385 kb on - strand, within Xcc-8004.1069.1at 1025.411 kb on + strand, within Xcc-8004.1069.1at 1025.663 kb on + strandat 1025.663 kb on + strandat 1025.664 kb on - strandat 1025.761 kb on + strandat 1025.987 kb on + strandat 1025.987 kb on + strandat 1025.987 kb on + strandat 1025.988 kb on - strandat 1026.035 kb on + strand, within Xcc-8004.1071.1at 1026.035 kb on + strand, within Xcc-8004.1071.1at 1026.035 kb on + strand, within Xcc-8004.1071.1at 1026.036 kb on - strand, within Xcc-8004.1071.1at 1026.036 kb on - strand, within Xcc-8004.1071.1at 1026.047 kb on + strand, within Xcc-8004.1071.1at 1026.047 kb on + strand, within Xcc-8004.1071.1at 1026.047 kb on + strand, within Xcc-8004.1071.1at 1026.047 kb on + strand, within Xcc-8004.1071.1at 1026.067 kb on + strand, within Xcc-8004.1071.1at 1026.068 kb on - strand, within Xcc-8004.1071.1at 1026.192 kb on - strand, within Xcc-8004.1071.1at 1026.243 kb on - strand, within Xcc-8004.1071.1at 1026.266 kb on + strand, within Xcc-8004.1071.1at 1026.267 kb on - strand, within Xcc-8004.1071.1at 1026.308 kb on + strand, within Xcc-8004.1071.1at 1026.308 kb on + strand, within Xcc-8004.1071.1at 1026.309 kb on - strand, within Xcc-8004.1071.1at 1026.309 kb on - strand, within Xcc-8004.1071.1at 1026.365 kb on + strand, within Xcc-8004.1071.1at 1026.365 kb on + strand, within Xcc-8004.1071.1at 1026.366 kb on - strand, within Xcc-8004.1071.1at 1026.366 kb on - strand, within Xcc-8004.1071.1at 1026.481 kb on + strand, within Xcc-8004.1071.1at 1026.482 kb on - strand, within Xcc-8004.1071.1at 1026.494 kb on + strand, within Xcc-8004.1071.1at 1026.494 kb on + strand, within Xcc-8004.1071.1at 1026.495 kb on - strand, within Xcc-8004.1071.1at 1026.495 kb on - strand, within Xcc-8004.1071.1at 1026.564 kb on - strand, within Xcc-8004.1071.1at 1026.564 kb on - strand, within Xcc-8004.1071.1at 1026.564 kb on - strand, within Xcc-8004.1071.1at 1026.564 kb on - strand, within Xcc-8004.1071.1at 1026.591 kb on - strand, within Xcc-8004.1071.1at 1026.593 kb on + strand, within Xcc-8004.1071.1at 1026.594 kb on - strand, within Xcc-8004.1071.1at 1026.594 kb on - strand, within Xcc-8004.1071.1at 1026.594 kb on - strand, within Xcc-8004.1071.1at 1026.634 kb on + strand, within Xcc-8004.1071.1at 1026.662 kb on + strand, within Xcc-8004.1071.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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1,023,787 - Xcc-8004.1068.1 0.63 +0.3
1,023,889 - Xcc-8004.1068.1 0.67 +0.6
1,024,038 + Xcc-8004.1068.1 0.74 -0.3
1,024,039 - Xcc-8004.1068.1 0.74 +0.3
1,024,039 - Xcc-8004.1068.1 0.74 -0.9
1,024,039 - Xcc-8004.1068.1 0.74 +1.5
1,024,039 - Xcc-8004.1068.1 0.74 -0.6
1,024,110 + Xcc-8004.1068.1 0.77 +1.4
1,024,110 + Xcc-8004.1068.1 0.77 +0.3
1,024,111 - Xcc-8004.1068.1 0.77 +3.0
1,024,111 - Xcc-8004.1068.1 0.77 +1.5
1,024,111 - Xcc-8004.1068.1 0.77 +1.2
1,024,111 - Xcc-8004.1068.1 0.77 +0.2
1,024,179 + Xcc-8004.1068.1 0.80 -1.9
1,024,179 + Xcc-8004.1068.1 0.80 +1.5
1,024,180 - Xcc-8004.1068.1 0.80 -0.4
1,024,228 + Xcc-8004.1068.1 0.82 -0.8
1,024,228 + Xcc-8004.1068.1 0.82 +0.7
1,024,229 - Xcc-8004.1068.1 0.82 +1.1
1,024,407 + Xcc-8004.1068.1 0.89 -0.3
1,024,407 + Xcc-8004.1068.1 0.89 +1.6
1,024,407 + Xcc-8004.1068.1 0.89 +2.0
1,024,408 - Xcc-8004.1068.1 0.89 -0.4
1,024,408 - Xcc-8004.1068.1 0.89 +1.0
1,024,408 - Xcc-8004.1068.1 0.89 -1.6
1,024,408 - Xcc-8004.1068.1 0.89 +1.6
1,024,408 - Xcc-8004.1068.1 0.89 +2.2
1,024,491 + +1.8
1,024,491 + +0.9
1,024,491 + +1.0
1,024,539 + +1.2
1,024,539 + +0.3
1,024,539 + +0.8
1,024,539 + +0.6
1,024,540 - +2.2
1,024,540 - -0.2
1,024,540 - +2.0
1,024,540 - +0.7
1,024,540 - +2.0
1,024,540 - +1.4
1,024,540 - +0.1
1,024,660 - -1.6
1,024,660 - -2.5
1,024,897 + Xcc-8004.1069.1 0.14 +0.9
1,024,897 + Xcc-8004.1069.1 0.14 +0.9
1,024,897 + Xcc-8004.1069.1 0.14 +1.3
1,024,897 + Xcc-8004.1069.1 0.14 +2.5
1,024,932 + Xcc-8004.1069.1 0.18 +0.2
1,024,933 - Xcc-8004.1069.1 0.18 +2.5
1,025,095 - Xcc-8004.1069.1 0.36 +1.4
1,025,096 + Xcc-8004.1069.1 0.36 +1.2
1,025,097 - Xcc-8004.1069.1 0.36 +0.9
1,025,312 + Xcc-8004.1069.1 0.60 +0.5
1,025,313 - Xcc-8004.1069.1 0.61 +0.2
1,025,384 + Xcc-8004.1069.1 0.68 +1.1
1,025,384 + Xcc-8004.1069.1 0.68 -2.2
1,025,384 + Xcc-8004.1069.1 0.68 +2.5
1,025,385 - Xcc-8004.1069.1 0.69 +2.2
1,025,385 - Xcc-8004.1069.1 0.69 -2.5
1,025,385 - Xcc-8004.1069.1 0.69 +1.7
1,025,411 + Xcc-8004.1069.1 0.71 -0.6
1,025,663 + -0.1
1,025,663 + -0.8
1,025,664 - +2.3
1,025,761 + +0.9
1,025,987 + -2.2
1,025,987 + -0.9
1,025,987 + +1.5
1,025,988 - +0.8
1,026,035 + Xcc-8004.1071.1 0.11 +1.1
1,026,035 + Xcc-8004.1071.1 0.11 -0.4
1,026,035 + Xcc-8004.1071.1 0.11 +0.5
1,026,036 - Xcc-8004.1071.1 0.11 +1.1
1,026,036 - Xcc-8004.1071.1 0.11 -0.5
1,026,047 + Xcc-8004.1071.1 0.12 +0.9
1,026,047 + Xcc-8004.1071.1 0.12 +4.0
1,026,047 + Xcc-8004.1071.1 0.12 -0.1
1,026,047 + Xcc-8004.1071.1 0.12 +1.1
1,026,067 + Xcc-8004.1071.1 0.12 -0.4
1,026,068 - Xcc-8004.1071.1 0.12 +1.0
1,026,192 - Xcc-8004.1071.1 0.17 +1.8
1,026,243 - Xcc-8004.1071.1 0.18 +1.7
1,026,266 + Xcc-8004.1071.1 0.19 -0.8
1,026,267 - Xcc-8004.1071.1 0.19 -0.6
1,026,308 + Xcc-8004.1071.1 0.21 +0.7
1,026,308 + Xcc-8004.1071.1 0.21 -1.6
1,026,309 - Xcc-8004.1071.1 0.21 +1.0
1,026,309 - Xcc-8004.1071.1 0.21 +1.4
1,026,365 + Xcc-8004.1071.1 0.23 +2.0
1,026,365 + Xcc-8004.1071.1 0.23 -0.0
1,026,366 - Xcc-8004.1071.1 0.23 -3.5
1,026,366 - Xcc-8004.1071.1 0.23 -1.0
1,026,481 + Xcc-8004.1071.1 0.27 -0.8
1,026,482 - Xcc-8004.1071.1 0.27 -1.4
1,026,494 + Xcc-8004.1071.1 0.27 +3.1
1,026,494 + Xcc-8004.1071.1 0.27 -1.9
1,026,495 - Xcc-8004.1071.1 0.27 +1.6
1,026,495 - Xcc-8004.1071.1 0.27 -0.4
1,026,564 - Xcc-8004.1071.1 0.29 +1.9
1,026,564 - Xcc-8004.1071.1 0.29 -1.9
1,026,564 - Xcc-8004.1071.1 0.29 -0.6
1,026,564 - Xcc-8004.1071.1 0.29 -1.3
1,026,591 - Xcc-8004.1071.1 0.30 +1.0
1,026,593 + Xcc-8004.1071.1 0.30 +1.6
1,026,594 - Xcc-8004.1071.1 0.30 +1.2
1,026,594 - Xcc-8004.1071.1 0.30 -0.0
1,026,594 - Xcc-8004.1071.1 0.30 +1.3
1,026,634 + Xcc-8004.1071.1 0.32 +1.0
1,026,662 + Xcc-8004.1071.1 0.33 +1.7

Or see this region's nucleotide sequence