Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_981

Experiment: Nitrate reduction

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_979 and Pf1N1B4_980 are separated by 48 nucleotidesPf1N1B4_980 and Pf1N1B4_981 are separated by 60 nucleotidesPf1N1B4_981 and Pf1N1B4_982 are separated by 820 nucleotides Pf1N1B4_979 - Uricase (urate oxidase) (EC 1.7.3.3), at 1,107,170 to 1,108,294 _979 Pf1N1B4_980 - hypothetical protein, at 1,108,343 to 1,108,471 _980 Pf1N1B4_981 - UPF0246 protein YaaA, at 1,108,532 to 1,109,311 _981 Pf1N1B4_982 - GDP-mannose 6-dehydrogenase (EC 1.1.1.132), at 1,110,132 to 1,111,448 _982 Position (kb) 1108 1109 1110Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1107.582 kb on + strand, within Pf1N1B4_979at 1107.582 kb on + strand, within Pf1N1B4_979at 1107.582 kb on + strand, within Pf1N1B4_979at 1107.582 kb on + strand, within Pf1N1B4_979at 1107.583 kb on - strand, within Pf1N1B4_979at 1107.583 kb on - strand, within Pf1N1B4_979at 1107.583 kb on - strand, within Pf1N1B4_979at 1107.655 kb on + strand, within Pf1N1B4_979at 1107.656 kb on - strand, within Pf1N1B4_979at 1107.681 kb on + strand, within Pf1N1B4_979at 1107.682 kb on - strand, within Pf1N1B4_979at 1107.703 kb on + strand, within Pf1N1B4_979at 1107.704 kb on - strand, within Pf1N1B4_979at 1107.704 kb on - strand, within Pf1N1B4_979at 1107.704 kb on - strand, within Pf1N1B4_979at 1107.780 kb on + strand, within Pf1N1B4_979at 1107.852 kb on + strand, within Pf1N1B4_979at 1107.894 kb on + strand, within Pf1N1B4_979at 1107.894 kb on + strand, within Pf1N1B4_979at 1107.894 kb on + strand, within Pf1N1B4_979at 1107.894 kb on + strand, within Pf1N1B4_979at 1107.894 kb on + strand, within Pf1N1B4_979at 1107.894 kb on + strand, within Pf1N1B4_979at 1107.894 kb on + strand, within Pf1N1B4_979at 1107.894 kb on + strand, within Pf1N1B4_979at 1107.895 kb on - strand, within Pf1N1B4_979at 1107.895 kb on - strand, within Pf1N1B4_979at 1107.895 kb on - strand, within Pf1N1B4_979at 1107.895 kb on - strand, within Pf1N1B4_979at 1107.895 kb on - strandat 1107.895 kb on - strandat 1107.895 kb on - strand, within Pf1N1B4_979at 1107.895 kb on - strandat 1107.895 kb on - strand, within Pf1N1B4_979at 1107.895 kb on - strand, within Pf1N1B4_979at 1107.897 kb on + strand, within Pf1N1B4_979at 1107.897 kb on + strand, within Pf1N1B4_979at 1107.897 kb on + strand, within Pf1N1B4_979at 1107.897 kb on + strand, within Pf1N1B4_979at 1107.897 kb on + strand, within Pf1N1B4_979at 1107.897 kb on + strand, within Pf1N1B4_979at 1107.897 kb on + strand, within Pf1N1B4_979at 1107.897 kb on + strand, within Pf1N1B4_979at 1107.897 kb on + strand, within Pf1N1B4_979at 1107.897 kb on + strand, within Pf1N1B4_979at 1107.897 kb on + strandat 1107.897 kb on + strand, within Pf1N1B4_979at 1107.897 kb on + strand, within Pf1N1B4_979at 1107.897 kb on + strand, within Pf1N1B4_979at 1107.897 kb on + strand, within Pf1N1B4_979at 1107.898 kb on - strand, within Pf1N1B4_979at 1107.898 kb on - strand, within Pf1N1B4_979at 1107.898 kb on - strand, within Pf1N1B4_979at 1107.898 kb on - strand, within Pf1N1B4_979at 1107.898 kb on - strand, within Pf1N1B4_979at 1107.898 kb on - strand, within Pf1N1B4_979at 1107.898 kb on - strand, within Pf1N1B4_979at 1107.898 kb on - strandat 1107.898 kb on - strand, within Pf1N1B4_979at 1107.898 kb on - strand, within Pf1N1B4_979at 1107.898 kb on - strand, within Pf1N1B4_979at 1108.008 kb on + strand, within Pf1N1B4_979at 1108.008 kb on + strand, within Pf1N1B4_979at 1108.009 kb on - strand, within Pf1N1B4_979at 1108.009 kb on - strand, within Pf1N1B4_979at 1108.328 kb on + strandat 1108.328 kb on + strandat 1108.328 kb on + strandat 1108.328 kb on + strandat 1108.329 kb on - strandat 1108.330 kb on + strandat 1108.379 kb on + strand, within Pf1N1B4_980at 1108.403 kb on + strand, within Pf1N1B4_980at 1108.403 kb on + strand, within Pf1N1B4_980at 1108.404 kb on - strand, within Pf1N1B4_980at 1108.404 kb on - strand, within Pf1N1B4_980at 1108.404 kb on - strand, within Pf1N1B4_980at 1108.404 kb on - strand, within Pf1N1B4_980at 1108.460 kb on + strandat 1108.460 kb on + strandat 1108.460 kb on + strandat 1108.460 kb on + strandat 1108.460 kb on + strandat 1108.461 kb on - strandat 1108.461 kb on - strandat 1108.461 kb on - strandat 1108.471 kb on + strandat 1108.499 kb on - strandat 1108.499 kb on - strandat 1108.611 kb on - strand, within Pf1N1B4_981at 1108.793 kb on + strand, within Pf1N1B4_981at 1108.794 kb on - strand, within Pf1N1B4_981at 1108.794 kb on - strand, within Pf1N1B4_981at 1108.794 kb on - strand, within Pf1N1B4_981at 1108.794 kb on - strand, within Pf1N1B4_981at 1108.874 kb on + strand, within Pf1N1B4_981at 1108.874 kb on + strand, within Pf1N1B4_981at 1108.875 kb on - strand, within Pf1N1B4_981at 1108.875 kb on - strand, within Pf1N1B4_981at 1108.875 kb on - strand, within Pf1N1B4_981at 1108.962 kb on - strand, within Pf1N1B4_981at 1109.054 kb on + strand, within Pf1N1B4_981at 1109.054 kb on + strand, within Pf1N1B4_981at 1109.249 kb on + strandat 1109.267 kb on - strandat 1109.309 kb on + strandat 1109.309 kb on + strandat 1109.539 kb on - strandat 1109.721 kb on - strandat 1109.789 kb on - strandat 1109.943 kb on - strandat 1110.015 kb on - strandat 1110.047 kb on - strandat 1110.125 kb on - strandat 1110.145 kb on + strandat 1110.145 kb on + strandat 1110.146 kb on - strandat 1110.160 kb on - strandat 1110.172 kb on + strandat 1110.242 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction
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1,107,582 + Pf1N1B4_979 0.37 -1.5
1,107,582 + Pf1N1B4_979 0.37 -0.0
1,107,582 + Pf1N1B4_979 0.37 -0.0
1,107,582 + Pf1N1B4_979 0.37 -2.7
1,107,583 - Pf1N1B4_979 0.37 -1.9
1,107,583 - Pf1N1B4_979 0.37 -0.0
1,107,583 - Pf1N1B4_979 0.37 -0.0
1,107,655 + Pf1N1B4_979 0.43 -1.6
1,107,656 - Pf1N1B4_979 0.43 -0.0
1,107,681 + Pf1N1B4_979 0.45 -0.0
1,107,682 - Pf1N1B4_979 0.46 -0.0
1,107,703 + Pf1N1B4_979 0.47 -0.0
1,107,704 - Pf1N1B4_979 0.47 -1.6
1,107,704 - Pf1N1B4_979 0.47 -0.0
1,107,704 - Pf1N1B4_979 0.47 -0.0
1,107,780 + Pf1N1B4_979 0.54 -0.4
1,107,852 + Pf1N1B4_979 0.61 +0.2
1,107,894 + Pf1N1B4_979 0.64 -1.1
1,107,894 + Pf1N1B4_979 0.64 -0.0
1,107,894 + Pf1N1B4_979 0.64 -0.0
1,107,894 + Pf1N1B4_979 0.64 -0.5
1,107,894 + Pf1N1B4_979 0.64 -0.0
1,107,894 + Pf1N1B4_979 0.64 -1.0
1,107,894 + Pf1N1B4_979 0.64 -2.8
1,107,894 + Pf1N1B4_979 0.64 -2.2
1,107,895 - Pf1N1B4_979 0.64 -5.3
1,107,895 - Pf1N1B4_979 0.64 -0.0
1,107,895 - Pf1N1B4_979 0.64 -0.0
1,107,895 - Pf1N1B4_979 0.64 -2.3
1,107,895 - -0.0
1,107,895 - -0.0
1,107,895 - Pf1N1B4_979 0.64 -0.0
1,107,895 - -1.8
1,107,895 - Pf1N1B4_979 0.64 -0.0
1,107,895 - Pf1N1B4_979 0.64 -0.0
1,107,897 + Pf1N1B4_979 0.65 -0.0
1,107,897 + Pf1N1B4_979 0.65 -0.0
1,107,897 + Pf1N1B4_979 0.65 -0.0
1,107,897 + Pf1N1B4_979 0.65 -0.0
1,107,897 + Pf1N1B4_979 0.65 -0.0
1,107,897 + Pf1N1B4_979 0.65 -0.0
1,107,897 + Pf1N1B4_979 0.65 -0.0
1,107,897 + Pf1N1B4_979 0.65 -0.0
1,107,897 + Pf1N1B4_979 0.65 -0.0
1,107,897 + Pf1N1B4_979 0.65 -0.0
1,107,897 + -0.0
1,107,897 + Pf1N1B4_979 0.65 -0.0
1,107,897 + Pf1N1B4_979 0.65 -0.0
1,107,897 + Pf1N1B4_979 0.65 -0.8
1,107,897 + Pf1N1B4_979 0.65 -0.0
1,107,898 - Pf1N1B4_979 0.65 -0.0
1,107,898 - Pf1N1B4_979 0.65 -0.0
1,107,898 - Pf1N1B4_979 0.65 -0.0
1,107,898 - Pf1N1B4_979 0.65 -0.0
1,107,898 - Pf1N1B4_979 0.65 -4.7
1,107,898 - Pf1N1B4_979 0.65 -0.0
1,107,898 - Pf1N1B4_979 0.65 -0.0
1,107,898 - -2.7
1,107,898 - Pf1N1B4_979 0.65 -0.0
1,107,898 - Pf1N1B4_979 0.65 -0.0
1,107,898 - Pf1N1B4_979 0.65 -0.0
1,108,008 + Pf1N1B4_979 0.74 -0.0
1,108,008 + Pf1N1B4_979 0.74 -2.4
1,108,009 - Pf1N1B4_979 0.75 -0.0
1,108,009 - Pf1N1B4_979 0.75 -2.2
1,108,328 + -2.3
1,108,328 + -1.6
1,108,328 + -0.0
1,108,328 + -0.0
1,108,329 - -0.0
1,108,330 + -0.0
1,108,379 + Pf1N1B4_980 0.28 -0.0
1,108,403 + Pf1N1B4_980 0.47 -3.9
1,108,403 + Pf1N1B4_980 0.47 -0.0
1,108,404 - Pf1N1B4_980 0.47 -0.0
1,108,404 - Pf1N1B4_980 0.47 -0.0
1,108,404 - Pf1N1B4_980 0.47 -0.0
1,108,404 - Pf1N1B4_980 0.47 -0.0
1,108,460 + -1.7
1,108,460 + -1.8
1,108,460 + -1.7
1,108,460 + -1.5
1,108,460 + -3.3
1,108,461 - -0.0
1,108,461 - -0.0
1,108,461 - -0.0
1,108,471 + -0.0
1,108,499 - -2.7
1,108,499 - -0.0
1,108,611 - Pf1N1B4_981 0.10 -4.3
1,108,793 + Pf1N1B4_981 0.33 -0.0
1,108,794 - Pf1N1B4_981 0.34 -0.0
1,108,794 - Pf1N1B4_981 0.34 -0.0
1,108,794 - Pf1N1B4_981 0.34 -0.0
1,108,794 - Pf1N1B4_981 0.34 -4.0
1,108,874 + Pf1N1B4_981 0.44 -1.5
1,108,874 + Pf1N1B4_981 0.44 -0.0
1,108,875 - Pf1N1B4_981 0.44 -0.0
1,108,875 - Pf1N1B4_981 0.44 -3.3
1,108,875 - Pf1N1B4_981 0.44 -0.0
1,108,962 - Pf1N1B4_981 0.55 -2.2
1,109,054 + Pf1N1B4_981 0.67 -0.0
1,109,054 + Pf1N1B4_981 0.67 -0.0
1,109,249 + -0.0
1,109,267 - -5.3
1,109,309 + -0.0
1,109,309 + -0.0
1,109,539 - -0.9
1,109,721 - -0.0
1,109,789 - -0.0
1,109,943 - -0.0
1,110,015 - -2.4
1,110,047 - -0.0
1,110,125 - -0.0
1,110,145 + -5.2
1,110,145 + -0.0
1,110,146 - -0.0
1,110,160 - -0.0
1,110,172 + -1.5
1,110,242 + -0.0

Or see this region's nucleotide sequence