Experiment: Nitrate reduction
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_828 and Pf1N1B4_829 are separated by 475 nucleotides Pf1N1B4_829 and Pf1N1B4_830 overlap by 4 nucleotides Pf1N1B4_830 and Pf1N1B4_831 are separated by 501 nucleotides
Pf1N1B4_828 - Multicopper oxidase, at 948,992 to 950,368
_828
Pf1N1B4_829 - Mobile element protein, at 950,844 to 951,680
_829
Pf1N1B4_830 - Mobile element protein, at 951,677 to 951,979
_830
Pf1N1B4_831 - hypothetical protein, at 952,481 to 952,804
_831
Position (kb) 950
951
952 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 949.965 kb on + strand, within Pf1N1B4_828 at 949.966 kb on - strand, within Pf1N1B4_828 at 949.966 kb on - strand, within Pf1N1B4_828 at 949.993 kb on + strand, within Pf1N1B4_828 at 949.993 kb on + strand, within Pf1N1B4_828 at 949.994 kb on - strand at 949.995 kb on + strand, within Pf1N1B4_828 at 949.995 kb on + strand, within Pf1N1B4_828 at 949.996 kb on - strand, within Pf1N1B4_828 at 950.037 kb on + strand, within Pf1N1B4_828 at 950.037 kb on + strand, within Pf1N1B4_828 at 950.038 kb on - strand, within Pf1N1B4_828 at 950.038 kb on - strand, within Pf1N1B4_828 at 950.244 kb on + strand at 950.245 kb on - strand at 950.245 kb on - strand at 950.245 kb on - strand at 950.245 kb on - strand at 950.345 kb on + strand at 950.346 kb on - strand at 950.346 kb on - strand at 950.346 kb on - strand at 950.378 kb on + strand at 950.378 kb on + strand at 950.378 kb on + strand at 950.378 kb on + strand at 950.378 kb on + strand at 950.378 kb on + strand at 950.378 kb on + strand at 950.378 kb on + strand at 950.378 kb on + strand at 950.378 kb on + strand at 950.379 kb on - strand at 950.379 kb on - strand at 950.379 kb on - strand at 950.379 kb on - strand at 950.379 kb on - strand at 950.379 kb on - strand at 950.379 kb on - strand at 950.387 kb on + strand at 950.387 kb on + strand at 950.387 kb on + strand at 950.387 kb on + strand at 950.388 kb on - strand at 950.388 kb on - strand at 950.490 kb on + strand at 950.491 kb on - strand at 950.517 kb on + strand at 950.517 kb on + strand at 950.517 kb on + strand at 950.517 kb on + strand at 950.517 kb on + strand at 950.518 kb on - strand at 950.518 kb on - strand at 950.518 kb on - strand at 950.533 kb on - strand at 950.542 kb on - strand at 950.542 kb on - strand at 950.542 kb on - strand at 950.612 kb on - strand at 950.636 kb on + strand at 950.636 kb on + strand at 950.664 kb on - strand at 950.664 kb on - strand at 950.743 kb on - strand at 950.753 kb on - strand at 950.768 kb on - strand at 950.775 kb on - strand at 950.775 kb on - strand at 950.820 kb on + strand at 950.820 kb on + strand at 950.821 kb on - strand at 950.821 kb on - strand at 950.821 kb on - strand at 950.838 kb on - strand at 950.865 kb on - strand at 950.890 kb on + strand at 950.890 kb on + strand at 950.890 kb on + strand at 950.891 kb on - strand at 950.891 kb on - strand at 950.891 kb on - strand at 950.891 kb on - strand at 950.891 kb on - strand at 950.894 kb on + strand at 950.894 kb on + strand at 950.894 kb on + strand at 950.894 kb on + strand at 950.895 kb on - strand at 950.895 kb on - strand at 950.895 kb on - strand at 950.895 kb on - strand at 950.895 kb on - strand at 950.915 kb on - strand at 950.927 kb on - strand at 950.927 kb on - strand at 950.927 kb on - strand at 950.927 kb on - strand at 951.106 kb on + strand, within Pf1N1B4_829 at 951.107 kb on - strand, within Pf1N1B4_829 at 951.265 kb on + strand, within Pf1N1B4_829 at 951.265 kb on + strand, within Pf1N1B4_829 at 951.266 kb on - strand, within Pf1N1B4_829 at 951.266 kb on - strand, within Pf1N1B4_829 at 951.266 kb on - strand, within Pf1N1B4_829 at 951.292 kb on + strand, within Pf1N1B4_829 at 951.292 kb on + strand, within Pf1N1B4_829 at 951.292 kb on + strand, within Pf1N1B4_829 at 951.292 kb on + strand at 951.293 kb on - strand, within Pf1N1B4_829 at 951.293 kb on - strand, within Pf1N1B4_829 at 951.293 kb on - strand, within Pf1N1B4_829 at 951.293 kb on - strand, within Pf1N1B4_829 at 951.293 kb on - strand, within Pf1N1B4_829 at 951.293 kb on - strand, within Pf1N1B4_829 at 951.293 kb on - strand, within Pf1N1B4_829 at 951.391 kb on + strand, within Pf1N1B4_829 at 951.452 kb on + strand at 951.452 kb on + strand, within Pf1N1B4_829 at 951.452 kb on + strand, within Pf1N1B4_829 at 951.452 kb on + strand at 951.452 kb on + strand, within Pf1N1B4_829 at 951.452 kb on + strand, within Pf1N1B4_829 at 951.453 kb on - strand, within Pf1N1B4_829 at 951.554 kb on + strand, within Pf1N1B4_829 at 951.554 kb on + strand, within Pf1N1B4_829 at 951.554 kb on + strand, within Pf1N1B4_829 at 951.555 kb on - strand, within Pf1N1B4_829 at 951.555 kb on - strand, within Pf1N1B4_829 at 951.555 kb on - strand, within Pf1N1B4_829 at 951.605 kb on - strand at 951.605 kb on - strand at 951.729 kb on - strand, within Pf1N1B4_830 at 951.973 kb on + strand at 951.973 kb on + strand at 951.973 kb on + strand at 951.973 kb on + strand at 951.973 kb on + strand at 951.974 kb on - strand at 951.974 kb on - strand at 951.974 kb on - strand at 951.974 kb on - strand at 951.974 kb on - strand at 951.974 kb on - strand at 951.974 kb on - strand at 952.061 kb on + strand at 952.062 kb on - strand at 952.062 kb on - strand at 952.062 kb on - strand at 952.062 kb on - strand at 952.084 kb on - strand at 952.084 kb on - strand at 952.139 kb on + strand at 952.140 kb on - strand at 952.268 kb on + strand at 952.268 kb on + strand at 952.268 kb on + strand at 952.268 kb on + strand at 952.285 kb on + strand at 952.285 kb on + strand at 952.286 kb on - strand at 952.340 kb on - strand at 952.340 kb on - strand at 952.419 kb on + strand at 952.419 kb on + strand at 952.419 kb on + strand at 952.419 kb on + strand at 952.420 kb on - strand at 952.420 kb on - strand at 952.439 kb on - strand at 952.453 kb on + strand at 952.453 kb on + strand at 952.453 kb on + strand at 952.454 kb on - strand at 952.466 kb on - strand at 952.466 kb on - strand at 952.466 kb on - strand at 952.476 kb on + strand at 952.477 kb on - strand at 952.610 kb on - strand, within Pf1N1B4_831
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction remove 949,965 + Pf1N1B4_828 0.71 -0.0 949,966 - Pf1N1B4_828 0.71 -0.0 949,966 - Pf1N1B4_828 0.71 -2.8 949,993 + Pf1N1B4_828 0.73 -0.0 949,993 + Pf1N1B4_828 0.73 -0.0 949,994 - -0.0 949,995 + Pf1N1B4_828 0.73 -0.0 949,995 + Pf1N1B4_828 0.73 -0.0 949,996 - Pf1N1B4_828 0.73 -0.0 950,037 + Pf1N1B4_828 0.76 -0.0 950,037 + Pf1N1B4_828 0.76 -0.0 950,038 - Pf1N1B4_828 0.76 -0.0 950,038 - Pf1N1B4_828 0.76 -2.0 950,244 + -0.0 950,245 - -0.0 950,245 - -0.0 950,245 - -0.0 950,245 - -2.2 950,345 + -0.0 950,346 - -0.0 950,346 - -2.8 950,346 - -0.0 950,378 + -0.0 950,378 + -0.0 950,378 + -0.0 950,378 + -0.0 950,378 + -0.0 950,378 + -0.0 950,378 + -0.0 950,378 + -1.3 950,378 + -0.0 950,378 + -0.0 950,379 - -0.7 950,379 - -0.0 950,379 - -1.0 950,379 - -1.9 950,379 - -0.0 950,379 - -0.0 950,379 - -1.6 950,387 + -0.0 950,387 + -0.0 950,387 + -0.0 950,387 + -0.0 950,388 - -2.7 950,388 - -0.0 950,490 + -4.8 950,491 - -0.0 950,517 + -0.0 950,517 + -0.0 950,517 + -0.0 950,517 + -0.0 950,517 + -0.0 950,518 - -0.0 950,518 - -0.0 950,518 - -0.0 950,533 - -5.3 950,542 - -0.0 950,542 - -0.0 950,542 - -0.0 950,612 - -0.0 950,636 + -2.2 950,636 + -0.0 950,664 - -0.0 950,664 - -0.0 950,743 - -0.0 950,753 - -0.0 950,768 - -0.0 950,775 - -0.0 950,775 - -0.0 950,820 + -0.0 950,820 + -0.0 950,821 - -0.0 950,821 - -1.6 950,821 - -0.0 950,838 - -0.0 950,865 - -2.7 950,890 + -0.0 950,890 + -0.0 950,890 + -1.0 950,891 - -0.0 950,891 - -1.3 950,891 - -0.2 950,891 - -0.0 950,891 - -0.7 950,894 + -0.0 950,894 + -2.5 950,894 + -0.0 950,894 + -0.0 950,895 - -0.8 950,895 - -0.0 950,895 - -0.0 950,895 - +0.3 950,895 - -1.0 950,915 - -0.0 950,927 - -0.0 950,927 - -3.3 950,927 - -2.0 950,927 - -1.4 951,106 + Pf1N1B4_829 0.31 -0.0 951,107 - Pf1N1B4_829 0.31 -0.0 951,265 + Pf1N1B4_829 0.50 -0.0 951,265 + Pf1N1B4_829 0.50 -2.4 951,266 - Pf1N1B4_829 0.50 -0.0 951,266 - Pf1N1B4_829 0.50 -0.0 951,266 - Pf1N1B4_829 0.50 -0.0 951,292 + Pf1N1B4_829 0.54 -3.8 951,292 + Pf1N1B4_829 0.54 -0.0 951,292 + Pf1N1B4_829 0.54 -0.0 951,292 + -0.0 951,293 - Pf1N1B4_829 0.54 -0.0 951,293 - Pf1N1B4_829 0.54 -0.0 951,293 - Pf1N1B4_829 0.54 -1.5 951,293 - Pf1N1B4_829 0.54 -0.0 951,293 - Pf1N1B4_829 0.54 -0.0 951,293 - Pf1N1B4_829 0.54 -0.0 951,293 - Pf1N1B4_829 0.54 -0.0 951,391 + Pf1N1B4_829 0.65 -0.0 951,452 + -0.0 951,452 + Pf1N1B4_829 0.73 -0.0 951,452 + Pf1N1B4_829 0.73 -0.0 951,452 + -0.0 951,452 + Pf1N1B4_829 0.73 -0.2 951,452 + Pf1N1B4_829 0.73 -2.4 951,453 - Pf1N1B4_829 0.73 -1.6 951,554 + Pf1N1B4_829 0.85 -2.0 951,554 + Pf1N1B4_829 0.85 -1.3 951,554 + Pf1N1B4_829 0.85 -0.0 951,555 - Pf1N1B4_829 0.85 -0.0 951,555 - Pf1N1B4_829 0.85 -4.6 951,555 - Pf1N1B4_829 0.85 -3.5 951,605 - -3.5 951,605 - -2.3 951,729 - Pf1N1B4_830 0.17 -0.0 951,973 + -0.6 951,973 + -0.0 951,973 + -0.0 951,973 + -0.0 951,973 + -0.0 951,974 - -0.2 951,974 - +0.1 951,974 - -0.0 951,974 - -0.0 951,974 - -0.0 951,974 - -0.0 951,974 - -1.3 952,061 + -0.0 952,062 - -0.0 952,062 - -0.0 952,062 - -0.0 952,062 - -0.0 952,084 - -0.0 952,084 - -1.3 952,139 + -0.8 952,140 - -0.0 952,268 + -0.0 952,268 + -0.0 952,268 + -0.0 952,268 + -0.0 952,285 + -0.0 952,285 + -2.1 952,286 - -0.0 952,340 - -2.4 952,340 - -1.3 952,419 + -0.0 952,419 + -0.0 952,419 + -0.0 952,419 + -0.0 952,420 - -0.0 952,420 - -0.0 952,439 - -1.6 952,453 + -4.8 952,453 + -0.0 952,453 + -0.0 952,454 - -0.0 952,466 - -2.6 952,466 - -0.2 952,466 - -0.0 952,476 + -0.0 952,477 - -0.1 952,610 - Pf1N1B4_831 0.40 -0.0
Or see this region's nucleotide sequence