Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_778

Experiment: Nitrate reduction

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_776 and Pf1N1B4_777 overlap by 1 nucleotidesPf1N1B4_777 and Pf1N1B4_778 are separated by 118 nucleotidesPf1N1B4_778 and Pf1N1B4_779 are separated by 14 nucleotides Pf1N1B4_776 - Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake, at 880,987 to 882,315 _776 Pf1N1B4_777 - Membrane protein glpM, at 882,315 to 882,653 _777 Pf1N1B4_778 - hypothetical protein, at 882,772 to 883,662 _778 Pf1N1B4_779 - hypothetical protein, at 883,677 to 884,372 _779 Position (kb) 882 883 884Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 881.782 kb on - strand, within Pf1N1B4_776at 881.782 kb on - strand, within Pf1N1B4_776at 881.896 kb on + strand, within Pf1N1B4_776at 881.897 kb on - strand, within Pf1N1B4_776at 881.897 kb on - strand, within Pf1N1B4_776at 881.897 kb on - strand, within Pf1N1B4_776at 881.897 kb on - strand, within Pf1N1B4_776at 881.897 kb on - strand, within Pf1N1B4_776at 881.915 kb on + strand, within Pf1N1B4_776at 882.298 kb on + strandat 882.299 kb on - strandat 882.355 kb on + strand, within Pf1N1B4_777at 882.390 kb on + strand, within Pf1N1B4_777at 882.391 kb on - strand, within Pf1N1B4_777at 882.391 kb on - strand, within Pf1N1B4_777at 882.391 kb on - strand, within Pf1N1B4_777at 882.393 kb on + strand, within Pf1N1B4_777at 882.393 kb on + strand, within Pf1N1B4_777at 882.444 kb on + strand, within Pf1N1B4_777at 882.444 kb on + strand, within Pf1N1B4_777at 882.444 kb on + strand, within Pf1N1B4_777at 882.444 kb on + strand, within Pf1N1B4_777at 882.444 kb on + strand, within Pf1N1B4_777at 882.444 kb on + strand, within Pf1N1B4_777at 882.444 kb on + strand, within Pf1N1B4_777at 882.444 kb on + strand, within Pf1N1B4_777at 882.444 kb on + strand, within Pf1N1B4_777at 882.444 kb on + strand, within Pf1N1B4_777at 882.444 kb on + strand, within Pf1N1B4_777at 882.445 kb on - strand, within Pf1N1B4_777at 882.445 kb on - strand, within Pf1N1B4_777at 882.445 kb on - strand, within Pf1N1B4_777at 882.445 kb on - strand, within Pf1N1B4_777at 882.445 kb on - strand, within Pf1N1B4_777at 882.519 kb on + strand, within Pf1N1B4_777at 882.519 kb on + strand, within Pf1N1B4_777at 882.519 kb on + strand, within Pf1N1B4_777at 882.519 kb on + strand, within Pf1N1B4_777at 882.519 kb on + strand, within Pf1N1B4_777at 882.529 kb on - strand, within Pf1N1B4_777at 882.543 kb on + strand, within Pf1N1B4_777at 882.543 kb on + strand, within Pf1N1B4_777at 882.543 kb on + strand, within Pf1N1B4_777at 882.543 kb on + strand, within Pf1N1B4_777at 882.543 kb on + strand, within Pf1N1B4_777at 882.543 kb on + strand, within Pf1N1B4_777at 882.543 kb on + strand, within Pf1N1B4_777at 882.543 kb on + strand, within Pf1N1B4_777at 882.543 kb on + strand, within Pf1N1B4_777at 882.544 kb on - strand, within Pf1N1B4_777at 882.544 kb on - strand, within Pf1N1B4_777at 882.544 kb on - strand, within Pf1N1B4_777at 882.544 kb on - strandat 882.544 kb on - strand, within Pf1N1B4_777at 882.544 kb on - strand, within Pf1N1B4_777at 882.544 kb on - strand, within Pf1N1B4_777at 882.544 kb on - strand, within Pf1N1B4_777at 882.544 kb on - strand, within Pf1N1B4_777at 882.544 kb on - strand, within Pf1N1B4_777at 882.745 kb on - strandat 882.752 kb on + strandat 882.752 kb on + strandat 882.753 kb on - strandat 882.872 kb on + strand, within Pf1N1B4_778at 882.872 kb on + strand, within Pf1N1B4_778at 882.872 kb on + strand, within Pf1N1B4_778at 882.872 kb on + strand, within Pf1N1B4_778at 882.873 kb on - strandat 882.873 kb on - strand, within Pf1N1B4_778at 882.873 kb on - strand, within Pf1N1B4_778at 882.873 kb on - strand, within Pf1N1B4_778at 882.873 kb on - strand, within Pf1N1B4_778at 882.873 kb on - strand, within Pf1N1B4_778at 882.873 kb on - strand, within Pf1N1B4_778at 882.876 kb on + strand, within Pf1N1B4_778at 882.932 kb on + strand, within Pf1N1B4_778at 882.932 kb on + strand, within Pf1N1B4_778at 882.932 kb on + strand, within Pf1N1B4_778at 882.932 kb on + strand, within Pf1N1B4_778at 882.932 kb on + strand, within Pf1N1B4_778at 882.933 kb on - strand, within Pf1N1B4_778at 883.210 kb on + strandat 883.462 kb on - strand, within Pf1N1B4_778at 883.462 kb on - strand, within Pf1N1B4_778at 883.462 kb on - strand, within Pf1N1B4_778at 883.571 kb on + strand, within Pf1N1B4_778at 883.571 kb on + strandat 883.571 kb on + strand, within Pf1N1B4_778at 883.572 kb on - strand, within Pf1N1B4_778at 883.729 kb on + strandat 883.730 kb on - strandat 883.753 kb on + strand, within Pf1N1B4_779at 883.753 kb on + strand, within Pf1N1B4_779at 883.753 kb on + strand, within Pf1N1B4_779at 883.754 kb on - strand, within Pf1N1B4_779at 883.754 kb on - strand, within Pf1N1B4_779at 883.754 kb on - strand, within Pf1N1B4_779at 883.754 kb on - strandat 883.754 kb on - strandat 883.754 kb on - strand, within Pf1N1B4_779at 883.894 kb on + strand, within Pf1N1B4_779at 883.894 kb on + strand, within Pf1N1B4_779at 883.894 kb on + strand, within Pf1N1B4_779at 883.894 kb on + strand, within Pf1N1B4_779at 883.895 kb on - strand, within Pf1N1B4_779at 883.895 kb on - strand, within Pf1N1B4_779at 883.895 kb on - strand, within Pf1N1B4_779at 883.895 kb on - strand, within Pf1N1B4_779at 883.990 kb on + strand, within Pf1N1B4_779at 883.990 kb on + strand, within Pf1N1B4_779at 883.990 kb on + strand, within Pf1N1B4_779at 883.990 kb on + strand, within Pf1N1B4_779at 883.990 kb on + strand, within Pf1N1B4_779at 883.990 kb on + strand, within Pf1N1B4_779at 883.991 kb on - strand, within Pf1N1B4_779at 883.991 kb on - strand, within Pf1N1B4_779at 883.991 kb on - strand, within Pf1N1B4_779at 883.991 kb on - strand, within Pf1N1B4_779at 883.991 kb on - strand, within Pf1N1B4_779at 883.991 kb on - strand, within Pf1N1B4_779at 884.015 kb on + strand, within Pf1N1B4_779at 884.015 kb on + strand, within Pf1N1B4_779at 884.016 kb on - strand, within Pf1N1B4_779at 884.017 kb on + strandat 884.017 kb on + strand, within Pf1N1B4_779at 884.017 kb on + strand, within Pf1N1B4_779at 884.017 kb on + strand, within Pf1N1B4_779at 884.017 kb on + strand, within Pf1N1B4_779at 884.017 kb on + strand, within Pf1N1B4_779at 884.017 kb on + strand, within Pf1N1B4_779at 884.017 kb on + strand, within Pf1N1B4_779at 884.017 kb on + strand, within Pf1N1B4_779at 884.017 kb on + strand, within Pf1N1B4_779at 884.018 kb on - strand, within Pf1N1B4_779at 884.018 kb on - strand, within Pf1N1B4_779at 884.018 kb on - strand, within Pf1N1B4_779at 884.018 kb on - strand, within Pf1N1B4_779at 884.018 kb on - strand, within Pf1N1B4_779at 884.018 kb on - strand, within Pf1N1B4_779at 884.018 kb on - strand, within Pf1N1B4_779at 884.018 kb on - strand, within Pf1N1B4_779at 884.018 kb on - strand, within Pf1N1B4_779at 884.018 kb on - strand, within Pf1N1B4_779at 884.018 kb on - strand, within Pf1N1B4_779at 884.018 kb on - strand, within Pf1N1B4_779at 884.018 kb on - strand, within Pf1N1B4_779at 884.018 kb on - strand, within Pf1N1B4_779at 884.018 kb on - strand, within Pf1N1B4_779at 884.059 kb on + strand, within Pf1N1B4_779at 884.060 kb on - strand, within Pf1N1B4_779at 884.162 kb on + strand, within Pf1N1B4_779at 884.355 kb on + strandat 884.355 kb on + strandat 884.355 kb on + strandat 884.385 kb on + strandat 884.386 kb on - strandat 884.386 kb on - strandat 884.391 kb on + strandat 884.391 kb on + strandat 884.391 kb on + strandat 884.391 kb on + strandat 884.391 kb on + strandat 884.392 kb on - strandat 884.392 kb on - strandat 884.392 kb on - strandat 884.392 kb on - strandat 884.392 kb on - strandat 884.392 kb on - strandat 884.392 kb on - strandat 884.394 kb on + strandat 884.407 kb on + strandat 884.407 kb on + strandat 884.407 kb on + strandat 884.407 kb on + strandat 884.407 kb on + strandat 884.407 kb on + strandat 884.408 kb on - strandat 884.408 kb on - strandat 884.408 kb on - strandat 884.408 kb on - strandat 884.408 kb on - strandat 884.408 kb on - strandat 884.408 kb on - strandat 884.408 kb on - strandat 884.408 kb on - strandat 884.408 kb on - strandat 884.408 kb on - strandat 884.408 kb on - strandat 884.408 kb on - strandat 884.408 kb on - strandat 884.408 kb on - strandat 884.408 kb on - strandat 884.408 kb on - strandat 884.408 kb on - strandat 884.488 kb on + strandat 884.488 kb on + strandat 884.489 kb on - strandat 884.515 kb on + strandat 884.515 kb on + strandat 884.515 kb on + strandat 884.515 kb on + strandat 884.515 kb on + strandat 884.515 kb on + strandat 884.516 kb on - strandat 884.516 kb on - strandat 884.516 kb on - strandat 884.652 kb on + strandat 884.662 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction
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881,782 - Pf1N1B4_776 0.60 -0.0
881,782 - Pf1N1B4_776 0.60 -1.0
881,896 + Pf1N1B4_776 0.68 -0.0
881,897 - Pf1N1B4_776 0.68 -1.0
881,897 - Pf1N1B4_776 0.68 -0.0
881,897 - Pf1N1B4_776 0.68 -0.0
881,897 - Pf1N1B4_776 0.68 -0.0
881,897 - Pf1N1B4_776 0.68 -0.0
881,915 + Pf1N1B4_776 0.70 -2.6
882,298 + -0.0
882,299 - -5.3
882,355 + Pf1N1B4_777 0.12 -2.8
882,390 + Pf1N1B4_777 0.22 -0.1
882,391 - Pf1N1B4_777 0.22 -2.9
882,391 - Pf1N1B4_777 0.22 -0.0
882,391 - Pf1N1B4_777 0.22 -3.6
882,393 + Pf1N1B4_777 0.23 -0.0
882,393 + Pf1N1B4_777 0.23 -0.0
882,444 + Pf1N1B4_777 0.38 -0.6
882,444 + Pf1N1B4_777 0.38 -2.0
882,444 + Pf1N1B4_777 0.38 -0.0
882,444 + Pf1N1B4_777 0.38 -1.3
882,444 + Pf1N1B4_777 0.38 -0.0
882,444 + Pf1N1B4_777 0.38 -0.0
882,444 + Pf1N1B4_777 0.38 -0.0
882,444 + Pf1N1B4_777 0.38 -0.0
882,444 + Pf1N1B4_777 0.38 -2.8
882,444 + Pf1N1B4_777 0.38 -3.0
882,444 + Pf1N1B4_777 0.38 -1.3
882,445 - Pf1N1B4_777 0.38 -0.0
882,445 - Pf1N1B4_777 0.38 -0.0
882,445 - Pf1N1B4_777 0.38 -0.0
882,445 - Pf1N1B4_777 0.38 -0.0
882,445 - Pf1N1B4_777 0.38 -0.0
882,519 + Pf1N1B4_777 0.60 -0.0
882,519 + Pf1N1B4_777 0.60 -4.2
882,519 + Pf1N1B4_777 0.60 -0.0
882,519 + Pf1N1B4_777 0.60 -0.0
882,519 + Pf1N1B4_777 0.60 -0.0
882,529 - Pf1N1B4_777 0.63 -0.0
882,543 + Pf1N1B4_777 0.67 -0.0
882,543 + Pf1N1B4_777 0.67 -0.0
882,543 + Pf1N1B4_777 0.67 -2.1
882,543 + Pf1N1B4_777 0.67 -0.0
882,543 + Pf1N1B4_777 0.67 -0.0
882,543 + Pf1N1B4_777 0.67 -4.9
882,543 + Pf1N1B4_777 0.67 -3.9
882,543 + Pf1N1B4_777 0.67 -0.0
882,543 + Pf1N1B4_777 0.67 -7.0
882,544 - Pf1N1B4_777 0.68 -3.5
882,544 - Pf1N1B4_777 0.68 -0.0
882,544 - Pf1N1B4_777 0.68 -0.0
882,544 - -0.0
882,544 - Pf1N1B4_777 0.68 -0.0
882,544 - Pf1N1B4_777 0.68 -0.0
882,544 - Pf1N1B4_777 0.68 -0.0
882,544 - Pf1N1B4_777 0.68 -0.0
882,544 - Pf1N1B4_777 0.68 -3.3
882,544 - Pf1N1B4_777 0.68 -0.0
882,745 - -1.9
882,752 + -1.6
882,752 + -0.6
882,753 - -0.0
882,872 + Pf1N1B4_778 0.11 -0.0
882,872 + Pf1N1B4_778 0.11 -0.0
882,872 + Pf1N1B4_778 0.11 -0.0
882,872 + Pf1N1B4_778 0.11 -0.0
882,873 - -1.1
882,873 - Pf1N1B4_778 0.11 -0.0
882,873 - Pf1N1B4_778 0.11 -0.0
882,873 - Pf1N1B4_778 0.11 -2.7
882,873 - Pf1N1B4_778 0.11 -0.0
882,873 - Pf1N1B4_778 0.11 -0.0
882,873 - Pf1N1B4_778 0.11 -2.0
882,876 + Pf1N1B4_778 0.12 -0.0
882,932 + Pf1N1B4_778 0.18 -0.0
882,932 + Pf1N1B4_778 0.18 -3.9
882,932 + Pf1N1B4_778 0.18 -0.0
882,932 + Pf1N1B4_778 0.18 -0.0
882,932 + Pf1N1B4_778 0.18 -0.0
882,933 - Pf1N1B4_778 0.18 -0.0
883,210 + -3.3
883,462 - Pf1N1B4_778 0.77 -0.0
883,462 - Pf1N1B4_778 0.77 -0.0
883,462 - Pf1N1B4_778 0.77 -0.0
883,571 + Pf1N1B4_778 0.90 -1.8
883,571 + -0.0
883,571 + Pf1N1B4_778 0.90 -4.6
883,572 - Pf1N1B4_778 0.90 -2.6
883,729 + -0.0
883,730 - -1.0
883,753 + Pf1N1B4_779 0.11 -1.9
883,753 + Pf1N1B4_779 0.11 -0.5
883,753 + Pf1N1B4_779 0.11 -0.0
883,754 - Pf1N1B4_779 0.11 -1.9
883,754 - Pf1N1B4_779 0.11 -0.0
883,754 - Pf1N1B4_779 0.11 -0.0
883,754 - -3.0
883,754 - -1.8
883,754 - Pf1N1B4_779 0.11 -0.0
883,894 + Pf1N1B4_779 0.31 -1.3
883,894 + Pf1N1B4_779 0.31 -0.0
883,894 + Pf1N1B4_779 0.31 -2.1
883,894 + Pf1N1B4_779 0.31 -0.0
883,895 - Pf1N1B4_779 0.31 -0.9
883,895 - Pf1N1B4_779 0.31 -0.0
883,895 - Pf1N1B4_779 0.31 -0.5
883,895 - Pf1N1B4_779 0.31 -0.0
883,990 + Pf1N1B4_779 0.45 -0.0
883,990 + Pf1N1B4_779 0.45 -1.7
883,990 + Pf1N1B4_779 0.45 -1.6
883,990 + Pf1N1B4_779 0.45 -0.0
883,990 + Pf1N1B4_779 0.45 -1.3
883,990 + Pf1N1B4_779 0.45 -0.0
883,991 - Pf1N1B4_779 0.45 -0.0
883,991 - Pf1N1B4_779 0.45 -0.0
883,991 - Pf1N1B4_779 0.45 -2.9
883,991 - Pf1N1B4_779 0.45 -1.7
883,991 - Pf1N1B4_779 0.45 -0.0
883,991 - Pf1N1B4_779 0.45 -0.0
884,015 + Pf1N1B4_779 0.49 -0.0
884,015 + Pf1N1B4_779 0.49 -0.0
884,016 - Pf1N1B4_779 0.49 -0.0
884,017 + -0.0
884,017 + Pf1N1B4_779 0.49 -0.0
884,017 + Pf1N1B4_779 0.49 -0.7
884,017 + Pf1N1B4_779 0.49 -0.0
884,017 + Pf1N1B4_779 0.49 -2.5
884,017 + Pf1N1B4_779 0.49 -4.8
884,017 + Pf1N1B4_779 0.49 -1.5
884,017 + Pf1N1B4_779 0.49 -0.0
884,017 + Pf1N1B4_779 0.49 -0.0
884,017 + Pf1N1B4_779 0.49 -0.0
884,018 - Pf1N1B4_779 0.49 -0.0
884,018 - Pf1N1B4_779 0.49 -0.0
884,018 - Pf1N1B4_779 0.49 -0.0
884,018 - Pf1N1B4_779 0.49 -2.2
884,018 - Pf1N1B4_779 0.49 -0.9
884,018 - Pf1N1B4_779 0.49 -0.0
884,018 - Pf1N1B4_779 0.49 -0.9
884,018 - Pf1N1B4_779 0.49 -0.0
884,018 - Pf1N1B4_779 0.49 -3.7
884,018 - Pf1N1B4_779 0.49 -0.0
884,018 - Pf1N1B4_779 0.49 -0.0
884,018 - Pf1N1B4_779 0.49 -2.0
884,018 - Pf1N1B4_779 0.49 -0.0
884,018 - Pf1N1B4_779 0.49 -0.0
884,018 - Pf1N1B4_779 0.49 -0.0
884,059 + Pf1N1B4_779 0.55 -0.7
884,060 - Pf1N1B4_779 0.55 -2.3
884,162 + Pf1N1B4_779 0.70 -2.3
884,355 + -0.0
884,355 + -1.2
884,355 + -0.0
884,385 + -1.0
884,386 - -0.0
884,386 - -0.0
884,391 + -0.0
884,391 + -0.0
884,391 + -0.1
884,391 + -0.0
884,391 + -1.7
884,392 - +0.3
884,392 - -4.3
884,392 - -0.0
884,392 - -0.0
884,392 - -0.0
884,392 - -0.0
884,392 - -0.0
884,394 + -0.0
884,407 + -0.0
884,407 + -0.0
884,407 + -0.0
884,407 + -0.0
884,407 + -1.9
884,407 + -0.0
884,408 - -0.7
884,408 - -0.0
884,408 - -1.3
884,408 - -0.0
884,408 - -0.0
884,408 - -0.0
884,408 - -0.0
884,408 - -2.2
884,408 - -2.4
884,408 - -1.0
884,408 - -0.0
884,408 - -0.0
884,408 - -0.0
884,408 - -0.7
884,408 - -1.4
884,408 - -1.4
884,408 - -0.0
884,408 - +0.3
884,488 + -0.0
884,488 + -0.0
884,489 - -0.0
884,515 + -1.3
884,515 + -0.0
884,515 + -0.0
884,515 + -0.0
884,515 + -2.1
884,515 + -0.0
884,516 - -0.0
884,516 - -0.0
884,516 - -0.0
884,652 + -2.3
884,662 + -1.6

Or see this region's nucleotide sequence