Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_760

Experiment: Nitrate reduction

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_758 and Pf1N1B4_759 are separated by 197 nucleotidesPf1N1B4_759 and Pf1N1B4_760 are separated by 97 nucleotidesPf1N1B4_760 and Pf1N1B4_761 are separated by 134 nucleotidesPf1N1B4_761 and Pf1N1B4_762 are separated by 403 nucleotides Pf1N1B4_758 - Bacterioferritin, at 862,129 to 862,602 _758 Pf1N1B4_759 - Glutaredoxin-related protein, at 862,800 to 863,141 _759 Pf1N1B4_760 - Formate dehydrogenase-O, major subunit (EC 1.2.1.2), at 863,239 to 865,344 _760 Pf1N1B4_761 - FIG00954879: hypothetical protein, at 865,479 to 865,769 _761 Pf1N1B4_762 - Ornithine carbamoyltransferase (EC 2.1.3.3), at 866,173 to 867,096 _762 Position (kb) 863 864 865 866Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 862.261 kb on + strand, within Pf1N1B4_758at 862.573 kb on + strandat 862.573 kb on + strandat 862.574 kb on - strandat 862.574 kb on - strandat 862.574 kb on - strandat 862.600 kb on + strandat 862.600 kb on + strandat 862.601 kb on - strandat 862.607 kb on + strandat 862.629 kb on + strandat 862.630 kb on - strandat 862.649 kb on + strandat 862.650 kb on - strandat 862.651 kb on + strandat 862.667 kb on + strandat 862.730 kb on + strandat 862.744 kb on + strandat 862.744 kb on + strandat 862.744 kb on + strandat 862.744 kb on + strandat 862.744 kb on + strandat 862.744 kb on + strandat 862.745 kb on - strandat 862.745 kb on - strandat 862.745 kb on - strandat 862.952 kb on - strand, within Pf1N1B4_759at 863.000 kb on - strand, within Pf1N1B4_759at 863.086 kb on + strand, within Pf1N1B4_759at 863.087 kb on - strand, within Pf1N1B4_759at 863.194 kb on + strandat 863.194 kb on + strandat 863.567 kb on + strand, within Pf1N1B4_760at 863.567 kb on + strand, within Pf1N1B4_760at 863.568 kb on - strandat 863.568 kb on - strand, within Pf1N1B4_760at 863.568 kb on - strand, within Pf1N1B4_760at 863.568 kb on - strand, within Pf1N1B4_760at 863.568 kb on - strand, within Pf1N1B4_760at 863.644 kb on + strand, within Pf1N1B4_760at 863.645 kb on - strand, within Pf1N1B4_760at 863.645 kb on - strand, within Pf1N1B4_760at 863.816 kb on + strand, within Pf1N1B4_760at 863.871 kb on + strand, within Pf1N1B4_760at 864.018 kb on - strand, within Pf1N1B4_760at 864.018 kb on - strand, within Pf1N1B4_760at 864.018 kb on - strand, within Pf1N1B4_760at 864.018 kb on - strand, within Pf1N1B4_760at 864.065 kb on + strandat 864.086 kb on + strand, within Pf1N1B4_760at 864.086 kb on + strand, within Pf1N1B4_760at 864.086 kb on + strand, within Pf1N1B4_760at 864.087 kb on - strandat 864.087 kb on - strand, within Pf1N1B4_760at 864.087 kb on - strand, within Pf1N1B4_760at 864.087 kb on - strand, within Pf1N1B4_760at 864.087 kb on - strand, within Pf1N1B4_760at 864.087 kb on - strand, within Pf1N1B4_760at 864.087 kb on - strand, within Pf1N1B4_760at 864.087 kb on - strand, within Pf1N1B4_760at 864.453 kb on - strand, within Pf1N1B4_760at 864.630 kb on + strand, within Pf1N1B4_760at 864.630 kb on + strand, within Pf1N1B4_760at 864.630 kb on + strand, within Pf1N1B4_760at 864.631 kb on - strand, within Pf1N1B4_760at 864.887 kb on + strand, within Pf1N1B4_760at 864.887 kb on + strand, within Pf1N1B4_760at 864.887 kb on + strand, within Pf1N1B4_760at 864.887 kb on + strand, within Pf1N1B4_760at 864.887 kb on + strand, within Pf1N1B4_760at 864.887 kb on + strand, within Pf1N1B4_760at 864.887 kb on + strand, within Pf1N1B4_760at 864.887 kb on + strand, within Pf1N1B4_760at 864.887 kb on + strand, within Pf1N1B4_760at 864.888 kb on - strand, within Pf1N1B4_760at 864.888 kb on - strandat 864.888 kb on - strand, within Pf1N1B4_760at 864.888 kb on - strand, within Pf1N1B4_760at 864.888 kb on - strand, within Pf1N1B4_760at 864.974 kb on + strand, within Pf1N1B4_760at 864.974 kb on + strand, within Pf1N1B4_760at 864.975 kb on - strand, within Pf1N1B4_760at 864.975 kb on - strandat 864.998 kb on + strand, within Pf1N1B4_760at 864.998 kb on + strand, within Pf1N1B4_760at 864.999 kb on - strand, within Pf1N1B4_760at 865.026 kb on - strand, within Pf1N1B4_760at 865.110 kb on + strand, within Pf1N1B4_760at 865.111 kb on - strand, within Pf1N1B4_760at 865.255 kb on + strandat 865.398 kb on - strandat 865.398 kb on - strandat 865.398 kb on - strandat 865.398 kb on - strandat 865.727 kb on + strandat 865.728 kb on - strand, within Pf1N1B4_761at 865.738 kb on - strand, within Pf1N1B4_761at 865.738 kb on - strand, within Pf1N1B4_761at 865.738 kb on - strand, within Pf1N1B4_761at 865.738 kb on - strand, within Pf1N1B4_761at 865.747 kb on - strandat 865.801 kb on - strandat 865.801 kb on - strandat 865.801 kb on - strandat 865.801 kb on - strandat 865.801 kb on - strandat 865.801 kb on - strandat 865.804 kb on + strandat 865.804 kb on + strandat 865.805 kb on - strandat 865.805 kb on - strandat 865.805 kb on - strandat 865.805 kb on - strandat 865.941 kb on + strandat 865.941 kb on + strandat 865.941 kb on + strandat 865.942 kb on - strandat 865.951 kb on + strandat 866.052 kb on + strandat 866.098 kb on + strandat 866.128 kb on - strandat 866.143 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction
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862,261 + Pf1N1B4_758 0.28 -0.0
862,573 + -0.0
862,573 + -0.0
862,574 - -0.2
862,574 - -0.2
862,574 - -0.0
862,600 + -4.7
862,600 + -0.0
862,601 - -0.0
862,607 + -3.6
862,629 + -0.0
862,630 - -0.0
862,649 + -0.0
862,650 - -0.0
862,651 + -0.0
862,667 + -0.0
862,730 + -1.2
862,744 + -2.0
862,744 + -0.0
862,744 + -0.0
862,744 + -0.9
862,744 + -2.8
862,744 + -0.0
862,745 - -5.3
862,745 - -1.2
862,745 - -3.5
862,952 - Pf1N1B4_759 0.44 -3.6
863,000 - Pf1N1B4_759 0.58 -2.3
863,086 + Pf1N1B4_759 0.84 -0.0
863,087 - Pf1N1B4_759 0.84 -0.0
863,194 + -0.0
863,194 + -0.0
863,567 + Pf1N1B4_760 0.16 -0.0
863,567 + Pf1N1B4_760 0.16 -0.0
863,568 - -1.0
863,568 - Pf1N1B4_760 0.16 -0.0
863,568 - Pf1N1B4_760 0.16 -2.3
863,568 - Pf1N1B4_760 0.16 -0.0
863,568 - Pf1N1B4_760 0.16 -1.2
863,644 + Pf1N1B4_760 0.19 -0.0
863,645 - Pf1N1B4_760 0.19 -0.9
863,645 - Pf1N1B4_760 0.19 -0.0
863,816 + Pf1N1B4_760 0.27 -0.0
863,871 + Pf1N1B4_760 0.30 -0.3
864,018 - Pf1N1B4_760 0.37 -0.0
864,018 - Pf1N1B4_760 0.37 -0.0
864,018 - Pf1N1B4_760 0.37 -0.0
864,018 - Pf1N1B4_760 0.37 -0.0
864,065 + -0.0
864,086 + Pf1N1B4_760 0.40 -1.1
864,086 + Pf1N1B4_760 0.40 -0.0
864,086 + Pf1N1B4_760 0.40 -2.4
864,087 - -2.0
864,087 - Pf1N1B4_760 0.40 -0.0
864,087 - Pf1N1B4_760 0.40 -0.0
864,087 - Pf1N1B4_760 0.40 -2.8
864,087 - Pf1N1B4_760 0.40 -0.0
864,087 - Pf1N1B4_760 0.40 -0.0
864,087 - Pf1N1B4_760 0.40 -3.3
864,087 - Pf1N1B4_760 0.40 -0.0
864,453 - Pf1N1B4_760 0.58 -3.9
864,630 + Pf1N1B4_760 0.66 -0.0
864,630 + Pf1N1B4_760 0.66 -0.0
864,630 + Pf1N1B4_760 0.66 -0.0
864,631 - Pf1N1B4_760 0.66 -4.7
864,887 + Pf1N1B4_760 0.78 -0.7
864,887 + Pf1N1B4_760 0.78 -0.0
864,887 + Pf1N1B4_760 0.78 -6.6
864,887 + Pf1N1B4_760 0.78 -3.0
864,887 + Pf1N1B4_760 0.78 -0.0
864,887 + Pf1N1B4_760 0.78 -1.6
864,887 + Pf1N1B4_760 0.78 -0.0
864,887 + Pf1N1B4_760 0.78 -0.0
864,887 + Pf1N1B4_760 0.78 -0.0
864,888 - Pf1N1B4_760 0.78 -0.0
864,888 - -0.0
864,888 - Pf1N1B4_760 0.78 -2.4
864,888 - Pf1N1B4_760 0.78 -1.0
864,888 - Pf1N1B4_760 0.78 -0.0
864,974 + Pf1N1B4_760 0.82 -4.3
864,974 + Pf1N1B4_760 0.82 -0.0
864,975 - Pf1N1B4_760 0.82 -0.0
864,975 - -0.0
864,998 + Pf1N1B4_760 0.84 -0.0
864,998 + Pf1N1B4_760 0.84 -0.0
864,999 - Pf1N1B4_760 0.84 -0.0
865,026 - Pf1N1B4_760 0.85 -0.0
865,110 + Pf1N1B4_760 0.89 -0.0
865,111 - Pf1N1B4_760 0.89 -0.0
865,255 + -0.0
865,398 - -0.0
865,398 - -4.2
865,398 - -4.6
865,398 - -0.0
865,727 + -0.0
865,728 - Pf1N1B4_761 0.86 -0.0
865,738 - Pf1N1B4_761 0.89 -0.0
865,738 - Pf1N1B4_761 0.89 -1.4
865,738 - Pf1N1B4_761 0.89 -0.1
865,738 - Pf1N1B4_761 0.89 -0.5
865,747 - -0.0
865,801 - -0.0
865,801 - -3.9
865,801 - -0.2
865,801 - -0.4
865,801 - -0.0
865,801 - -0.0
865,804 + -0.0
865,804 + -0.0
865,805 - -0.0
865,805 - -1.2
865,805 - -0.0
865,805 - -1.8
865,941 + -1.5
865,941 + -2.0
865,941 + -0.0
865,942 - -0.0
865,951 + -0.0
866,052 + -0.0
866,098 + -0.0
866,128 - -0.0
866,143 + -0.0

Or see this region's nucleotide sequence