Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3719

Experiment: Nitrate reduction

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3717 and Pf1N1B4_3718 overlap by 4 nucleotidesPf1N1B4_3718 and Pf1N1B4_3719 are separated by 56 nucleotidesPf1N1B4_3719 and Pf1N1B4_3720 are separated by 83 nucleotides Pf1N1B4_3717 - Permeases of the major facilitator superfamily, at 4,124,721 to 4,125,929 _3717 Pf1N1B4_3718 - hypothetical protein, at 4,125,926 to 4,126,048 _3718 Pf1N1B4_3719 - Glutathione peroxidase family protein, at 4,126,105 to 4,126,656 _3719 Pf1N1B4_3720 - Long-chain fatty acid transport protein, at 4,126,740 to 4,128,008 _3720 Position (kb) 4126 4127Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4125.429 kb on + strand, within Pf1N1B4_3717at 4125.567 kb on + strand, within Pf1N1B4_3717at 4125.567 kb on + strand, within Pf1N1B4_3717at 4125.567 kb on + strand, within Pf1N1B4_3717at 4125.567 kb on + strand, within Pf1N1B4_3717at 4125.568 kb on - strand, within Pf1N1B4_3717at 4125.630 kb on + strand, within Pf1N1B4_3717at 4125.631 kb on - strand, within Pf1N1B4_3717at 4125.798 kb on + strand, within Pf1N1B4_3717at 4125.798 kb on + strand, within Pf1N1B4_3717at 4125.798 kb on + strand, within Pf1N1B4_3717at 4125.798 kb on + strandat 4125.798 kb on + strand, within Pf1N1B4_3717at 4125.799 kb on - strandat 4125.799 kb on - strand, within Pf1N1B4_3717at 4125.816 kb on + strandat 4125.817 kb on - strandat 4125.969 kb on + strand, within Pf1N1B4_3718at 4125.970 kb on - strand, within Pf1N1B4_3718at 4126.066 kb on + strandat 4126.187 kb on + strand, within Pf1N1B4_3719at 4126.187 kb on + strand, within Pf1N1B4_3719at 4126.187 kb on + strand, within Pf1N1B4_3719at 4126.188 kb on - strand, within Pf1N1B4_3719at 4126.188 kb on - strand, within Pf1N1B4_3719at 4126.324 kb on + strand, within Pf1N1B4_3719at 4126.333 kb on + strand, within Pf1N1B4_3719at 4126.423 kb on + strand, within Pf1N1B4_3719at 4126.424 kb on - strand, within Pf1N1B4_3719at 4126.432 kb on + strand, within Pf1N1B4_3719at 4126.432 kb on + strand, within Pf1N1B4_3719at 4126.540 kb on + strand, within Pf1N1B4_3719at 4126.540 kb on + strand, within Pf1N1B4_3719at 4126.546 kb on + strand, within Pf1N1B4_3719at 4126.546 kb on + strand, within Pf1N1B4_3719at 4126.546 kb on + strand, within Pf1N1B4_3719at 4126.546 kb on + strand, within Pf1N1B4_3719at 4126.546 kb on + strandat 4126.668 kb on + strandat 4126.687 kb on - strandat 4126.750 kb on + strandat 4126.750 kb on + strandat 4126.750 kb on + strandat 4126.750 kb on + strandat 4126.750 kb on + strandat 4126.751 kb on - strandat 4126.780 kb on + strandat 4126.780 kb on + strandat 4126.780 kb on + strandat 4126.780 kb on + strandat 4126.781 kb on - strandat 4126.781 kb on - strandat 4126.781 kb on - strandat 4126.781 kb on - strandat 4126.781 kb on - strandat 4126.789 kb on + strandat 4126.790 kb on - strandat 4126.801 kb on + strandat 4126.801 kb on + strandat 4126.802 kb on - strandat 4126.802 kb on - strandat 4126.802 kb on - strandat 4126.802 kb on - strandat 4126.802 kb on - strandat 4126.802 kb on - strandat 4126.852 kb on + strandat 4126.852 kb on + strandat 4126.852 kb on + strandat 4126.852 kb on + strandat 4126.852 kb on + strandat 4126.853 kb on - strandat 4126.853 kb on - strandat 4126.858 kb on + strandat 4126.858 kb on + strandat 4126.858 kb on + strandat 4126.858 kb on + strandat 4126.859 kb on - strandat 4126.859 kb on - strandat 4126.859 kb on - strandat 4126.863 kb on + strandat 4126.863 kb on + strandat 4126.863 kb on + strandat 4126.864 kb on - strandat 4126.864 kb on - strandat 4126.864 kb on - strandat 4126.864 kb on - strandat 4126.864 kb on - strandat 4126.864 kb on - strandat 4127.162 kb on + strandat 4127.163 kb on - strandat 4127.163 kb on - strand, within Pf1N1B4_3720at 4127.170 kb on + strand, within Pf1N1B4_3720at 4127.170 kb on + strand, within Pf1N1B4_3720at 4127.251 kb on + strand, within Pf1N1B4_3720at 4127.251 kb on + strand, within Pf1N1B4_3720at 4127.251 kb on + strand, within Pf1N1B4_3720at 4127.251 kb on + strand, within Pf1N1B4_3720at 4127.252 kb on - strand, within Pf1N1B4_3720at 4127.252 kb on - strand, within Pf1N1B4_3720at 4127.252 kb on - strand, within Pf1N1B4_3720at 4127.252 kb on - strand, within Pf1N1B4_3720at 4127.293 kb on + strand, within Pf1N1B4_3720at 4127.293 kb on + strand, within Pf1N1B4_3720at 4127.294 kb on - strand, within Pf1N1B4_3720at 4127.294 kb on - strand, within Pf1N1B4_3720at 4127.294 kb on - strandat 4127.323 kb on + strandat 4127.323 kb on + strand, within Pf1N1B4_3720at 4127.323 kb on + strand, within Pf1N1B4_3720at 4127.324 kb on - strand, within Pf1N1B4_3720at 4127.324 kb on - strand, within Pf1N1B4_3720at 4127.324 kb on - strand, within Pf1N1B4_3720at 4127.324 kb on - strand, within Pf1N1B4_3720at 4127.324 kb on - strand, within Pf1N1B4_3720at 4127.324 kb on - strand, within Pf1N1B4_3720at 4127.341 kb on + strand, within Pf1N1B4_3720at 4127.341 kb on + strand, within Pf1N1B4_3720at 4127.341 kb on + strandat 4127.396 kb on - strand, within Pf1N1B4_3720at 4127.536 kb on + strand, within Pf1N1B4_3720at 4127.536 kb on + strand, within Pf1N1B4_3720at 4127.537 kb on - strand, within Pf1N1B4_3720at 4127.537 kb on - strandat 4127.537 kb on - strand, within Pf1N1B4_3720at 4127.590 kb on + strandat 4127.590 kb on + strand, within Pf1N1B4_3720at 4127.591 kb on - strand, within Pf1N1B4_3720at 4127.591 kb on - strand, within Pf1N1B4_3720at 4127.591 kb on - strandat 4127.591 kb on - strandat 4127.615 kb on - strandat 4127.615 kb on - strandat 4127.615 kb on - strand, within Pf1N1B4_3720at 4127.642 kb on - strand, within Pf1N1B4_3720

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction
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4,125,429 + Pf1N1B4_3717 0.59 -0.1
4,125,567 + Pf1N1B4_3717 0.70 -0.1
4,125,567 + Pf1N1B4_3717 0.70 -0.1
4,125,567 + Pf1N1B4_3717 0.70 -0.5
4,125,567 + Pf1N1B4_3717 0.70 -0.1
4,125,568 - Pf1N1B4_3717 0.70 -0.1
4,125,630 + Pf1N1B4_3717 0.75 -0.1
4,125,631 - Pf1N1B4_3717 0.75 -0.2
4,125,798 + Pf1N1B4_3717 0.89 -0.1
4,125,798 + Pf1N1B4_3717 0.89 -0.1
4,125,798 + Pf1N1B4_3717 0.89 -2.4
4,125,798 + -0.1
4,125,798 + Pf1N1B4_3717 0.89 -0.1
4,125,799 - -0.9
4,125,799 - Pf1N1B4_3717 0.89 -0.1
4,125,816 + -0.1
4,125,817 - -0.1
4,125,969 + Pf1N1B4_3718 0.35 -0.1
4,125,970 - Pf1N1B4_3718 0.36 -0.1
4,126,066 + -0.1
4,126,187 + Pf1N1B4_3719 0.15 -0.1
4,126,187 + Pf1N1B4_3719 0.15 -0.1
4,126,187 + Pf1N1B4_3719 0.15 -0.1
4,126,188 - Pf1N1B4_3719 0.15 -0.1
4,126,188 - Pf1N1B4_3719 0.15 -0.1
4,126,324 + Pf1N1B4_3719 0.40 -0.1
4,126,333 + Pf1N1B4_3719 0.41 -2.9
4,126,423 + Pf1N1B4_3719 0.58 -0.1
4,126,424 - Pf1N1B4_3719 0.58 -4.0
4,126,432 + Pf1N1B4_3719 0.59 -0.1
4,126,432 + Pf1N1B4_3719 0.59 -0.1
4,126,540 + Pf1N1B4_3719 0.79 -0.1
4,126,540 + Pf1N1B4_3719 0.79 -0.1
4,126,546 + Pf1N1B4_3719 0.80 -0.1
4,126,546 + Pf1N1B4_3719 0.80 -4.0
4,126,546 + Pf1N1B4_3719 0.80 -4.0
4,126,546 + Pf1N1B4_3719 0.80 -0.1
4,126,546 + -1.2
4,126,668 + -0.2
4,126,687 - -0.1
4,126,750 + -0.4
4,126,750 + -0.1
4,126,750 + -0.1
4,126,750 + -0.1
4,126,750 + -0.1
4,126,751 - -0.3
4,126,780 + -0.1
4,126,780 + -0.1
4,126,780 + -1.4
4,126,780 + -0.1
4,126,781 - -0.1
4,126,781 - -0.1
4,126,781 - -0.1
4,126,781 - -2.4
4,126,781 - -2.5
4,126,789 + -0.3
4,126,790 - -2.1
4,126,801 + -0.1
4,126,801 + -0.1
4,126,802 - -0.6
4,126,802 - -0.1
4,126,802 - -1.4
4,126,802 - -1.9
4,126,802 - -0.1
4,126,802 - -0.1
4,126,852 + -1.4
4,126,852 + -0.1
4,126,852 + -0.1
4,126,852 + -0.1
4,126,852 + -0.1
4,126,853 - -0.3
4,126,853 - -0.1
4,126,858 + -0.1
4,126,858 + -0.1
4,126,858 + -0.1
4,126,858 + -0.1
4,126,859 - -0.1
4,126,859 - -0.1
4,126,859 - -0.1
4,126,863 + -2.1
4,126,863 + -0.1
4,126,863 + -0.1
4,126,864 - -0.1
4,126,864 - -0.5
4,126,864 - -2.0
4,126,864 - -0.1
4,126,864 - -0.1
4,126,864 - -0.1
4,127,162 + -0.1
4,127,163 - -2.0
4,127,163 - Pf1N1B4_3720 0.33 -2.1
4,127,170 + Pf1N1B4_3720 0.34 -0.1
4,127,170 + Pf1N1B4_3720 0.34 -0.1
4,127,251 + Pf1N1B4_3720 0.40 -0.1
4,127,251 + Pf1N1B4_3720 0.40 +0.6
4,127,251 + Pf1N1B4_3720 0.40 -1.9
4,127,251 + Pf1N1B4_3720 0.40 -1.2
4,127,252 - Pf1N1B4_3720 0.40 -0.1
4,127,252 - Pf1N1B4_3720 0.40 -0.1
4,127,252 - Pf1N1B4_3720 0.40 -0.1
4,127,252 - Pf1N1B4_3720 0.40 -0.1
4,127,293 + Pf1N1B4_3720 0.44 -1.3
4,127,293 + Pf1N1B4_3720 0.44 -1.7
4,127,294 - Pf1N1B4_3720 0.44 -0.1
4,127,294 - Pf1N1B4_3720 0.44 -2.4
4,127,294 - -0.1
4,127,323 + -0.1
4,127,323 + Pf1N1B4_3720 0.46 -1.0
4,127,323 + Pf1N1B4_3720 0.46 +1.2
4,127,324 - Pf1N1B4_3720 0.46 -2.2
4,127,324 - Pf1N1B4_3720 0.46 -0.1
4,127,324 - Pf1N1B4_3720 0.46 -0.7
4,127,324 - Pf1N1B4_3720 0.46 -0.1
4,127,324 - Pf1N1B4_3720 0.46 -0.1
4,127,324 - Pf1N1B4_3720 0.46 -0.1
4,127,341 + Pf1N1B4_3720 0.47 -0.1
4,127,341 + Pf1N1B4_3720 0.47 -0.1
4,127,341 + -1.9
4,127,396 - Pf1N1B4_3720 0.52 -0.1
4,127,536 + Pf1N1B4_3720 0.63 -0.1
4,127,536 + Pf1N1B4_3720 0.63 -0.1
4,127,537 - Pf1N1B4_3720 0.63 -0.1
4,127,537 - -0.1
4,127,537 - Pf1N1B4_3720 0.63 -5.5
4,127,590 + -0.8
4,127,590 + Pf1N1B4_3720 0.67 -2.4
4,127,591 - Pf1N1B4_3720 0.67 -1.2
4,127,591 - Pf1N1B4_3720 0.67 -0.1
4,127,591 - -0.1
4,127,591 - -1.7
4,127,615 - -0.1
4,127,615 - -0.5
4,127,615 - Pf1N1B4_3720 0.69 -0.4
4,127,642 - Pf1N1B4_3720 0.71 -0.1

Or see this region's nucleotide sequence