Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2990

Experiment: Nitrate reduction

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction
3,358,617	+		Pf1N1B4_2989	0.48	-0.1
3,358,617	+		Pf1N1B4_2989	0.48	-1.2
3,358,617	+		Pf1N1B4_2989	0.48	-0.1
3,358,617	+				-0.1
3,358,617	+		Pf1N1B4_2989	0.48	-2.4
3,358,617	+		Pf1N1B4_2989	0.48	-1.5
3,358,618	-		Pf1N1B4_2989	0.49	-0.1
3,358,618	-		Pf1N1B4_2989	0.49	-0.1
3,358,618	-		Pf1N1B4_2989	0.49	-0.1
3,358,618	-		Pf1N1B4_2989	0.49	-0.2
3,358,618	-		Pf1N1B4_2989	0.49	-0.1
3,358,618	-		Pf1N1B4_2989	0.49	-0.1
3,358,619	+		Pf1N1B4_2989	0.49	-0.1
3,358,619	+		Pf1N1B4_2989	0.49	-0.1
3,358,619	+		Pf1N1B4_2989	0.49	-0.1
3,358,619	+		Pf1N1B4_2989	0.49	-1.3
3,358,619	+		Pf1N1B4_2989	0.49	-1.4
3,358,619	+		Pf1N1B4_2989	0.49	-1.7
3,358,619	+		Pf1N1B4_2989	0.49	-1.0
3,358,620	-		Pf1N1B4_2989	0.49	-0.1
3,358,620	-		Pf1N1B4_2989	0.49	-0.1
3,358,620	-		Pf1N1B4_2989	0.49	-0.1
3,358,620	-		Pf1N1B4_2989	0.49	-0.1
3,358,620	-		Pf1N1B4_2989	0.49	-0.1
3,358,620	-		Pf1N1B4_2989	0.49	-2.5
3,358,620	-		Pf1N1B4_2989	0.49	-0.1
3,358,620	-		Pf1N1B4_2989	0.49	-0.9
3,358,620	-		Pf1N1B4_2989	0.49	-0.1
3,358,746	-		Pf1N1B4_2989	0.57	-0.1
3,358,760	+		Pf1N1B4_2989	0.58	-5.5
3,358,760	+		Pf1N1B4_2989	0.58	-2.0
3,358,760	+		Pf1N1B4_2989	0.58	-1.2
3,358,760	+				-2.7
3,358,760	+		Pf1N1B4_2989	0.58	-0.1
3,358,760	+		Pf1N1B4_2989	0.58	-3.2
3,358,760	+		Pf1N1B4_2989	0.58	-0.1
3,358,760	+		Pf1N1B4_2989	0.58	-0.1
3,358,760	+		Pf1N1B4_2989	0.58	-0.1
3,358,760	+		Pf1N1B4_2989	0.58	-0.1
3,358,760	+		Pf1N1B4_2989	0.58	-1.8
3,358,760	+		Pf1N1B4_2989	0.58	-0.1
3,358,761	-		Pf1N1B4_2989	0.58	-0.1
3,358,761	-		Pf1N1B4_2989	0.58	-0.1
3,358,761	-		Pf1N1B4_2989	0.58	-2.1
3,358,761	-		Pf1N1B4_2989	0.58	-0.1
3,358,761	-		Pf1N1B4_2989	0.58	-2.7
3,358,761	-		Pf1N1B4_2989	0.58	-1.3
3,358,761	-				-5.6
3,358,761	-		Pf1N1B4_2989	0.58	-0.1
3,358,761	-		Pf1N1B4_2989	0.58	-0.1
3,358,761	-		Pf1N1B4_2989	0.58	-1.4
3,358,761	-		Pf1N1B4_2989	0.58	-0.1
3,358,761	-		Pf1N1B4_2989	0.58	-0.1
3,358,761	-		Pf1N1B4_2989	0.58	-0.1
3,358,761	-		Pf1N1B4_2989	0.58	-1.9
3,358,766	+		Pf1N1B4_2989	0.58	-2.1
3,358,766	+		Pf1N1B4_2989	0.58	-1.6
3,358,766	+		Pf1N1B4_2989	0.58	-0.1
3,358,766	+		Pf1N1B4_2989	0.58	-2.2
3,358,766	+		Pf1N1B4_2989	0.58	-0.1
3,358,766	+		Pf1N1B4_2989	0.58	-1.2
3,358,766	+		Pf1N1B4_2989	0.58	-0.1
3,358,766	+		Pf1N1B4_2989	0.58	-0.1
3,358,772	+		Pf1N1B4_2989	0.58	-0.1
3,358,772	+		Pf1N1B4_2989	0.58	-0.1
3,358,773	-		Pf1N1B4_2989	0.58	-0.1
3,358,773	-		Pf1N1B4_2989	0.58	-3.9
3,358,895	+		Pf1N1B4_2989	0.66	-1.7
3,358,895	+				-2.1
3,358,896	-		Pf1N1B4_2989	0.66	-0.1
3,358,896	-		Pf1N1B4_2989	0.66	-0.1
3,358,896	-		Pf1N1B4_2989	0.66	-0.1
3,358,896	-				-3.4
3,358,896	-		Pf1N1B4_2989	0.66	-0.1
3,358,896	-		Pf1N1B4_2989	0.66	-0.1
3,358,896	-		Pf1N1B4_2989	0.66	-2.2
3,358,896	-		Pf1N1B4_2989	0.66	-0.1
3,358,896	-		Pf1N1B4_2989	0.66	-5.0
3,358,896	-		Pf1N1B4_2989	0.66	-0.1
3,358,896	-		Pf1N1B4_2989	0.66	-0.7
3,358,896	-		Pf1N1B4_2989	0.66	-0.1
3,359,405	+				-0.7
3,359,406	-				-0.1
3,359,406	-				-1.9
3,359,406	-				-0.1
3,359,533	+		Pf1N1B4_2990	0.24	-0.1
3,359,533	+		Pf1N1B4_2990	0.24	-0.1
3,359,533	+		Pf1N1B4_2990	0.24	-0.2
3,359,534	-		Pf1N1B4_2990	0.24	-1.5
3,359,534	-		Pf1N1B4_2990	0.24	-0.1
3,359,534	-		Pf1N1B4_2990	0.24	-0.1
3,359,666	+		Pf1N1B4_2990	0.52	-2.0
3,359,666	+		Pf1N1B4_2990	0.52	-0.1
3,359,701	+		Pf1N1B4_2990	0.59	-0.1
3,359,701	+		Pf1N1B4_2990	0.59	-0.1
3,359,701	+		Pf1N1B4_2990	0.59	-1.7
3,359,701	+		Pf1N1B4_2990	0.59	-2.1
3,359,702	-		Pf1N1B4_2990	0.60	-4.8
3,359,702	-		Pf1N1B4_2990	0.60	-0.1
3,359,702	-		Pf1N1B4_2990	0.60	-2.7
3,359,702	-		Pf1N1B4_2990	0.60	-0.1
3,359,702	-		Pf1N1B4_2990	0.60	-0.1
3,359,702	-		Pf1N1B4_2990	0.60	-0.1
3,359,702	-				-1.3
3,359,702	-		Pf1N1B4_2990	0.60	-0.1
3,359,702	-		Pf1N1B4_2990	0.60	-1.3
3,359,702	-		Pf1N1B4_2990	0.60	-0.1
3,359,702	-		Pf1N1B4_2990	0.60	-0.1
3,359,782	+		Pf1N1B4_2990	0.76	-5.4
3,359,782	+		Pf1N1B4_2990	0.76	-0.1
3,359,782	+				-2.8
3,359,868	-				-3.7
3,359,894	+				-1.0
3,359,894	+				-0.1
3,359,894	+				-0.1
3,359,895	-				-2.1
3,359,895	-				-0.1
3,359,895	-				-2.2
3,360,068	+		Pf1N1B4_2991	0.49	-0.1
3,360,145	+		Pf1N1B4_2991	0.77	-0.1
3,360,145	+		Pf1N1B4_2991	0.77	-1.1
3,360,146	-		Pf1N1B4_2991	0.77	-0.1
3,360,146	-		Pf1N1B4_2991	0.77	-0.1
3,360,146	-		Pf1N1B4_2991	0.77	-0.1
3,360,146	-		Pf1N1B4_2991	0.77	-3.9
3,360,146	-		Pf1N1B4_2991	0.77	-0.1
3,360,151	+		Pf1N1B4_2991	0.79	-0.8
3,360,151	+		Pf1N1B4_2991	0.79	-5.2
3,360,151	+		Pf1N1B4_2991	0.79	-0.1
3,360,151	+		Pf1N1B4_2991	0.79	-0.1
3,360,152	-		Pf1N1B4_2991	0.80	-2.1
3,360,186	+				-1.3
3,360,186	+				-0.9
3,360,186	+				-0.1
3,360,186	+				+0.7
3,360,197	+				-2.7
3,360,198	-				-0.1
3,360,252	-				-0.1
3,360,287	-				-1.8
3,360,346	+		Pf1N1B4_2992	0.11	-2.4
3,360,347	-		Pf1N1B4_2992	0.12	-0.1
3,360,347	-		Pf1N1B4_2992	0.12	-1.1
3,360,347	-				-4.3
3,360,347	-		Pf1N1B4_2992	0.12	-0.1
3,360,347	-		Pf1N1B4_2992	0.12	-0.1
3,360,364	+		Pf1N1B4_2992	0.17	-0.1
3,360,364	+		Pf1N1B4_2992	0.17	-0.1
3,360,365	-		Pf1N1B4_2992	0.17	-4.9
3,360,365	-		Pf1N1B4_2992	0.17	-0.1
3,360,365	-		Pf1N1B4_2992	0.17	-0.1
3,360,365	-		Pf1N1B4_2992	0.17	-0.1
3,360,365	-		Pf1N1B4_2992	0.17	-0.1
3,360,469	+		Pf1N1B4_2992	0.47	-0.1
3,360,469	+		Pf1N1B4_2992	0.47	-0.1
3,360,469	+		Pf1N1B4_2992	0.47	-0.9
3,360,469	+		Pf1N1B4_2992	0.47	-0.1
3,360,469	+		Pf1N1B4_2992	0.47	-0.1
3,360,469	+		Pf1N1B4_2992	0.47	-2.1
3,360,469	+		Pf1N1B4_2992	0.47	-0.1
3,360,469	+		Pf1N1B4_2992	0.47	-0.1
3,360,470	-		Pf1N1B4_2992	0.48	-1.5
3,360,470	-		Pf1N1B4_2992	0.48	-3.5
3,360,470	-		Pf1N1B4_2992	0.48	-0.1
3,360,470	-		Pf1N1B4_2992	0.48	-0.1
3,360,470	-		Pf1N1B4_2992	0.48	-0.1
3,360,470	-		Pf1N1B4_2992	0.48	-0.1
3,360,470	-		Pf1N1B4_2992	0.48	-2.8
3,360,470	-		Pf1N1B4_2992	0.48	-0.1
3,360,584	+		Pf1N1B4_2992	0.81	-0.1
3,360,585	-		Pf1N1B4_2992	0.81	-0.1
3,360,646	+				-1.9
3,360,646	+				-0.1
3,360,646	+				-1.0
3,360,646	+				-3.7
3,360,722	+				-1.4
3,360,722	+				-0.1
3,360,787	-				-1.1
3,360,829	+				-2.4
3,360,830	-				-2.2
3,360,830	-				-3.5