Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2894

Experiment: Nitrate reduction

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction
3,246,890	-				-1.4
3,246,890	-				-0.0
3,246,890	-				-1.1
3,246,890	-				-1.1
3,246,890	-				-0.0
3,246,890	-				-3.4
3,246,894	+				-1.7
3,246,895	-				-0.0
3,246,895	-				-0.0
3,246,895	-				-2.3
3,246,901	+				-0.0
3,246,902	-				-2.1
3,246,904	+				-0.0
3,246,905	-				-4.3
3,246,964	+				-0.0
3,246,964	+				-0.0
3,246,964	+				-0.0
3,246,965	-				-0.0
3,246,965	-				-1.6
3,246,965	-				-0.0
3,246,965	-				-0.0
3,246,986	+				-3.3
3,247,070	+				-1.0
3,247,070	+				-0.0
3,247,070	+				-0.0
3,247,071	-				-0.0
3,247,071	-				-0.0
3,247,086	+				-0.0
3,247,145	+		Pf1N1B4_2893	0.13	-0.0
3,247,146	-		Pf1N1B4_2893	0.13	-0.0
3,247,146	-		Pf1N1B4_2893	0.13	-2.2
3,247,168	+		Pf1N1B4_2893	0.17	-0.8
3,247,168	+		Pf1N1B4_2893	0.17	-1.2
3,247,168	+		Pf1N1B4_2893	0.17	-0.0
3,247,252	-		Pf1N1B4_2893	0.30	-0.0
3,247,307	-		Pf1N1B4_2893	0.38	-0.0
3,247,370	+		Pf1N1B4_2893	0.48	-3.8
3,247,370	+		Pf1N1B4_2893	0.48	-4.4
3,247,371	-		Pf1N1B4_2893	0.48	-2.6
3,247,438	+		Pf1N1B4_2893	0.59	-0.0
3,247,438	+		Pf1N1B4_2893	0.59	-0.0
3,247,438	+		Pf1N1B4_2893	0.59	-0.0
3,247,438	+		Pf1N1B4_2893	0.59	-3.6
3,247,438	+		Pf1N1B4_2893	0.59	-1.1
3,247,438	+		Pf1N1B4_2893	0.59	-4.8
3,247,439	-		Pf1N1B4_2893	0.59	-0.0
3,247,439	-		Pf1N1B4_2893	0.59	-0.0
3,247,439	-		Pf1N1B4_2893	0.59	-0.0
3,247,439	-		Pf1N1B4_2893	0.59	-0.0
3,247,439	-		Pf1N1B4_2893	0.59	-1.9
3,247,439	-		Pf1N1B4_2893	0.59	-0.0
3,247,441	+		Pf1N1B4_2893	0.59	-0.0
3,247,441	+		Pf1N1B4_2893	0.59	-0.0
3,247,442	-		Pf1N1B4_2893	0.59	-0.0
3,247,542	+		Pf1N1B4_2893	0.75	-0.0
3,247,542	+		Pf1N1B4_2893	0.75	-2.0
3,247,603	+		Pf1N1B4_2893	0.84	-3.4
3,247,603	+		Pf1N1B4_2893	0.84	-0.6
3,247,603	+				-0.0
3,247,603	+		Pf1N1B4_2893	0.84	-0.0
3,247,604	-		Pf1N1B4_2893	0.84	-2.1
3,247,604	-		Pf1N1B4_2893	0.84	-0.3
3,247,604	-		Pf1N1B4_2893	0.84	-2.6
3,247,676	-				-0.0
3,247,676	-				-0.0
3,247,702	+				-0.0
3,247,702	+				-2.7
3,247,702	+				-1.9
3,247,702	+				-0.0
3,247,702	+				-0.0
3,247,703	-				-0.8
3,247,703	-				-0.0
3,247,703	-				-0.0
3,247,703	-				-0.0
3,247,703	-				-0.0
3,247,983	+		Pf1N1B4_2894	0.52	-0.0
3,247,984	-		Pf1N1B4_2894	0.52	-0.0
3,247,984	-		Pf1N1B4_2894	0.52	-0.0
3,248,121	+		Pf1N1B4_2894	0.78	-2.4
3,248,121	+		Pf1N1B4_2894	0.78	-6.7
3,248,121	+		Pf1N1B4_2894	0.78	-0.0
3,248,121	+		Pf1N1B4_2894	0.78	-0.0
3,248,122	-		Pf1N1B4_2894	0.78	-0.0
3,248,174	+		Pf1N1B4_2894	0.88	-0.0
3,248,184	+				-0.0
3,248,184	+				-4.1
3,248,185	-				-0.0
3,248,185	-				-0.0
3,248,236	+				-0.0
3,248,236	+				-0.0
3,248,260	+				-0.0
3,248,260	+				-0.0
3,248,273	+				-0.0
3,248,305	+				-0.0
3,248,305	+				-1.3
3,248,305	+				-3.0
3,248,305	+				-2.8
3,248,305	+				-1.2
3,248,306	-				-0.0
3,248,306	-				-0.0
3,248,340	+				-0.0
3,248,350	+				-0.0
3,248,351	-				-0.0
3,248,417	+				-0.0
3,248,417	+				-0.0
3,248,417	+				-0.0
3,248,417	+				-1.5
3,248,417	+				-4.5
3,248,418	-				-1.8
3,248,546	+		Pf1N1B4_2895	0.11	-1.5
3,248,546	+		Pf1N1B4_2895	0.11	-0.0
3,248,546	+		Pf1N1B4_2895	0.11	-1.8
3,248,546	+		Pf1N1B4_2895	0.11	-0.0
3,248,547	-		Pf1N1B4_2895	0.11	-3.4
3,248,547	-		Pf1N1B4_2895	0.11	-0.0
3,248,547	-		Pf1N1B4_2895	0.11	-0.0
3,248,547	-		Pf1N1B4_2895	0.11	-0.0
3,248,547	-		Pf1N1B4_2895	0.11	-0.0
3,248,547	-				-0.0
3,248,596	-		Pf1N1B4_2895	0.15	-2.9
3,248,732	+		Pf1N1B4_2895	0.27	-1.3
3,248,733	-		Pf1N1B4_2895	0.27	-1.2
3,248,733	-				-0.0
3,248,733	-		Pf1N1B4_2895	0.27	-2.6
3,248,733	-		Pf1N1B4_2895	0.27	-0.0
3,248,733	-		Pf1N1B4_2895	0.27	-2.1
3,248,733	-		Pf1N1B4_2895	0.27	-1.2
3,248,753	+		Pf1N1B4_2895	0.29	-1.9
3,248,762	+		Pf1N1B4_2895	0.29	-0.6
3,248,762	+		Pf1N1B4_2895	0.29	-1.4
3,248,762	+		Pf1N1B4_2895	0.29	-0.0
3,248,762	+		Pf1N1B4_2895	0.29	-0.0
3,248,762	+		Pf1N1B4_2895	0.29	-1.2
3,248,762	+		Pf1N1B4_2895	0.29	-1.7
3,248,763	-				-0.0
3,248,763	-		Pf1N1B4_2895	0.30	-2.0
3,248,763	-		Pf1N1B4_2895	0.30	-0.0
3,248,763	-		Pf1N1B4_2895	0.30	-0.0
3,248,792	-		Pf1N1B4_2895	0.32	-2.2
3,248,852	+		Pf1N1B4_2895	0.37	-0.0
3,248,871	+		Pf1N1B4_2895	0.39	-0.0
3,248,871	+		Pf1N1B4_2895	0.39	-1.0
3,248,871	+		Pf1N1B4_2895	0.39	-0.0
3,248,872	-		Pf1N1B4_2895	0.39	-1.7
3,248,872	-		Pf1N1B4_2895	0.39	-0.0
3,248,872	-		Pf1N1B4_2895	0.39	-0.0
3,248,872	-		Pf1N1B4_2895	0.39	-0.0
3,248,872	-		Pf1N1B4_2895	0.39	-0.0
3,248,875	+		Pf1N1B4_2895	0.39	-0.0
3,248,955	-		Pf1N1B4_2895	0.46	-0.0
3,248,955	-		Pf1N1B4_2895	0.46	-0.0
3,248,955	-		Pf1N1B4_2895	0.46	-0.7
3,248,966	+		Pf1N1B4_2895	0.47	-0.0
3,248,966	+		Pf1N1B4_2895	0.47	-0.0
3,248,966	+				-3.3
3,248,967	-		Pf1N1B4_2895	0.47	-0.0
3,248,967	-		Pf1N1B4_2895	0.47	-0.0
3,248,972	+		Pf1N1B4_2895	0.47	-0.0
3,248,972	+		Pf1N1B4_2895	0.47	-1.7
3,248,972	+		Pf1N1B4_2895	0.47	-1.2
3,248,973	-		Pf1N1B4_2895	0.47	-0.0
3,248,973	-				-5.1
3,249,119	+		Pf1N1B4_2895	0.60	-0.0
3,249,143	+		Pf1N1B4_2895	0.62	-0.9
3,249,143	+		Pf1N1B4_2895	0.62	-0.0
3,249,215	+		Pf1N1B4_2895	0.68	-1.3
3,249,223	-		Pf1N1B4_2895	0.69	-0.0
3,249,223	-				-0.0
3,249,223	-		Pf1N1B4_2895	0.69	-0.0
3,249,224	+		Pf1N1B4_2895	0.69	-0.0
3,249,224	+		Pf1N1B4_2895	0.69	-0.0
3,249,224	+		Pf1N1B4_2895	0.69	-0.0
3,249,224	+		Pf1N1B4_2895	0.69	-0.0
3,249,225	-		Pf1N1B4_2895	0.69	-2.9
3,249,225	-		Pf1N1B4_2895	0.69	-0.0