Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2680

Experiment: Nitrate reduction

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction
3,016,578	+		Pf1N1B4_2678	0.34	-0.0
3,016,578	+		Pf1N1B4_2678	0.34	-0.0
3,016,603	-		Pf1N1B4_2678	0.42	-0.0
3,016,738	+				-0.0
3,016,764	+				-0.0
3,016,764	+				-0.0
3,016,764	+				-2.5
3,016,765	-				-0.0
3,016,765	-				-0.0
3,016,765	-				-0.0
3,016,765	-				-0.0
3,016,765	-				-2.1
3,016,765	-				-0.0
3,016,810	+				-1.5
3,016,810	+				-0.0
3,016,810	+				-0.3
3,016,810	+				-0.0
3,016,810	+				-0.0
3,016,811	-				-0.0
3,016,811	-				-2.9
3,016,811	-				-0.0
3,016,811	-				-0.0
3,016,832	+				-0.0
3,016,832	+				-0.0
3,016,832	+				-0.0
3,016,832	+				-0.0
3,016,832	+				-0.0
3,016,832	+				-0.0
3,016,833	-				-0.0
3,016,833	-				-0.0
3,016,833	-				-0.3
3,016,833	-				-0.0
3,016,833	-				-2.6
3,016,833	-				-0.0
3,016,833	-				-0.0
3,016,903	+				-0.0
3,016,903	+				-1.8
3,016,903	+				-0.0
3,016,903	+				-0.0
3,016,903	+				-0.0
3,016,903	+				-0.0
3,016,904	-				-0.0
3,016,904	-				-0.0
3,016,904	-				-0.4
3,016,907	+				-0.0
3,016,907	+				-0.0
3,016,907	+				-0.0
3,016,908	-				-0.0
3,016,908	-				-0.0
3,016,908	-				-0.0
3,016,908	-				-0.0
3,016,908	-				-0.0
3,016,908	-				-2.2
3,016,908	-				-4.3
3,016,908	-				-2.0
3,016,908	-				-0.0
3,016,911	+				-0.0
3,016,912	-				-0.0
3,016,912	-				-0.0
3,016,912	-				-1.2
3,016,912	-				-0.0
3,017,014	+		Pf1N1B4_2679	0.17	-0.0
3,017,014	+		Pf1N1B4_2679	0.17	-3.3
3,017,014	+		Pf1N1B4_2679	0.17	-0.0
3,017,015	-				-0.0
3,017,015	-		Pf1N1B4_2679	0.18	-0.0
3,017,015	-		Pf1N1B4_2679	0.18	+0.3
3,017,015	-		Pf1N1B4_2679	0.18	-0.0
3,017,170	+		Pf1N1B4_2679	0.42	-0.0
3,017,171	-		Pf1N1B4_2679	0.42	-0.0
3,017,171	-				-1.6
3,017,171	-		Pf1N1B4_2679	0.42	-0.0
3,017,439	+		Pf1N1B4_2679	0.84	-0.2
3,017,442	+		Pf1N1B4_2679	0.84	-0.0
3,017,443	-		Pf1N1B4_2679	0.84	-0.0
3,017,443	-		Pf1N1B4_2679	0.84	-0.0
3,017,450	+		Pf1N1B4_2679	0.85	-0.0
3,017,451	-		Pf1N1B4_2679	0.86	-0.0
3,017,470	-		Pf1N1B4_2679	0.88	-0.0
3,017,520	+				-2.5
3,017,520	+				-1.0
3,017,520	+				-0.0
3,017,520	+				-1.2
3,017,520	+				-1.1
3,017,520	+				-2.4
3,017,520	+				-0.0
3,017,520	+				-0.0
3,017,520	+				-1.2
3,017,520	+				-0.0
3,017,520	+				-0.6
3,017,520	+				-0.0
3,017,520	+				-0.0
3,017,520	+				-1.0
3,017,521	-				-0.0
3,017,521	-				-0.0
3,017,521	-				-0.0
3,017,521	-				-0.0
3,017,521	-				-0.0
3,017,521	-				-0.0
3,017,521	-				-0.0
3,017,521	-				-0.0
3,017,521	-				-2.0
3,017,521	-				-0.0
3,017,521	-				-0.0
3,017,521	-				-0.0
3,017,539	+				-0.0
3,017,539	+				-2.6
3,017,539	+				-0.0
3,017,539	+				-1.4
3,017,539	+				-0.0
3,017,540	-				-3.7
3,017,540	-				-0.0
3,017,540	-				-0.0
3,017,540	-				-0.0
3,017,540	-				-0.0
3,017,540	-				-0.0
3,017,540	-				-2.0
3,017,540	-				-0.0
3,017,540	-				-0.0
3,017,543	+				-0.0
3,017,543	+				-0.0
3,017,543	+				-0.0
3,017,543	+				-0.0
3,017,543	+				-0.7
3,017,543	+				-0.0
3,017,543	+				-0.0
3,017,544	-				-0.0
3,017,560	+				-0.0
3,017,561	-				-1.9
3,017,561	-				-1.4
3,017,561	-				-0.0
3,017,563	+				-2.0
3,017,563	+				-0.0
3,017,563	+				-0.0
3,017,563	+				-0.0
3,017,563	+				-1.1
3,017,563	+				-1.1
3,017,563	+				-0.0
3,017,564	-				-0.0
3,017,564	-				-0.0
3,017,564	-				-0.0
3,017,564	-				-0.0
3,017,572	+				-0.0
3,017,573	-				-0.5
3,017,573	-				-2.0
3,017,573	-				-0.0
3,017,806	+		Pf1N1B4_2680	0.14	-1.1
3,017,806	+		Pf1N1B4_2680	0.14	-0.0
3,017,807	-				-0.0
3,017,807	-		Pf1N1B4_2680	0.14	-0.0
3,017,807	-		Pf1N1B4_2680	0.14	-0.0
3,017,914	+		Pf1N1B4_2680	0.20	-3.9
3,017,914	+		Pf1N1B4_2680	0.20	-0.0
3,017,915	-		Pf1N1B4_2680	0.20	-2.7
3,018,058	+		Pf1N1B4_2680	0.28	-0.0
3,018,058	+		Pf1N1B4_2680	0.28	-0.0
3,018,058	+		Pf1N1B4_2680	0.28	-0.0
3,018,059	-		Pf1N1B4_2680	0.28	-0.0
3,018,059	-		Pf1N1B4_2680	0.28	-2.7
3,018,223	+		Pf1N1B4_2680	0.38	-0.0
3,018,223	+		Pf1N1B4_2680	0.38	-1.3
3,018,223	+		Pf1N1B4_2680	0.38	-0.0
3,018,223	+		Pf1N1B4_2680	0.38	-0.0
3,018,224	-		Pf1N1B4_2680	0.38	-6.1
3,018,280	+		Pf1N1B4_2680	0.41	-0.0
3,018,280	+		Pf1N1B4_2680	0.41	-0.0
3,018,280	+		Pf1N1B4_2680	0.41	-0.0
3,018,280	+				-0.0
3,018,280	+		Pf1N1B4_2680	0.41	-1.4
3,018,281	-				-2.6
3,018,281	-		Pf1N1B4_2680	0.41	-0.0
3,018,281	-		Pf1N1B4_2680	0.41	-0.0
3,018,281	-		Pf1N1B4_2680	0.41	-1.5
3,018,281	-		Pf1N1B4_2680	0.41	-1.2
3,018,410	+		Pf1N1B4_2680	0.49	-0.0
3,018,410	+		Pf1N1B4_2680	0.49	-0.0
3,018,411	-		Pf1N1B4_2680	0.49	-1.4
3,018,411	-		Pf1N1B4_2680	0.49	-0.0
3,018,458	+		Pf1N1B4_2680	0.52	-0.0
3,018,458	+		Pf1N1B4_2680	0.52	-1.2
3,018,458	+		Pf1N1B4_2680	0.52	-0.0
3,018,458	+		Pf1N1B4_2680	0.52	-2.6
3,018,458	+		Pf1N1B4_2680	0.52	-4.1
3,018,459	-		Pf1N1B4_2680	0.52	-1.8
3,018,459	-		Pf1N1B4_2680	0.52	-1.0
3,018,459	-		Pf1N1B4_2680	0.52	-0.0
3,018,459	-		Pf1N1B4_2680	0.52	-0.0
3,018,472	+		Pf1N1B4_2680	0.53	-1.4
3,018,472	+		Pf1N1B4_2680	0.53	-0.0
3,018,473	-		Pf1N1B4_2680	0.53	-0.0
3,018,473	-		Pf1N1B4_2680	0.53	-0.5
3,018,473	-		Pf1N1B4_2680	0.53	-0.0
3,018,473	-		Pf1N1B4_2680	0.53	+2.6
3,018,473	-		Pf1N1B4_2680	0.53	-0.0
3,018,473	-		Pf1N1B4_2680	0.53	-2.1
3,018,473	-		Pf1N1B4_2680	0.53	-1.1
3,018,473	-		Pf1N1B4_2680	0.53	-1.3
3,018,499	+		Pf1N1B4_2680	0.54	-0.0
3,018,499	+		Pf1N1B4_2680	0.54	-0.0
3,018,500	-		Pf1N1B4_2680	0.54	-0.0
3,018,500	-		Pf1N1B4_2680	0.54	-0.0
3,018,568	+		Pf1N1B4_2680	0.58	-0.0
3,018,568	+		Pf1N1B4_2680	0.58	-0.0
3,018,568	+		Pf1N1B4_2680	0.58	-0.0
3,018,568	+		Pf1N1B4_2680	0.58	-0.0
3,018,568	+		Pf1N1B4_2680	0.58	-0.0
3,018,569	-		Pf1N1B4_2680	0.58	-0.0
3,018,569	-		Pf1N1B4_2680	0.58	-0.0
3,018,569	-		Pf1N1B4_2680	0.58	-1.4
3,018,569	-		Pf1N1B4_2680	0.58	-1.3
3,018,569	-		Pf1N1B4_2680	0.58	-0.0
3,018,569	-		Pf1N1B4_2680	0.58	-0.0
3,018,706	+		Pf1N1B4_2680	0.66	-0.0
3,018,706	+		Pf1N1B4_2680	0.66	-0.0
3,018,706	+		Pf1N1B4_2680	0.66	-0.0
3,018,706	+		Pf1N1B4_2680	0.66	-5.2
3,018,706	+		Pf1N1B4_2680	0.66	-1.9
3,018,706	+		Pf1N1B4_2680	0.66	-1.9
3,018,706	+		Pf1N1B4_2680	0.66	-0.0
3,018,706	+		Pf1N1B4_2680	0.66	-0.0
3,018,706	+		Pf1N1B4_2680	0.66	-0.0
3,018,706	+		Pf1N1B4_2680	0.66	-1.5
3,018,706	+		Pf1N1B4_2680	0.66	-1.9
3,018,706	+		Pf1N1B4_2680	0.66	-2.1
3,018,706	+		Pf1N1B4_2680	0.66	-0.0
3,018,706	+		Pf1N1B4_2680	0.66	-0.0
3,018,706	+		Pf1N1B4_2680	0.66	-0.0
3,018,706	+		Pf1N1B4_2680	0.66	-0.0
3,018,706	+		Pf1N1B4_2680	0.66	-0.0
3,018,706	+		Pf1N1B4_2680	0.66	-0.0
3,018,706	+		Pf1N1B4_2680	0.66	-0.0
3,018,706	+		Pf1N1B4_2680	0.66	-2.3
3,018,707	-		Pf1N1B4_2680	0.66	-0.2
3,018,707	-		Pf1N1B4_2680	0.66	-0.0
3,018,707	-		Pf1N1B4_2680	0.66	+0.1
3,018,707	-		Pf1N1B4_2680	0.66	-0.0
3,018,707	-		Pf1N1B4_2680	0.66	-0.0
3,018,707	-		Pf1N1B4_2680	0.66	-0.0
3,018,707	-		Pf1N1B4_2680	0.66	-0.0
3,018,711	-		Pf1N1B4_2680	0.66	-0.0
3,018,887	-		Pf1N1B4_2680	0.77	-0.0
3,018,887	-		Pf1N1B4_2680	0.77	-4.7
3,018,979	+		Pf1N1B4_2680	0.82	-0.0
3,019,254	+				-0.0
3,019,254	+				-2.8
3,019,286	+				-0.0
3,019,304	+				-0.0
3,019,304	+				-1.3
3,019,305	-				-0.0
3,019,305	-				-0.0
3,019,317	-				-1.7
3,019,327	+				-2.2
3,019,327	+				-0.0
3,019,327	+				-0.0
3,019,327	+				-0.0
3,019,327	+				-2.6
3,019,327	+				-0.0
3,019,327	+				-0.0
3,019,327	+				-2.7
3,019,327	+				-0.0
3,019,327	+				-0.0
3,019,327	+				-1.6
3,019,328	-				-0.0
3,019,328	-				-2.0
3,019,328	-				-1.0
3,019,328	-				-0.0
3,019,328	-				-1.4
3,019,328	-				-3.6
3,019,340	+				-0.7
3,019,341	-				-0.0
3,019,341	-				-1.3
3,019,341	-				-2.3
3,019,403	-				-4.5
3,019,403	-				-0.0
3,019,433	+				-1.2
3,019,433	+				-0.0
3,019,433	+				-0.0
3,019,434	-				-0.5
3,019,434	-				-4.8
3,019,435	+				-0.0
3,019,435	+				-0.0
3,019,435	+				-0.0
3,019,435	+				-1.0
3,019,435	+				-0.0
3,019,435	+				-0.9
3,019,435	+				-0.0
3,019,435	+				-0.0
3,019,435	+				-0.0
3,019,435	+				-1.6
3,019,435	+				-5.1
3,019,435	+				-0.0
3,019,435	+				-1.1
3,019,436	-				-1.1
3,019,436	-				-0.0
3,019,436	-				-0.9
3,019,436	-				-2.8
3,019,436	-				-0.0
3,019,436	-				-0.0
3,019,436	-				-0.0
3,019,436	-				-0.0
3,019,436	-				-0.0
3,019,591	+		Pf1N1B4_2681	0.42	-0.0
3,019,591	+		Pf1N1B4_2681	0.42	-0.0
3,019,591	+		Pf1N1B4_2681	0.42	-3.3
3,019,591	+		Pf1N1B4_2681	0.42	-0.0
3,019,591	+		Pf1N1B4_2681	0.42	-2.2
3,019,591	+		Pf1N1B4_2681	0.42	-0.9
3,019,591	+				+0.1
3,019,591	+		Pf1N1B4_2681	0.42	-2.3
3,019,592	-		Pf1N1B4_2681	0.42	-0.0
3,019,592	-		Pf1N1B4_2681	0.42	-0.2
3,019,592	-		Pf1N1B4_2681	0.42	-0.0
3,019,592	-		Pf1N1B4_2681	0.42	-0.0
3,019,592	-		Pf1N1B4_2681	0.42	-1.1
3,019,592	-		Pf1N1B4_2681	0.42	-0.0
3,019,592	-		Pf1N1B4_2681	0.42	-0.0
3,019,592	-		Pf1N1B4_2681	0.42	-0.0
3,019,592	-		Pf1N1B4_2681	0.42	-0.0
3,019,592	-		Pf1N1B4_2681	0.42	-0.0
3,019,599	+		Pf1N1B4_2681	0.43	-0.0
3,019,600	-		Pf1N1B4_2681	0.44	-0.0
3,019,739	-		Pf1N1B4_2681	0.74	-0.4
3,019,822	+				-0.5
3,019,849	+				-4.1
3,019,849	+				-1.4
3,019,850	-				-0.0
3,019,850	-				-0.0
3,019,850	-				-0.0
3,019,883	+				-0.0
3,019,884	-				-0.0
3,019,885	+				-0.0
3,019,886	-				-2.6
3,019,886	-				-1.3
3,019,886	-				-0.0
3,019,928	-				-2.9
3,019,958	+				-0.6
3,019,958	+				-0.0
3,019,958	+				-0.0
3,019,959	-				-0.0
3,019,959	-				-2.0
3,019,959	-				-0.0
3,019,959	-				-0.0
3,019,988	-				-0.0
3,020,002	+				-0.0
3,020,002	+				-0.2
3,020,002	+				-0.0
3,020,002	+				-0.0
3,020,002	+				-0.0
3,020,002	+				-6.6
3,020,002	+				-0.0
3,020,002	+				-0.0
3,020,003	-				-1.5
3,020,003	-				-0.0
3,020,003	-				-5.4
3,020,003	-				-0.0
3,020,003	-				-0.0
3,020,003	-				-0.0
3,020,004	+				-3.4
3,020,004	+				-0.0
3,020,005	-				-0.0
3,020,005	-				-2.5
3,020,005	-				-0.0
3,020,005	-				-0.0
3,020,005	-				-0.0
3,020,005	-				-1.0
3,020,058	+				-0.0
3,020,058	+				-0.0
3,020,058	+				-4.4
3,020,058	+				-0.0
3,020,059	-				-1.9
3,020,059	-				-0.0
3,020,276	+		Pf1N1B4_2682	0.62	-2.6
3,020,276	+		Pf1N1B4_2682	0.62	-5.9
3,020,277	-		Pf1N1B4_2682	0.63	-0.0
3,020,277	-		Pf1N1B4_2682	0.63	-0.0