Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_263

Experiment: Nitrate reduction

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_262 and Pf1N1B4_263 are separated by 201 nucleotidesPf1N1B4_263 and Pf1N1B4_264 are separated by 103 nucleotides Pf1N1B4_262 - Probable protease htpX homolog (EC 3.4.24.-), at 322,107 to 322,994 _262 Pf1N1B4_263 - Thiopurine S-methyltransferase (EC 2.1.1.67), at 323,196 to 323,852 _263 Pf1N1B4_264 - FIG074102: hypothetical protein, at 323,956 to 324,723 _264 Position (kb) 323 324Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 322.434 kb on + strand, within Pf1N1B4_262at 322.434 kb on + strand, within Pf1N1B4_262at 322.434 kb on + strand, within Pf1N1B4_262at 322.434 kb on + strand, within Pf1N1B4_262at 322.434 kb on + strand, within Pf1N1B4_262at 322.434 kb on + strand, within Pf1N1B4_262at 322.435 kb on - strand, within Pf1N1B4_262at 322.435 kb on - strand, within Pf1N1B4_262at 322.435 kb on - strand, within Pf1N1B4_262at 322.435 kb on - strand, within Pf1N1B4_262at 322.435 kb on - strand, within Pf1N1B4_262at 322.435 kb on - strand, within Pf1N1B4_262at 322.435 kb on - strand, within Pf1N1B4_262at 322.435 kb on - strand, within Pf1N1B4_262at 322.435 kb on - strand, within Pf1N1B4_262at 322.644 kb on - strand, within Pf1N1B4_262at 322.688 kb on + strand, within Pf1N1B4_262at 322.688 kb on + strand, within Pf1N1B4_262at 322.689 kb on - strand, within Pf1N1B4_262at 322.695 kb on + strand, within Pf1N1B4_262at 322.695 kb on + strand, within Pf1N1B4_262at 322.695 kb on + strand, within Pf1N1B4_262at 322.695 kb on + strand, within Pf1N1B4_262at 322.696 kb on - strand, within Pf1N1B4_262at 322.696 kb on - strand, within Pf1N1B4_262at 322.696 kb on - strand, within Pf1N1B4_262at 322.696 kb on - strand, within Pf1N1B4_262at 322.696 kb on - strand, within Pf1N1B4_262at 322.696 kb on - strand, within Pf1N1B4_262at 322.696 kb on - strand, within Pf1N1B4_262at 322.696 kb on - strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.698 kb on + strand, within Pf1N1B4_262at 322.699 kb on - strand, within Pf1N1B4_262at 322.699 kb on - strand, within Pf1N1B4_262at 322.699 kb on - strand, within Pf1N1B4_262at 322.699 kb on - strand, within Pf1N1B4_262at 322.699 kb on - strand, within Pf1N1B4_262at 322.699 kb on - strand, within Pf1N1B4_262at 322.699 kb on - strand, within Pf1N1B4_262at 322.699 kb on - strand, within Pf1N1B4_262at 322.699 kb on - strand, within Pf1N1B4_262at 322.699 kb on - strand, within Pf1N1B4_262at 322.699 kb on - strand, within Pf1N1B4_262at 322.699 kb on - strand, within Pf1N1B4_262at 322.699 kb on - strand, within Pf1N1B4_262at 322.699 kb on - strand, within Pf1N1B4_262at 322.699 kb on - strand, within Pf1N1B4_262at 322.699 kb on - strand, within Pf1N1B4_262at 322.699 kb on - strand, within Pf1N1B4_262at 322.699 kb on - strand, within Pf1N1B4_262at 322.699 kb on - strand, within Pf1N1B4_262at 322.699 kb on - strand, within Pf1N1B4_262at 322.699 kb on - strand, within Pf1N1B4_262at 322.699 kb on - strand, within Pf1N1B4_262at 322.699 kb on - strand, within Pf1N1B4_262at 322.699 kb on - strand, within Pf1N1B4_262at 322.699 kb on - strand, within Pf1N1B4_262at 322.702 kb on + strand, within Pf1N1B4_262at 322.702 kb on + strand, within Pf1N1B4_262at 322.703 kb on - strand, within Pf1N1B4_262at 322.703 kb on - strand, within Pf1N1B4_262at 322.703 kb on - strand, within Pf1N1B4_262at 322.703 kb on - strand, within Pf1N1B4_262at 322.934 kb on + strandat 322.934 kb on + strandat 322.934 kb on + strandat 322.934 kb on + strandat 322.934 kb on + strandat 322.934 kb on + strandat 322.934 kb on + strandat 322.935 kb on - strandat 322.935 kb on - strandat 322.935 kb on - strandat 323.057 kb on + strandat 323.103 kb on - strandat 323.127 kb on + strandat 323.150 kb on - strandat 323.181 kb on - strandat 323.193 kb on + strandat 323.194 kb on - strandat 323.194 kb on - strandat 323.194 kb on - strandat 323.194 kb on - strandat 323.194 kb on - strandat 323.194 kb on - strandat 323.194 kb on - strandat 323.194 kb on - strandat 323.194 kb on - strandat 323.194 kb on - strandat 323.194 kb on - strandat 323.194 kb on - strandat 323.198 kb on - strandat 323.380 kb on + strand, within Pf1N1B4_263at 323.390 kb on + strand, within Pf1N1B4_263at 323.444 kb on - strand, within Pf1N1B4_263at 323.492 kb on - strand, within Pf1N1B4_263at 323.492 kb on - strand, within Pf1N1B4_263at 323.852 kb on + strandat 323.852 kb on + strandat 323.898 kb on - strandat 323.937 kb on + strandat 323.937 kb on + strandat 323.937 kb on + strandat 323.937 kb on + strandat 323.971 kb on + strandat 323.971 kb on + strandat 323.971 kb on + strandat 323.971 kb on + strandat 323.971 kb on + strandat 323.971 kb on + strandat 323.971 kb on + strandat 323.971 kb on + strandat 323.971 kb on + strandat 323.972 kb on - strandat 323.972 kb on - strandat 323.972 kb on - strandat 323.972 kb on - strandat 323.972 kb on - strandat 323.972 kb on - strandat 323.972 kb on - strandat 323.972 kb on - strandat 323.973 kb on + strandat 323.973 kb on + strandat 323.973 kb on + strandat 323.973 kb on + strandat 323.973 kb on + strandat 323.973 kb on + strandat 323.973 kb on + strandat 323.973 kb on + strandat 323.973 kb on + strandat 323.973 kb on + strandat 323.974 kb on - strandat 323.974 kb on - strandat 323.974 kb on - strandat 323.974 kb on - strandat 323.974 kb on - strandat 323.974 kb on - strandat 323.974 kb on - strandat 323.974 kb on - strandat 323.974 kb on - strandat 323.974 kb on - strandat 323.974 kb on - strandat 323.974 kb on - strandat 323.997 kb on - strandat 323.997 kb on - strandat 324.074 kb on + strand, within Pf1N1B4_264at 324.074 kb on + strand, within Pf1N1B4_264at 324.181 kb on + strand, within Pf1N1B4_264at 324.310 kb on + strand, within Pf1N1B4_264at 324.311 kb on - strand, within Pf1N1B4_264at 324.585 kb on + strand, within Pf1N1B4_264at 324.585 kb on + strand, within Pf1N1B4_264at 324.585 kb on + strand, within Pf1N1B4_264at 324.585 kb on + strand, within Pf1N1B4_264at 324.586 kb on - strand, within Pf1N1B4_264at 324.586 kb on - strand, within Pf1N1B4_264at 324.586 kb on - strand, within Pf1N1B4_264at 324.586 kb on - strandat 324.631 kb on + strand, within Pf1N1B4_264at 324.632 kb on - strand, within Pf1N1B4_264at 324.632 kb on - strand, within Pf1N1B4_264at 324.632 kb on - strand, within Pf1N1B4_264at 324.705 kb on + strandat 324.705 kb on + strandat 324.705 kb on + strandat 324.705 kb on + strandat 324.705 kb on + strandat 324.706 kb on - strandat 324.706 kb on - strandat 324.706 kb on - strandat 324.706 kb on - strandat 324.706 kb on - strandat 324.706 kb on - strandat 324.706 kb on - strandat 324.709 kb on + strandat 324.709 kb on + strandat 324.709 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction
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322,434 + Pf1N1B4_262 0.37 -1.5
322,434 + Pf1N1B4_262 0.37 -1.9
322,434 + Pf1N1B4_262 0.37 -3.8
322,434 + Pf1N1B4_262 0.37 -0.1
322,434 + Pf1N1B4_262 0.37 -2.2
322,434 + Pf1N1B4_262 0.37 -2.1
322,435 - Pf1N1B4_262 0.37 -1.7
322,435 - Pf1N1B4_262 0.37 -1.6
322,435 - Pf1N1B4_262 0.37 -2.3
322,435 - Pf1N1B4_262 0.37 -0.1
322,435 - Pf1N1B4_262 0.37 -1.7
322,435 - Pf1N1B4_262 0.37 -2.1
322,435 - Pf1N1B4_262 0.37 -2.8
322,435 - Pf1N1B4_262 0.37 -0.1
322,435 - Pf1N1B4_262 0.37 -4.7
322,644 - Pf1N1B4_262 0.60 -4.1
322,688 + Pf1N1B4_262 0.65 -6.0
322,688 + Pf1N1B4_262 0.65 -2.7
322,689 - Pf1N1B4_262 0.66 -0.1
322,695 + Pf1N1B4_262 0.66 -1.0
322,695 + Pf1N1B4_262 0.66 -1.8
322,695 + Pf1N1B4_262 0.66 -1.8
322,695 + Pf1N1B4_262 0.66 -2.8
322,696 - Pf1N1B4_262 0.66 -0.1
322,696 - Pf1N1B4_262 0.66 -3.6
322,696 - Pf1N1B4_262 0.66 -0.1
322,696 - Pf1N1B4_262 0.66 -2.5
322,696 - Pf1N1B4_262 0.66 -2.3
322,696 - Pf1N1B4_262 0.66 -3.3
322,696 - Pf1N1B4_262 0.66 -0.1
322,696 - Pf1N1B4_262 0.66 -3.7
322,698 + Pf1N1B4_262 0.67 -1.7
322,698 + Pf1N1B4_262 0.67 -0.1
322,698 + Pf1N1B4_262 0.67 -0.1
322,698 + Pf1N1B4_262 0.67 -2.9
322,698 + Pf1N1B4_262 0.67 -0.1
322,698 + Pf1N1B4_262 0.67 -5.5
322,698 + Pf1N1B4_262 0.67 -1.4
322,698 + Pf1N1B4_262 0.67 -4.5
322,698 + Pf1N1B4_262 0.67 -2.4
322,698 + Pf1N1B4_262 0.67 -1.6
322,698 + Pf1N1B4_262 0.67 -0.1
322,698 + Pf1N1B4_262 0.67 -1.4
322,698 + Pf1N1B4_262 0.67 -1.4
322,698 + Pf1N1B4_262 0.67 -0.1
322,698 + Pf1N1B4_262 0.67 -3.5
322,698 + Pf1N1B4_262 0.67 -4.0
322,698 + Pf1N1B4_262 0.67 -2.4
322,698 + Pf1N1B4_262 0.67 -1.3
322,698 + Pf1N1B4_262 0.67 -2.4
322,698 + Pf1N1B4_262 0.67 -5.6
322,698 + Pf1N1B4_262 0.67 -5.8
322,698 + Pf1N1B4_262 0.67 -5.9
322,698 + Pf1N1B4_262 0.67 -2.4
322,698 + Pf1N1B4_262 0.67 -0.1
322,698 + Pf1N1B4_262 0.67 -4.1
322,698 + Pf1N1B4_262 0.67 -2.9
322,698 + Pf1N1B4_262 0.67 -0.1
322,698 + Pf1N1B4_262 0.67 -2.6
322,698 + Pf1N1B4_262 0.67 -1.8
322,698 + Pf1N1B4_262 0.67 -1.7
322,698 + Pf1N1B4_262 0.67 -1.4
322,698 + Pf1N1B4_262 0.67 -4.0
322,698 + Pf1N1B4_262 0.67 -1.3
322,698 + Pf1N1B4_262 0.67 -2.4
322,698 + Pf1N1B4_262 0.67 -4.8
322,698 + Pf1N1B4_262 0.67 -4.9
322,698 + Pf1N1B4_262 0.67 -0.1
322,699 - Pf1N1B4_262 0.67 -3.4
322,699 - Pf1N1B4_262 0.67 -2.4
322,699 - Pf1N1B4_262 0.67 -0.1
322,699 - Pf1N1B4_262 0.67 -0.1
322,699 - Pf1N1B4_262 0.67 -0.1
322,699 - Pf1N1B4_262 0.67 -4.5
322,699 - Pf1N1B4_262 0.67 -0.5
322,699 - Pf1N1B4_262 0.67 -0.1
322,699 - Pf1N1B4_262 0.67 -5.2
322,699 - Pf1N1B4_262 0.67 -0.1
322,699 - Pf1N1B4_262 0.67 -1.3
322,699 - Pf1N1B4_262 0.67 -3.7
322,699 - Pf1N1B4_262 0.67 -0.1
322,699 - Pf1N1B4_262 0.67 -4.0
322,699 - Pf1N1B4_262 0.67 -1.6
322,699 - Pf1N1B4_262 0.67 -3.9
322,699 - Pf1N1B4_262 0.67 -1.6
322,699 - Pf1N1B4_262 0.67 -1.2
322,699 - Pf1N1B4_262 0.67 -3.1
322,699 - Pf1N1B4_262 0.67 -1.7
322,699 - Pf1N1B4_262 0.67 -1.4
322,699 - Pf1N1B4_262 0.67 -0.1
322,699 - Pf1N1B4_262 0.67 -5.7
322,699 - Pf1N1B4_262 0.67 -1.2
322,699 - Pf1N1B4_262 0.67 -0.1
322,702 + Pf1N1B4_262 0.67 -0.6
322,702 + Pf1N1B4_262 0.67 -1.6
322,703 - Pf1N1B4_262 0.67 -0.6
322,703 - Pf1N1B4_262 0.67 +1.1
322,703 - Pf1N1B4_262 0.67 -1.2
322,703 - Pf1N1B4_262 0.67 -0.1
322,934 + -2.3
322,934 + -3.5
322,934 + -2.6
322,934 + -0.1
322,934 + -1.1
322,934 + -4.0
322,934 + -0.1
322,935 - -0.1
322,935 - +0.9
322,935 - -0.1
323,057 + -4.3
323,103 - -0.1
323,127 + -0.1
323,150 - -1.3
323,181 - -0.1
323,193 + -2.7
323,194 - -0.1
323,194 - -0.1
323,194 - -0.1
323,194 - -1.7
323,194 - -0.1
323,194 - -0.1
323,194 - -1.5
323,194 - -2.4
323,194 - -0.1
323,194 - -2.5
323,194 - +0.2
323,194 - -0.1
323,198 - -0.1
323,380 + Pf1N1B4_263 0.28 -2.0
323,390 + Pf1N1B4_263 0.30 -0.1
323,444 - Pf1N1B4_263 0.38 -3.2
323,492 - Pf1N1B4_263 0.45 -0.1
323,492 - Pf1N1B4_263 0.45 -0.1
323,852 + -1.4
323,852 + -0.1
323,898 - -0.1
323,937 + -0.1
323,937 + -0.1
323,937 + -0.1
323,937 + -0.1
323,971 + -3.1
323,971 + -0.1
323,971 + -0.1
323,971 + -0.1
323,971 + -1.6
323,971 + -0.1
323,971 + -0.1
323,971 + -0.1
323,971 + -1.7
323,972 - -0.1
323,972 - -3.3
323,972 - -1.2
323,972 - -0.1
323,972 - -0.1
323,972 - -2.7
323,972 - -2.7
323,972 - -0.1
323,973 + -0.1
323,973 + -1.5
323,973 + -2.5
323,973 + -1.3
323,973 + -0.1
323,973 + -0.1
323,973 + -4.6
323,973 + -0.1
323,973 + -0.1
323,973 + -3.0
323,974 - -0.1
323,974 - -0.1
323,974 - -1.1
323,974 - -3.3
323,974 - -0.1
323,974 - -3.6
323,974 - -0.1
323,974 - -0.1
323,974 - -1.7
323,974 - -0.1
323,974 - -0.1
323,974 - +0.5
323,997 - -0.1
323,997 - -5.1
324,074 + Pf1N1B4_264 0.15 -0.1
324,074 + Pf1N1B4_264 0.15 -0.1
324,181 + Pf1N1B4_264 0.29 -1.7
324,310 + Pf1N1B4_264 0.46 -0.1
324,311 - Pf1N1B4_264 0.46 -0.1
324,585 + Pf1N1B4_264 0.82 -0.1
324,585 + Pf1N1B4_264 0.82 -2.3
324,585 + Pf1N1B4_264 0.82 -0.9
324,585 + Pf1N1B4_264 0.82 -0.1
324,586 - Pf1N1B4_264 0.82 -1.3
324,586 - Pf1N1B4_264 0.82 -0.1
324,586 - Pf1N1B4_264 0.82 -0.9
324,586 - -0.1
324,631 + Pf1N1B4_264 0.88 -0.1
324,632 - Pf1N1B4_264 0.88 -1.7
324,632 - Pf1N1B4_264 0.88 -0.1
324,632 - Pf1N1B4_264 0.88 -1.0
324,705 + -2.2
324,705 + -0.1
324,705 + -0.1
324,705 + -2.3
324,705 + -1.8
324,706 - -0.1
324,706 - -0.1
324,706 - -0.4
324,706 - -0.1
324,706 - -1.6
324,706 - -0.9
324,706 - -0.7
324,709 + -0.1
324,709 + -0.1
324,709 + -0.1

Or see this region's nucleotide sequence