Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1746

Experiment: Nitrate reduction

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction
1,997,339	-		Pf1N1B4_1745	0.77	+0.0
1,997,356	+		Pf1N1B4_1745	0.78	+0.0
1,997,356	+		Pf1N1B4_1745	0.78	+0.0
1,997,357	-		Pf1N1B4_1745	0.78	+0.0
1,997,542	+		Pf1N1B4_1745	0.85	-0.4
1,997,542	+		Pf1N1B4_1745	0.85	+0.0
1,997,542	+		Pf1N1B4_1745	0.85	+0.0
1,997,542	+		Pf1N1B4_1745	0.85	+0.0
1,997,542	+		Pf1N1B4_1745	0.85	+0.0
1,997,542	+		Pf1N1B4_1745	0.85	+0.0
1,997,542	+		Pf1N1B4_1745	0.85	+0.0
1,997,542	+		Pf1N1B4_1745	0.85	+0.0
1,997,542	+		Pf1N1B4_1745	0.85	+0.0
1,997,542	+		Pf1N1B4_1745	0.85	-1.7
1,997,542	+		Pf1N1B4_1745	0.85	+0.0
1,997,542	+		Pf1N1B4_1745	0.85	+0.0
1,997,542	+		Pf1N1B4_1745	0.85	-1.7
1,997,542	+		Pf1N1B4_1745	0.85	-2.3
1,997,542	+		Pf1N1B4_1745	0.85	+0.0
1,997,542	+		Pf1N1B4_1745	0.85	+0.0
1,997,542	+		Pf1N1B4_1745	0.85	-2.4
1,997,542	+		Pf1N1B4_1745	0.85	+0.0
1,997,543	-		Pf1N1B4_1745	0.85	+0.0
1,997,543	-		Pf1N1B4_1745	0.85	+0.0
1,997,543	-		Pf1N1B4_1745	0.85	-1.6
1,997,543	-		Pf1N1B4_1745	0.85	-3.4
1,997,543	-		Pf1N1B4_1745	0.85	+2.8
1,997,543	-		Pf1N1B4_1745	0.85	+0.0
1,997,544	+		Pf1N1B4_1745	0.85	+0.0
1,997,544	+		Pf1N1B4_1745	0.85	+0.0
1,997,545	-		Pf1N1B4_1745	0.85	+0.0
1,997,645	-		Pf1N1B4_1745	0.89	+0.0
1,997,645	-		Pf1N1B4_1745	0.89	+0.0
1,997,745	+				-1.9
1,997,745	+				+0.0
1,997,745	+				-1.3
1,997,746	-				+0.0
1,997,746	-				+0.0
1,997,764	+				+0.0
1,997,764	+				+0.0
1,997,764	+				-1.2
1,997,764	+				+0.0
1,997,764	+				+0.0
1,997,764	+				+0.0
1,997,765	-				+0.0
1,997,800	+				-1.0
1,997,871	+				+0.0
1,997,885	+				+0.0
1,997,885	+				-2.3
1,997,900	+				-2.1
1,997,900	+				+0.0
1,997,900	+				+0.0
1,997,900	+				-2.0
1,997,923	+				+0.0
1,997,923	+				+0.0
1,997,923	+				+0.0
1,997,923	+				+0.0
1,997,923	+				-2.4
1,997,923	+				+0.0
1,997,923	+				+0.0
1,997,923	+				-0.3
1,997,923	+				+0.0
1,997,924	-				+0.0
1,997,924	-				+0.0
1,997,924	-				-1.2
1,997,924	-				-1.5
1,997,924	-				+0.0
1,997,924	-				-4.9
1,997,924	-				+0.0
1,997,924	-				+0.0
1,997,924	-				+0.0
1,997,924	-				-1.9
1,997,924	-				+0.0
1,998,000	-				-0.8
1,998,033	+				+0.0
1,998,034	-				+0.0
1,998,034	-				+0.0
1,998,047	+				+0.0
1,998,047	+				+0.0
1,998,047	+				-1.4
1,998,047	+				-1.1
1,998,047	+				+0.0
1,998,048	-				-1.3
1,998,048	-				+0.0
1,998,048	-				+0.0
1,998,048	-				+0.0
1,998,048	-				+0.0
1,998,048	-				-1.0
1,998,048	-				-2.5
1,998,048	-				-4.9
1,998,048	-				+0.0
1,998,141	+				+0.0
1,998,141	+				-0.8
1,998,142	-				+0.0
1,998,142	-				+0.0
1,998,290	-				+0.0
1,998,323	-				+0.0
1,998,435	-				-1.9
1,998,435	-				-4.1
1,999,007	+		Pf1N1B4_1746	0.46	+0.0
1,999,145	+		Pf1N1B4_1746	0.55	-1.5
1,999,154	+		Pf1N1B4_1746	0.56	+0.0
1,999,154	+		Pf1N1B4_1746	0.56	+0.0
1,999,155	-		Pf1N1B4_1746	0.56	+0.0
1,999,254	+		Pf1N1B4_1746	0.63	+0.0
1,999,255	-		Pf1N1B4_1746	0.63	+0.0
1,999,255	-		Pf1N1B4_1746	0.63	-1.9
1,999,255	-		Pf1N1B4_1746	0.63	-1.3
1,999,255	-		Pf1N1B4_1746	0.63	+0.0
1,999,256	+		Pf1N1B4_1746	0.63	+0.0
1,999,360	+		Pf1N1B4_1746	0.70	-1.0
1,999,481	+		Pf1N1B4_1746	0.78	+0.0
1,999,481	+		Pf1N1B4_1746	0.78	+0.0
1,999,481	+		Pf1N1B4_1746	0.78	+0.0
1,999,481	+		Pf1N1B4_1746	0.78	+0.0
1,999,482	-		Pf1N1B4_1746	0.78	+0.9
1,999,639	+		Pf1N1B4_1746	0.89	-1.7
1,999,639	+		Pf1N1B4_1746	0.89	+0.0
1,999,639	+		Pf1N1B4_1746	0.89	+0.0
1,999,640	-		Pf1N1B4_1746	0.89	+0.0
1,999,640	-		Pf1N1B4_1746	0.89	+0.0
1,999,640	-		Pf1N1B4_1746	0.89	+0.0
1,999,640	-		Pf1N1B4_1746	0.89	-0.7
1,999,767	-				+0.0
1,999,813	+				+0.0
1,999,814	-				+0.0
1,999,816	+				+0.0
1,999,816	+				-0.7
1,999,817	-				+0.0
1,999,833	+				+0.0
1,999,833	+				-4.2
1,999,834	-				+0.0
1,999,834	-				-1.7
1,999,834	-				+0.0
1,999,844	+				-1.8
1,999,986	+				+0.0
2,000,129	+				+0.0
2,000,129	+				+0.0
2,000,130	-				+0.0
2,000,187	+		Pf1N1B4_1748	0.10	+0.1
2,000,187	+		Pf1N1B4_1748	0.10	+0.0
2,000,187	+		Pf1N1B4_1748	0.10	+0.0
2,000,187	+		Pf1N1B4_1748	0.10	+0.0
2,000,188	-		Pf1N1B4_1748	0.10	+0.0
2,000,188	-		Pf1N1B4_1748	0.10	+0.0
2,000,188	-		Pf1N1B4_1748	0.10	+0.0
2,000,188	-		Pf1N1B4_1748	0.10	+0.0
2,000,188	-		Pf1N1B4_1748	0.10	+0.0
2,000,188	-				+0.0
2,000,188	-		Pf1N1B4_1748	0.10	+0.0
2,000,188	-		Pf1N1B4_1748	0.10	+0.0
2,000,188	-		Pf1N1B4_1748	0.10	+0.0
2,000,189	+		Pf1N1B4_1748	0.11	+0.0
2,000,189	+		Pf1N1B4_1748	0.11	-1.8
2,000,189	+		Pf1N1B4_1748	0.11	+0.0
2,000,189	+		Pf1N1B4_1748	0.11	+0.0
2,000,190	-		Pf1N1B4_1748	0.11	+0.0
2,000,457	-		Pf1N1B4_1748	0.53	+0.0
2,000,472	-		Pf1N1B4_1748	0.55	+0.0
2,000,578	+		Pf1N1B4_1748	0.72	+0.0
2,000,579	-		Pf1N1B4_1748	0.72	+0.0
2,000,645	-		Pf1N1B4_1748	0.82	+0.0
2,000,690	+		Pf1N1B4_1748	0.89	+0.0
2,000,690	+		Pf1N1B4_1748	0.89	-1.5
2,000,690	+		Pf1N1B4_1748	0.89	-1.0
2,000,691	-		Pf1N1B4_1748	0.89	+0.0
2,000,691	-		Pf1N1B4_1748	0.89	+0.0
2,000,691	-		Pf1N1B4_1748	0.89	+0.0
2,000,691	-		Pf1N1B4_1748	0.89	+0.0
2,000,691	-		Pf1N1B4_1748	0.89	+0.0
2,000,691	-		Pf1N1B4_1748	0.89	-2.1
2,000,758	+				+0.0
2,000,758	+				+0.0
2,000,759	-				+0.0
2,000,761	+				-3.2
2,000,761	+				+0.0
2,000,761	+				+0.0
2,000,761	+				+0.0
2,000,762	-				+0.0
2,000,762	-				-1.9
2,000,762	-				+0.0
2,000,762	-				+0.0
2,000,762	-				+0.0
2,000,762	-				+0.0
2,000,762	-				+0.0
2,000,762	-				-0.8
2,000,762	-				+0.0
2,000,762	-				+0.0
2,000,762	-				+0.0
2,000,762	-				+0.0
2,000,762	-				+0.0
2,000,762	-				+0.0