Strain Fitness in Pantoea sp. MT58 around IAI47_09340

Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=36hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_09335 and IAI47_09340 are separated by 153 nucleotidesIAI47_09340 and IAI47_09345 are separated by 187 nucleotides IAI47_09335: IAI47_09335 - Tar ligand binding domain-containing protein, at 1,971,576 to 1,973,120 _09335 IAI47_09340: IAI47_09340 - DUF1275 domain-containing protein, at 1,973,274 to 1,974,002 _09340 IAI47_09345: IAI47_09345 - LysR family transcriptional regulator, at 1,974,190 to 1,975,086 _09345 Position (kb) 1973 1974 1975Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1972.355 kb on + strand, within IAI47_09335at 1972.355 kb on + strand, within IAI47_09335at 1972.418 kb on + strand, within IAI47_09335at 1972.439 kb on + strand, within IAI47_09335at 1972.620 kb on - strand, within IAI47_09335at 1972.620 kb on - strand, within IAI47_09335at 1972.620 kb on - strand, within IAI47_09335at 1972.685 kb on + strand, within IAI47_09335at 1972.685 kb on + strand, within IAI47_09335at 1972.685 kb on + strand, within IAI47_09335at 1972.685 kb on + strand, within IAI47_09335at 1972.685 kb on + strand, within IAI47_09335at 1972.685 kb on + strand, within IAI47_09335at 1972.750 kb on + strand, within IAI47_09335at 1972.769 kb on + strand, within IAI47_09335at 1972.892 kb on + strand, within IAI47_09335at 1972.931 kb on + strand, within IAI47_09335at 1972.931 kb on + strand, within IAI47_09335at 1972.931 kb on + strand, within IAI47_09335at 1972.931 kb on + strand, within IAI47_09335at 1972.931 kb on + strand, within IAI47_09335at 1972.931 kb on + strand, within IAI47_09335at 1972.931 kb on + strand, within IAI47_09335at 1972.931 kb on + strand, within IAI47_09335at 1972.931 kb on + strand, within IAI47_09335at 1972.931 kb on + strand, within IAI47_09335at 1972.931 kb on + strand, within IAI47_09335at 1972.932 kb on - strand, within IAI47_09335at 1972.932 kb on - strand, within IAI47_09335at 1972.932 kb on - strand, within IAI47_09335at 1972.932 kb on - strand, within IAI47_09335at 1972.932 kb on - strand, within IAI47_09335at 1972.932 kb on - strand, within IAI47_09335at 1972.932 kb on - strand, within IAI47_09335at 1972.932 kb on - strand, within IAI47_09335at 1973.000 kb on + strandat 1973.006 kb on + strandat 1973.077 kb on - strandat 1973.118 kb on + strandat 1973.118 kb on + strandat 1973.143 kb on + strandat 1973.143 kb on + strandat 1973.143 kb on + strandat 1973.143 kb on + strandat 1973.143 kb on + strandat 1973.143 kb on + strandat 1973.144 kb on - strandat 1973.144 kb on - strandat 1973.175 kb on + strandat 1973.175 kb on + strandat 1973.176 kb on - strandat 1973.179 kb on + strandat 1973.179 kb on + strandat 1973.179 kb on + strandat 1973.179 kb on + strandat 1973.180 kb on - strandat 1973.180 kb on - strandat 1973.180 kb on - strandat 1973.180 kb on - strandat 1973.180 kb on - strandat 1973.180 kb on - strandat 1973.243 kb on + strandat 1973.243 kb on + strandat 1973.244 kb on - strandat 1973.244 kb on - strandat 1973.245 kb on + strandat 1973.246 kb on - strandat 1973.303 kb on + strandat 1973.304 kb on - strandat 1973.483 kb on - strand, within IAI47_09340at 1973.486 kb on + strand, within IAI47_09340at 1973.486 kb on + strand, within IAI47_09340at 1973.487 kb on - strand, within IAI47_09340at 1973.519 kb on + strand, within IAI47_09340at 1973.549 kb on + strand, within IAI47_09340at 1973.549 kb on + strand, within IAI47_09340at 1973.549 kb on + strand, within IAI47_09340at 1973.549 kb on + strand, within IAI47_09340at 1973.550 kb on - strand, within IAI47_09340at 1973.550 kb on - strand, within IAI47_09340at 1973.550 kb on - strand, within IAI47_09340at 1973.550 kb on - strand, within IAI47_09340at 1973.553 kb on + strand, within IAI47_09340at 1973.553 kb on + strand, within IAI47_09340at 1973.553 kb on + strand, within IAI47_09340at 1973.553 kb on + strand, within IAI47_09340at 1973.553 kb on + strand, within IAI47_09340at 1973.553 kb on + strand, within IAI47_09340at 1973.554 kb on - strand, within IAI47_09340at 1973.554 kb on - strand, within IAI47_09340at 1973.554 kb on - strand, within IAI47_09340at 1973.554 kb on - strand, within IAI47_09340at 1973.644 kb on + strand, within IAI47_09340at 1973.645 kb on - strand, within IAI47_09340at 1973.690 kb on + strand, within IAI47_09340at 1973.691 kb on - strand, within IAI47_09340at 1973.703 kb on - strand, within IAI47_09340at 1973.717 kb on + strand, within IAI47_09340at 1973.717 kb on + strand, within IAI47_09340at 1973.717 kb on + strand, within IAI47_09340at 1973.717 kb on + strand, within IAI47_09340at 1973.718 kb on - strand, within IAI47_09340at 1973.718 kb on - strand, within IAI47_09340at 1973.718 kb on - strand, within IAI47_09340at 1973.718 kb on - strand, within IAI47_09340at 1973.718 kb on - strand, within IAI47_09340at 1973.718 kb on - strand, within IAI47_09340at 1973.726 kb on + strand, within IAI47_09340at 1973.726 kb on + strand, within IAI47_09340at 1973.727 kb on - strand, within IAI47_09340at 1973.727 kb on - strand, within IAI47_09340at 1973.783 kb on - strand, within IAI47_09340at 1973.789 kb on + strand, within IAI47_09340at 1973.815 kb on + strand, within IAI47_09340at 1973.815 kb on + strand, within IAI47_09340at 1973.815 kb on + strand, within IAI47_09340at 1973.815 kb on + strand, within IAI47_09340at 1973.815 kb on + strand, within IAI47_09340at 1973.816 kb on - strand, within IAI47_09340at 1973.816 kb on - strand, within IAI47_09340at 1973.816 kb on - strand, within IAI47_09340at 1973.816 kb on - strand, within IAI47_09340at 1973.817 kb on + strand, within IAI47_09340at 1973.817 kb on + strand, within IAI47_09340at 1973.818 kb on - strand, within IAI47_09340at 1973.818 kb on - strand, within IAI47_09340at 1973.818 kb on - strand, within IAI47_09340at 1973.836 kb on + strand, within IAI47_09340at 1973.837 kb on - strand, within IAI47_09340at 1973.837 kb on - strand, within IAI47_09340at 1973.902 kb on + strand, within IAI47_09340at 1973.907 kb on + strand, within IAI47_09340at 1973.907 kb on + strand, within IAI47_09340at 1973.938 kb on + strandat 1973.939 kb on - strandat 1974.000 kb on + strandat 1974.000 kb on + strandat 1974.001 kb on - strandat 1974.001 kb on - strandat 1974.001 kb on - strandat 1974.010 kb on + strandat 1974.011 kb on - strandat 1974.011 kb on - strandat 1974.011 kb on - strandat 1974.098 kb on + strandat 1974.098 kb on + strandat 1974.099 kb on - strandat 1974.107 kb on + strandat 1974.107 kb on + strandat 1974.108 kb on - strandat 1974.121 kb on + strandat 1974.121 kb on + strandat 1974.122 kb on - strandat 1974.167 kb on + strandat 1974.182 kb on + strandat 1974.186 kb on + strandat 1974.211 kb on + strandat 1974.212 kb on - strandat 1974.212 kb on - strandat 1974.212 kb on - strandat 1974.216 kb on - strandat 1974.219 kb on + strandat 1974.220 kb on - strandat 1974.345 kb on + strand, within IAI47_09345at 1974.361 kb on - strand, within IAI47_09345at 1974.412 kb on + strand, within IAI47_09345at 1974.413 kb on - strand, within IAI47_09345at 1974.551 kb on - strand, within IAI47_09345at 1974.698 kb on + strand, within IAI47_09345at 1974.698 kb on + strand, within IAI47_09345at 1974.698 kb on + strand, within IAI47_09345at 1974.698 kb on + strand, within IAI47_09345at 1974.699 kb on - strand, within IAI47_09345at 1974.809 kb on - strand, within IAI47_09345at 1974.809 kb on - strand, within IAI47_09345at 1974.816 kb on + strand, within IAI47_09345at 1974.817 kb on - strand, within IAI47_09345at 1974.817 kb on - strand, within IAI47_09345at 1974.817 kb on - strand, within IAI47_09345at 1974.870 kb on + strand, within IAI47_09345at 1974.870 kb on + strand, within IAI47_09345at 1974.870 kb on + strand, within IAI47_09345at 1974.871 kb on - strand, within IAI47_09345at 1974.871 kb on - strand, within IAI47_09345at 1974.871 kb on - strand, within IAI47_09345at 1974.871 kb on - strand, within IAI47_09345at 1974.871 kb on - strand, within IAI47_09345at 1974.873 kb on + strand, within IAI47_09345at 1974.873 kb on + strand, within IAI47_09345at 1974.873 kb on + strand, within IAI47_09345at 1974.873 kb on + strand, within IAI47_09345at 1974.873 kb on + strand, within IAI47_09345at 1974.874 kb on - strand, within IAI47_09345at 1974.874 kb on - strand, within IAI47_09345at 1974.874 kb on - strand, within IAI47_09345at 1974.874 kb on - strand, within IAI47_09345at 1974.975 kb on + strand, within IAI47_09345at 1974.975 kb on + strand, within IAI47_09345at 1974.976 kb on - strand, within IAI47_09345at 1974.976 kb on - strand, within IAI47_09345

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=36hrs; Outgrowth=LBkan50
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1,972,355 + IAI47_09335 0.50 +0.6
1,972,355 + IAI47_09335 0.50 -0.3
1,972,418 + IAI47_09335 0.54 +0.4
1,972,439 + IAI47_09335 0.56 -0.2
1,972,620 - IAI47_09335 0.68 -0.2
1,972,620 - IAI47_09335 0.68 -1.9
1,972,620 - IAI47_09335 0.68 +0.0
1,972,685 + IAI47_09335 0.72 -0.7
1,972,685 + IAI47_09335 0.72 +2.7
1,972,685 + IAI47_09335 0.72 -1.2
1,972,685 + IAI47_09335 0.72 -0.0
1,972,685 + IAI47_09335 0.72 -0.9
1,972,685 + IAI47_09335 0.72 +0.7
1,972,750 + IAI47_09335 0.76 -0.9
1,972,769 + IAI47_09335 0.77 -0.2
1,972,892 + IAI47_09335 0.85 +0.6
1,972,931 + IAI47_09335 0.88 -0.2
1,972,931 + IAI47_09335 0.88 +0.8
1,972,931 + IAI47_09335 0.88 -0.2
1,972,931 + IAI47_09335 0.88 +1.6
1,972,931 + IAI47_09335 0.88 -1.8
1,972,931 + IAI47_09335 0.88 +0.6
1,972,931 + IAI47_09335 0.88 +1.3
1,972,931 + IAI47_09335 0.88 -0.3
1,972,931 + IAI47_09335 0.88 +0.6
1,972,931 + IAI47_09335 0.88 +0.0
1,972,931 + IAI47_09335 0.88 +0.1
1,972,932 - IAI47_09335 0.88 -1.6
1,972,932 - IAI47_09335 0.88 -2.2
1,972,932 - IAI47_09335 0.88 +0.0
1,972,932 - IAI47_09335 0.88 -1.0
1,972,932 - IAI47_09335 0.88 -1.0
1,972,932 - IAI47_09335 0.88 -0.2
1,972,932 - IAI47_09335 0.88 -1.2
1,972,932 - IAI47_09335 0.88 -0.5
1,973,000 + +1.8
1,973,006 + +1.2
1,973,077 - -0.7
1,973,118 + +0.8
1,973,118 + -0.2
1,973,143 + -1.4
1,973,143 + +0.8
1,973,143 + +0.1
1,973,143 + -0.0
1,973,143 + +0.9
1,973,143 + -0.3
1,973,144 - +1.1
1,973,144 - -2.2
1,973,175 + +0.9
1,973,175 + +0.3
1,973,176 - +1.5
1,973,179 + -0.4
1,973,179 + -0.8
1,973,179 + +1.2
1,973,179 + +0.5
1,973,180 - +0.1
1,973,180 - +0.3
1,973,180 - +0.6
1,973,180 - -1.4
1,973,180 - +1.9
1,973,180 - +1.0
1,973,243 + +1.4
1,973,243 + -0.1
1,973,244 - +2.3
1,973,244 - -0.9
1,973,245 + -0.4
1,973,246 - -0.1
1,973,303 + +1.0
1,973,304 - -1.8
1,973,483 - IAI47_09340 0.29 -2.2
1,973,486 + IAI47_09340 0.29 -1.0
1,973,486 + IAI47_09340 0.29 +0.4
1,973,487 - IAI47_09340 0.29 -1.5
1,973,519 + IAI47_09340 0.34 -2.4
1,973,549 + IAI47_09340 0.38 +0.3
1,973,549 + IAI47_09340 0.38 -0.2
1,973,549 + IAI47_09340 0.38 -1.7
1,973,549 + IAI47_09340 0.38 -1.5
1,973,550 - IAI47_09340 0.38 -0.7
1,973,550 - IAI47_09340 0.38 -0.6
1,973,550 - IAI47_09340 0.38 -0.1
1,973,550 - IAI47_09340 0.38 -1.3
1,973,553 + IAI47_09340 0.38 -1.3
1,973,553 + IAI47_09340 0.38 -1.7
1,973,553 + IAI47_09340 0.38 -0.7
1,973,553 + IAI47_09340 0.38 -0.9
1,973,553 + IAI47_09340 0.38 -0.7
1,973,553 + IAI47_09340 0.38 -0.2
1,973,554 - IAI47_09340 0.38 -1.0
1,973,554 - IAI47_09340 0.38 -1.5
1,973,554 - IAI47_09340 0.38 +0.0
1,973,554 - IAI47_09340 0.38 -1.3
1,973,644 + IAI47_09340 0.51 -1.7
1,973,645 - IAI47_09340 0.51 -0.7
1,973,690 + IAI47_09340 0.57 -0.1
1,973,691 - IAI47_09340 0.57 +0.3
1,973,703 - IAI47_09340 0.59 -0.1
1,973,717 + IAI47_09340 0.61 -1.4
1,973,717 + IAI47_09340 0.61 +1.1
1,973,717 + IAI47_09340 0.61 +0.5
1,973,717 + IAI47_09340 0.61 -1.2
1,973,718 - IAI47_09340 0.61 -0.6
1,973,718 - IAI47_09340 0.61 -2.0
1,973,718 - IAI47_09340 0.61 -0.1
1,973,718 - IAI47_09340 0.61 -0.1
1,973,718 - IAI47_09340 0.61 -0.2
1,973,718 - IAI47_09340 0.61 -0.3
1,973,726 + IAI47_09340 0.62 -1.3
1,973,726 + IAI47_09340 0.62 +0.2
1,973,727 - IAI47_09340 0.62 +0.2
1,973,727 - IAI47_09340 0.62 -1.6
1,973,783 - IAI47_09340 0.70 +1.2
1,973,789 + IAI47_09340 0.71 +0.9
1,973,815 + IAI47_09340 0.74 -3.2
1,973,815 + IAI47_09340 0.74 -1.6
1,973,815 + IAI47_09340 0.74 -1.0
1,973,815 + IAI47_09340 0.74 -1.6
1,973,815 + IAI47_09340 0.74 -1.4
1,973,816 - IAI47_09340 0.74 +0.6
1,973,816 - IAI47_09340 0.74 -0.2
1,973,816 - IAI47_09340 0.74 -0.6
1,973,816 - IAI47_09340 0.74 +0.3
1,973,817 + IAI47_09340 0.74 -0.1
1,973,817 + IAI47_09340 0.74 -1.0
1,973,818 - IAI47_09340 0.75 +1.9
1,973,818 - IAI47_09340 0.75 +1.3
1,973,818 - IAI47_09340 0.75 +0.5
1,973,836 + IAI47_09340 0.77 -1.4
1,973,837 - IAI47_09340 0.77 +1.7
1,973,837 - IAI47_09340 0.77 +1.7
1,973,902 + IAI47_09340 0.86 -0.7
1,973,907 + IAI47_09340 0.87 -1.3
1,973,907 + IAI47_09340 0.87 -0.4
1,973,938 + +0.6
1,973,939 - +0.3
1,974,000 + +0.3
1,974,000 + +0.7
1,974,001 - +2.5
1,974,001 - +0.2
1,974,001 - +0.3
1,974,010 + -0.7
1,974,011 - +0.5
1,974,011 - +0.7
1,974,011 - -2.4
1,974,098 + +1.1
1,974,098 + -0.2
1,974,099 - +0.9
1,974,107 + -2.4
1,974,107 + -0.2
1,974,108 - +0.2
1,974,121 + +1.0
1,974,121 + -0.3
1,974,122 - +0.9
1,974,167 + +1.7
1,974,182 + +1.3
1,974,186 + +0.4
1,974,211 + +2.4
1,974,212 - +1.4
1,974,212 - +0.1
1,974,212 - +0.4
1,974,216 - +0.0
1,974,219 + +1.1
1,974,220 - +0.3
1,974,345 + IAI47_09345 0.17 +1.3
1,974,361 - IAI47_09345 0.19 +2.1
1,974,412 + IAI47_09345 0.25 +0.7
1,974,413 - IAI47_09345 0.25 -0.4
1,974,551 - IAI47_09345 0.40 +0.8
1,974,698 + IAI47_09345 0.57 +1.4
1,974,698 + IAI47_09345 0.57 +0.6
1,974,698 + IAI47_09345 0.57 -0.0
1,974,698 + IAI47_09345 0.57 +0.8
1,974,699 - IAI47_09345 0.57 -0.7
1,974,809 - IAI47_09345 0.69 -2.1
1,974,809 - IAI47_09345 0.69 -1.3
1,974,816 + IAI47_09345 0.70 +0.2
1,974,817 - IAI47_09345 0.70 +1.2
1,974,817 - IAI47_09345 0.70 +0.5
1,974,817 - IAI47_09345 0.70 +0.6
1,974,870 + IAI47_09345 0.76 +0.8
1,974,870 + IAI47_09345 0.76 +1.7
1,974,870 + IAI47_09345 0.76 +0.1
1,974,871 - IAI47_09345 0.76 +0.1
1,974,871 - IAI47_09345 0.76 +0.0
1,974,871 - IAI47_09345 0.76 -0.8
1,974,871 - IAI47_09345 0.76 +0.6
1,974,871 - IAI47_09345 0.76 +1.1
1,974,873 + IAI47_09345 0.76 +0.3
1,974,873 + IAI47_09345 0.76 +1.6
1,974,873 + IAI47_09345 0.76 +1.4
1,974,873 + IAI47_09345 0.76 -0.7
1,974,873 + IAI47_09345 0.76 -0.1
1,974,874 - IAI47_09345 0.76 -0.2
1,974,874 - IAI47_09345 0.76 +1.7
1,974,874 - IAI47_09345 0.76 -0.3
1,974,874 - IAI47_09345 0.76 +1.0
1,974,975 + IAI47_09345 0.88 +0.6
1,974,975 + IAI47_09345 0.88 +1.5
1,974,976 - IAI47_09345 0.88 -0.6
1,974,976 - IAI47_09345 0.88 -0.3

Or see this region's nucleotide sequence