Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08760 and PGA1_c08770 overlap by 8 nucleotides PGA1_c08770 and PGA1_c08780 are separated by 38 nucleotides PGA1_c08780 and PGA1_c08790 are separated by 1 nucleotides
PGA1_c08760: PGA1_c08760 - sarcosine oxidase subunit alpha, at 903,382 to 906,303
_c08760
PGA1_c08770: PGA1_c08770 - putative sarcosine oxidase, subunit gamma, at 906,296 to 906,841
_c08770
PGA1_c08780: PGA1_c08780 - hypothetical protein, at 906,880 to 907,218
_c08780
PGA1_c08790: PGA1_c08790 - DNA primase DnaG, at 907,220 to 909,469
_c08790
Position (kb)
906
907
908 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 905.931 kb on - strand, within PGA1_c08760 at 905.953 kb on + strand, within PGA1_c08760 at 905.957 kb on + strand, within PGA1_c08760 at 905.958 kb on + strand, within PGA1_c08760 at 905.961 kb on - strand, within PGA1_c08760 at 906.035 kb on - strand at 906.059 kb on - strand at 906.109 kb on + strand at 906.140 kb on + strand at 906.172 kb on - strand at 906.174 kb on + strand at 906.174 kb on + strand at 906.174 kb on + strand at 906.174 kb on + strand at 906.174 kb on + strand at 906.174 kb on + strand at 906.174 kb on + strand at 906.174 kb on + strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.194 kb on + strand at 906.219 kb on + strand at 906.223 kb on - strand at 906.225 kb on - strand at 906.240 kb on - strand at 906.269 kb on + strand at 906.436 kb on + strand, within PGA1_c08770 at 906.452 kb on + strand, within PGA1_c08770 at 906.522 kb on + strand, within PGA1_c08770 at 906.530 kb on - strand, within PGA1_c08770 at 906.551 kb on + strand, within PGA1_c08770 at 906.555 kb on - strand, within PGA1_c08770 at 906.570 kb on + strand, within PGA1_c08770 at 906.613 kb on + strand, within PGA1_c08770 at 906.623 kb on + strand, within PGA1_c08770 at 906.630 kb on + strand, within PGA1_c08770 at 906.679 kb on + strand, within PGA1_c08770 at 906.688 kb on + strand, within PGA1_c08770 at 906.886 kb on - strand at 906.887 kb on + strand at 906.969 kb on + strand, within PGA1_c08780 at 907.060 kb on + strand, within PGA1_c08780
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 905,931 - PGA1_c08760 0.87 -0.3 905,953 + PGA1_c08760 0.88 -1.1 905,957 + PGA1_c08760 0.88 -0.4 905,958 + PGA1_c08760 0.88 -0.5 905,961 - PGA1_c08760 0.88 +0.2 906,035 - -0.0 906,059 - +0.1 906,109 + -0.2 906,140 + +1.3 906,172 - -0.3 906,174 + +0.4 906,174 + +0.9 906,174 + +0.4 906,174 + -0.3 906,174 + +0.7 906,174 + +0.5 906,174 + -0.7 906,174 + -1.3 906,182 - -0.1 906,182 - -1.7 906,182 - -0.1 906,182 - -0.4 906,182 - -0.5 906,182 - -3.1 906,182 - +0.1 906,182 - -0.2 906,182 - +0.0 906,194 + -0.1 906,219 + -0.4 906,223 - -0.3 906,225 - +0.2 906,240 - +1.1 906,269 + -0.2 906,436 + PGA1_c08770 0.26 -0.2 906,452 + PGA1_c08770 0.29 +0.2 906,522 + PGA1_c08770 0.41 -0.1 906,530 - PGA1_c08770 0.43 +0.3 906,551 + PGA1_c08770 0.47 -0.4 906,555 - PGA1_c08770 0.47 -0.9 906,570 + PGA1_c08770 0.50 +1.2 906,613 + PGA1_c08770 0.58 +0.7 906,623 + PGA1_c08770 0.60 -0.1 906,630 + PGA1_c08770 0.61 -0.3 906,679 + PGA1_c08770 0.70 +0.4 906,688 + PGA1_c08770 0.72 +0.0 906,886 - -1.1 906,887 + -0.7 906,969 + PGA1_c08780 0.26 -1.2 907,060 + PGA1_c08780 0.53 -1.1
Or see this region's nucleotide sequence