Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08630 and PGA1_c08640 are separated by 141 nucleotides PGA1_c08640 and PGA1_c08650 are separated by 133 nucleotides
PGA1_c08630: PGA1_c08630 - single-stranded-DNA-specific exonuclease RecJ, at 889,531 to 891,273
_c08630
PGA1_c08640: PGA1_c08640 - fructose-1,6-bisphosphatase class 2, at 891,415 to 892,398
_c08640
PGA1_c08650: PGA1_c08650 - homoserine dehydrogenase Hom, at 892,532 to 893,818
_c08650
Position (kb) 891
892
893 Strain fitness (log2 ratio) -2
-1
0
1 at 891.332 kb on + strand at 891.332 kb on + strand at 891.332 kb on + strand at 891.332 kb on + strand at 891.340 kb on - strand at 891.347 kb on + strand at 891.350 kb on - strand at 891.355 kb on - strand at 891.406 kb on + strand at 891.414 kb on - strand at 891.415 kb on + strand at 891.435 kb on + strand at 891.440 kb on - strand at 891.744 kb on - strand, within PGA1_c08640 at 891.794 kb on - strand, within PGA1_c08640 at 891.920 kb on + strand, within PGA1_c08640 at 891.921 kb on - strand, within PGA1_c08640 at 891.922 kb on - strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.040 kb on - strand, within PGA1_c08640 at 892.040 kb on - strand, within PGA1_c08640 at 892.040 kb on - strand, within PGA1_c08640 at 892.040 kb on - strand, within PGA1_c08640 at 892.040 kb on - strand, within PGA1_c08640 at 892.040 kb on - strand, within PGA1_c08640 at 892.040 kb on - strand, within PGA1_c08640 at 892.047 kb on + strand, within PGA1_c08640 at 892.132 kb on + strand, within PGA1_c08640 at 892.347 kb on - strand at 892.420 kb on - strand at 892.441 kb on + strand at 892.538 kb on - strand at 892.538 kb on - strand at 892.538 kb on - strand at 892.538 kb on - strand at 892.538 kb on - strand at 892.538 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 891,332 + +0.1 891,332 + -1.5 891,332 + -0.1 891,332 + +0.0 891,340 - +0.2 891,347 + -0.2 891,350 - -1.5 891,355 - +1.0 891,406 + -1.6 891,414 - +0.5 891,415 + +0.8 891,435 + -0.6 891,440 - +0.1 891,744 - PGA1_c08640 0.33 -0.3 891,794 - PGA1_c08640 0.39 -0.4 891,920 + PGA1_c08640 0.51 -0.1 891,921 - PGA1_c08640 0.51 +0.2 891,922 - PGA1_c08640 0.52 -0.5 892,032 + PGA1_c08640 0.63 -0.4 892,032 + PGA1_c08640 0.63 -0.0 892,032 + PGA1_c08640 0.63 -1.4 892,032 + PGA1_c08640 0.63 -0.7 892,032 + PGA1_c08640 0.63 -2.1 892,032 + PGA1_c08640 0.63 -0.6 892,032 + PGA1_c08640 0.63 +0.8 892,032 + PGA1_c08640 0.63 +0.1 892,040 - PGA1_c08640 0.64 -0.0 892,040 - PGA1_c08640 0.64 -1.0 892,040 - PGA1_c08640 0.64 -2.7 892,040 - PGA1_c08640 0.64 +0.3 892,040 - PGA1_c08640 0.64 -0.6 892,040 - PGA1_c08640 0.64 -0.5 892,040 - PGA1_c08640 0.64 -1.3 892,047 + PGA1_c08640 0.64 -0.6 892,132 + PGA1_c08640 0.73 -1.1 892,347 - -1.1 892,420 - -0.8 892,441 + -0.2 892,538 - -0.2 892,538 - -0.6 892,538 - -0.3 892,538 - +0.2 892,538 - -1.3 892,538 - -0.8
Or see this region's nucleotide sequence