Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07960 and PGA1_c07970 are separated by 58 nucleotides PGA1_c07970 and PGA1_c07980 are separated by 46 nucleotides PGA1_c07980 and PGA1_c07990 overlap by 1 nucleotides
PGA1_c07960: PGA1_c07960 - putative integral membrane protein, at 825,679 to 827,196
_c07960
PGA1_c07970: PGA1_c07970 - putative membrane transport protein, at 827,255 to 828,187
_c07970
PGA1_c07980: PGA1_c07980 - metallo beta-lactamase domain-containing protein, at 828,234 to 829,031
_c07980
PGA1_c07990: PGA1_c07990 - putative hydrolase, TatD family, at 829,031 to 829,852
_c07990
Position (kb) 827
828
829 Strain fitness (log2 ratio) -2
-1
0
1 at 826.309 kb on - strand, within PGA1_c07960 at 826.309 kb on - strand, within PGA1_c07960 at 826.334 kb on - strand, within PGA1_c07960 at 826.407 kb on + strand, within PGA1_c07960 at 826.520 kb on + strand, within PGA1_c07960 at 826.525 kb on + strand, within PGA1_c07960 at 826.538 kb on - strand, within PGA1_c07960 at 826.886 kb on + strand, within PGA1_c07960 at 826.963 kb on + strand, within PGA1_c07960 at 826.963 kb on + strand, within PGA1_c07960 at 826.963 kb on + strand, within PGA1_c07960 at 826.971 kb on - strand, within PGA1_c07960 at 826.978 kb on + strand, within PGA1_c07960 at 826.992 kb on - strand, within PGA1_c07960 at 827.006 kb on + strand, within PGA1_c07960 at 827.112 kb on - strand at 827.222 kb on - strand at 827.280 kb on - strand at 827.280 kb on - strand at 827.284 kb on - strand at 827.290 kb on + strand at 827.326 kb on + strand at 827.363 kb on + strand, within PGA1_c07970 at 827.399 kb on + strand, within PGA1_c07970 at 827.409 kb on + strand, within PGA1_c07970 at 827.409 kb on - strand, within PGA1_c07970 at 827.412 kb on - strand, within PGA1_c07970 at 827.431 kb on + strand, within PGA1_c07970 at 827.459 kb on - strand, within PGA1_c07970 at 827.549 kb on - strand, within PGA1_c07970 at 827.621 kb on + strand, within PGA1_c07970 at 827.628 kb on + strand, within PGA1_c07970 at 827.628 kb on + strand, within PGA1_c07970 at 827.634 kb on - strand, within PGA1_c07970 at 827.636 kb on + strand, within PGA1_c07970 at 827.636 kb on - strand, within PGA1_c07970 at 827.648 kb on + strand, within PGA1_c07970 at 827.648 kb on + strand, within PGA1_c07970 at 827.648 kb on + strand, within PGA1_c07970 at 827.666 kb on + strand, within PGA1_c07970 at 827.684 kb on - strand, within PGA1_c07970 at 827.744 kb on + strand, within PGA1_c07970 at 827.947 kb on - strand, within PGA1_c07970 at 827.950 kb on + strand, within PGA1_c07970 at 827.950 kb on + strand, within PGA1_c07970 at 827.958 kb on - strand, within PGA1_c07970 at 827.983 kb on - strand, within PGA1_c07970 at 827.998 kb on + strand, within PGA1_c07970 at 828.006 kb on - strand, within PGA1_c07970 at 828.119 kb on + strand at 828.281 kb on + strand at 828.281 kb on + strand at 828.296 kb on - strand at 828.348 kb on + strand, within PGA1_c07980 at 828.356 kb on - strand, within PGA1_c07980 at 828.356 kb on - strand, within PGA1_c07980 at 828.417 kb on + strand, within PGA1_c07980 at 828.529 kb on - strand, within PGA1_c07980 at 828.530 kb on + strand, within PGA1_c07980 at 828.620 kb on + strand, within PGA1_c07980 at 828.620 kb on + strand, within PGA1_c07980 at 828.628 kb on - strand, within PGA1_c07980 at 828.635 kb on + strand, within PGA1_c07980 at 828.635 kb on + strand, within PGA1_c07980 at 828.654 kb on - strand, within PGA1_c07980 at 828.763 kb on + strand, within PGA1_c07980 at 828.793 kb on + strand, within PGA1_c07980 at 828.800 kb on - strand, within PGA1_c07980 at 828.884 kb on + strand, within PGA1_c07980 at 828.892 kb on - strand, within PGA1_c07980 at 828.892 kb on - strand, within PGA1_c07980 at 828.892 kb on - strand, within PGA1_c07980 at 828.892 kb on - strand, within PGA1_c07980 at 828.938 kb on - strand, within PGA1_c07980 at 828.991 kb on - strand at 828.994 kb on - strand at 829.035 kb on - strand at 829.134 kb on - strand, within PGA1_c07990 at 829.150 kb on - strand, within PGA1_c07990 at 829.155 kb on + strand, within PGA1_c07990 at 829.155 kb on + strand, within PGA1_c07990 at 829.163 kb on - strand, within PGA1_c07990
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 826,309 - PGA1_c07960 0.42 -0.8 826,309 - PGA1_c07960 0.42 +1.0 826,334 - PGA1_c07960 0.43 -0.5 826,407 + PGA1_c07960 0.48 +0.5 826,520 + PGA1_c07960 0.55 -0.1 826,525 + PGA1_c07960 0.56 +0.4 826,538 - PGA1_c07960 0.57 +0.3 826,886 + PGA1_c07960 0.80 -0.5 826,963 + PGA1_c07960 0.85 +0.8 826,963 + PGA1_c07960 0.85 +0.4 826,963 + PGA1_c07960 0.85 -0.7 826,971 - PGA1_c07960 0.85 +0.1 826,978 + PGA1_c07960 0.86 -0.1 826,992 - PGA1_c07960 0.86 -1.6 827,006 + PGA1_c07960 0.87 -0.2 827,112 - +0.3 827,222 - -0.3 827,280 - +0.1 827,280 - -0.5 827,284 - -0.4 827,290 + +0.4 827,326 + -0.6 827,363 + PGA1_c07970 0.12 -0.3 827,399 + PGA1_c07970 0.15 -0.1 827,409 + PGA1_c07970 0.17 -1.0 827,409 - PGA1_c07970 0.17 -0.5 827,412 - PGA1_c07970 0.17 +0.7 827,431 + PGA1_c07970 0.19 +0.0 827,459 - PGA1_c07970 0.22 -0.1 827,549 - PGA1_c07970 0.32 -1.3 827,621 + PGA1_c07970 0.39 -0.6 827,628 + PGA1_c07970 0.40 +0.1 827,628 + PGA1_c07970 0.40 -1.0 827,634 - PGA1_c07970 0.41 +0.5 827,636 + PGA1_c07970 0.41 -0.1 827,636 - PGA1_c07970 0.41 -2.0 827,648 + PGA1_c07970 0.42 -1.2 827,648 + PGA1_c07970 0.42 -1.1 827,648 + PGA1_c07970 0.42 +0.5 827,666 + PGA1_c07970 0.44 -1.4 827,684 - PGA1_c07970 0.46 -0.6 827,744 + PGA1_c07970 0.52 +0.5 827,947 - PGA1_c07970 0.74 -1.4 827,950 + PGA1_c07970 0.74 -1.1 827,950 + PGA1_c07970 0.74 -0.2 827,958 - PGA1_c07970 0.75 +0.2 827,983 - PGA1_c07970 0.78 +0.2 827,998 + PGA1_c07970 0.80 -1.7 828,006 - PGA1_c07970 0.80 -0.3 828,119 + -0.5 828,281 + +0.7 828,281 + +0.4 828,296 - -1.4 828,348 + PGA1_c07980 0.14 +1.0 828,356 - PGA1_c07980 0.15 -1.5 828,356 - PGA1_c07980 0.15 -0.3 828,417 + PGA1_c07980 0.23 -0.0 828,529 - PGA1_c07980 0.37 -0.2 828,530 + PGA1_c07980 0.37 +0.3 828,620 + PGA1_c07980 0.48 -0.0 828,620 + PGA1_c07980 0.48 -1.0 828,628 - PGA1_c07980 0.49 +0.4 828,635 + PGA1_c07980 0.50 -0.3 828,635 + PGA1_c07980 0.50 -1.9 828,654 - PGA1_c07980 0.53 -0.3 828,763 + PGA1_c07980 0.66 -1.4 828,793 + PGA1_c07980 0.70 +0.4 828,800 - PGA1_c07980 0.71 +0.4 828,884 + PGA1_c07980 0.81 +0.4 828,892 - PGA1_c07980 0.82 -1.5 828,892 - PGA1_c07980 0.82 +0.6 828,892 - PGA1_c07980 0.82 -0.7 828,892 - PGA1_c07980 0.82 -0.2 828,938 - PGA1_c07980 0.88 +0.6 828,991 - -0.7 828,994 - -0.6 829,035 - +0.5 829,134 - PGA1_c07990 0.13 -0.7 829,150 - PGA1_c07990 0.14 -0.7 829,155 + PGA1_c07990 0.15 -0.9 829,155 + PGA1_c07990 0.15 -0.1 829,163 - PGA1_c07990 0.16 -0.1
Or see this region's nucleotide sequence