Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05660

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05650 and PGA1_c05660 are separated by 145 nucleotidesPGA1_c05660 and PGA1_c05670 overlap by 4 nucleotidesPGA1_c05670 and PGA1_c05680 overlap by 4 nucleotides PGA1_c05650: PGA1_c05650 - tRNA pseudouridine synthase A, at 577,398 to 578,171 _c05650 PGA1_c05660: PGA1_c05660 - Predicted ATPase, at 578,317 to 579,732 _c05660 PGA1_c05670: PGA1_c05670 - acetyltransferase domain-containing protein, at 579,729 to 580,283 _c05670 PGA1_c05680: PGA1_c05680 - Predicted membrane protein, at 580,280 to 581,335 _c05680 Position (kb) 578 579 580Strain fitness (log2 ratio) -2 -1 0 1at 577.349 kb on + strandat 577.357 kb on - strandat 577.357 kb on - strandat 577.357 kb on - strandat 577.359 kb on + strandat 577.367 kb on - strandat 577.374 kb on + strandat 577.467 kb on - strandat 577.544 kb on + strand, within PGA1_c05650at 577.571 kb on - strand, within PGA1_c05650at 577.637 kb on - strand, within PGA1_c05650at 578.124 kb on + strandat 578.251 kb on + strandat 578.251 kb on + strandat 578.251 kb on + strandat 578.251 kb on + strandat 578.259 kb on - strandat 578.259 kb on - strandat 578.259 kb on - strandat 578.259 kb on - strandat 578.259 kb on - strandat 578.259 kb on - strandat 578.291 kb on - strandat 578.344 kb on + strandat 578.352 kb on - strandat 578.354 kb on + strandat 578.354 kb on + strandat 578.354 kb on + strandat 578.354 kb on + strandat 578.430 kb on - strandat 578.430 kb on - strandat 578.430 kb on - strandat 578.456 kb on + strandat 578.456 kb on + strandat 578.489 kb on + strand, within PGA1_c05660at 578.647 kb on + strand, within PGA1_c05660at 578.667 kb on + strand, within PGA1_c05660at 578.668 kb on - strand, within PGA1_c05660at 578.782 kb on + strand, within PGA1_c05660at 578.947 kb on + strand, within PGA1_c05660at 578.952 kb on + strand, within PGA1_c05660at 578.952 kb on + strand, within PGA1_c05660at 579.010 kb on - strand, within PGA1_c05660at 579.014 kb on + strand, within PGA1_c05660at 579.159 kb on + strand, within PGA1_c05660at 579.213 kb on - strand, within PGA1_c05660at 579.323 kb on - strand, within PGA1_c05660at 579.419 kb on + strand, within PGA1_c05660at 579.490 kb on - strand, within PGA1_c05660at 579.495 kb on - strand, within PGA1_c05660at 579.511 kb on + strand, within PGA1_c05660at 579.511 kb on + strand, within PGA1_c05660at 579.511 kb on + strand, within PGA1_c05660at 579.519 kb on - strand, within PGA1_c05660at 579.553 kb on + strand, within PGA1_c05660at 579.629 kb on - strandat 579.649 kb on + strandat 579.649 kb on + strandat 579.657 kb on - strandat 579.657 kb on - strandat 579.679 kb on + strandat 579.679 kb on + strandat 579.687 kb on - strandat 579.688 kb on + strandat 579.733 kb on - strandat 579.735 kb on + strandat 579.744 kb on - strandat 579.777 kb on - strandat 579.842 kb on + strand, within PGA1_c05670at 579.852 kb on + strand, within PGA1_c05670at 579.898 kb on + strand, within PGA1_c05670at 579.901 kb on - strand, within PGA1_c05670at 580.046 kb on + strand, within PGA1_c05670at 580.054 kb on - strand, within PGA1_c05670at 580.054 kb on - strand, within PGA1_c05670at 580.100 kb on - strand, within PGA1_c05670at 580.112 kb on + strand, within PGA1_c05670at 580.112 kb on + strand, within PGA1_c05670at 580.137 kb on + strand, within PGA1_c05670at 580.145 kb on - strand, within PGA1_c05670at 580.239 kb on - strandat 580.239 kb on - strandat 580.284 kb on + strandat 580.370 kb on + strandat 580.429 kb on + strand, within PGA1_c05680at 580.494 kb on - strand, within PGA1_c05680at 580.574 kb on + strand, within PGA1_c05680

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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577,349 + -0.3
577,357 - -1.1
577,357 - -0.2
577,357 - -0.2
577,359 + -0.7
577,367 - -0.4
577,374 + +0.2
577,467 - -0.6
577,544 + PGA1_c05650 0.19 -0.6
577,571 - PGA1_c05650 0.22 -0.8
577,637 - PGA1_c05650 0.31 -0.5
578,124 + -1.7
578,251 + -0.2
578,251 + +1.2
578,251 + +0.3
578,251 + -0.3
578,259 - +0.9
578,259 - +1.5
578,259 - -0.7
578,259 - -0.5
578,259 - -0.2
578,259 - -0.4
578,291 - -0.1
578,344 + -0.1
578,352 - -0.2
578,354 + +0.3
578,354 + -0.8
578,354 + +0.9
578,354 + +0.3
578,430 - +0.4
578,430 - -0.3
578,430 - -0.9
578,456 + -0.1
578,456 + -0.0
578,489 + PGA1_c05660 0.12 -0.4
578,647 + PGA1_c05660 0.23 +0.0
578,667 + PGA1_c05660 0.25 -0.5
578,668 - PGA1_c05660 0.25 +0.0
578,782 + PGA1_c05660 0.33 -1.0
578,947 + PGA1_c05660 0.44 -0.0
578,952 + PGA1_c05660 0.45 -0.5
578,952 + PGA1_c05660 0.45 -0.7
579,010 - PGA1_c05660 0.49 -0.4
579,014 + PGA1_c05660 0.49 -0.2
579,159 + PGA1_c05660 0.59 -0.0
579,213 - PGA1_c05660 0.63 -0.5
579,323 - PGA1_c05660 0.71 -1.6
579,419 + PGA1_c05660 0.78 -0.4
579,490 - PGA1_c05660 0.83 -0.4
579,495 - PGA1_c05660 0.83 -0.6
579,511 + PGA1_c05660 0.84 -0.5
579,511 + PGA1_c05660 0.84 -0.1
579,511 + PGA1_c05660 0.84 -0.4
579,519 - PGA1_c05660 0.85 -0.5
579,553 + PGA1_c05660 0.87 +0.2
579,629 - -0.1
579,649 + +0.3
579,649 + -0.3
579,657 - -0.0
579,657 - -0.3
579,679 + +0.3
579,679 + -0.4
579,687 - -0.3
579,688 + -0.2
579,733 - -1.6
579,735 + -0.2
579,744 - -1.2
579,777 - +0.2
579,842 + PGA1_c05670 0.20 -0.1
579,852 + PGA1_c05670 0.22 -0.2
579,898 + PGA1_c05670 0.30 -0.7
579,901 - PGA1_c05670 0.31 -1.6
580,046 + PGA1_c05670 0.57 -1.1
580,054 - PGA1_c05670 0.59 -2.0
580,054 - PGA1_c05670 0.59 -0.4
580,100 - PGA1_c05670 0.67 -0.5
580,112 + PGA1_c05670 0.69 +0.4
580,112 + PGA1_c05670 0.69 -0.7
580,137 + PGA1_c05670 0.74 +0.2
580,145 - PGA1_c05670 0.75 -1.4
580,239 - -0.3
580,239 - +1.0
580,284 + +0.2
580,370 + -0.3
580,429 + PGA1_c05680 0.14 +0.2
580,494 - PGA1_c05680 0.20 +0.4
580,574 + PGA1_c05680 0.28 +0.5

Or see this region's nucleotide sequence