Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4041 and HP15_4042 overlap by 4 nucleotides HP15_4042 and HP15_4043 are separated by 95 nucleotides HP15_4043 and HP15_4044 are separated by 69 nucleotides HP15_4044 and HP15_4045 are separated by 10 nucleotides HP15_4045 and HP15_4046 overlap by 17 nucleotides
HP15_4041: HP15_4041 - OmpA/MotB domain protein, at 4,276,231 to 4,277,256
_4041
HP15_4042: HP15_4042 - MotA/TolQ/ExbB proton channel family protein, at 4,277,253 to 4,277,981
_4042
HP15_4043: HP15_4043 - 4-hydroxybenzoyl-CoA thioesterase, at 4,278,077 to 4,278,523
_4043
HP15_4044: HP15_4044 - ThiJ/PfpI family protein, at 4,278,593 to 4,279,294
_4044
HP15_4045: HP15_4045 - hypothetical protein, at 4,279,305 to 4,279,433
_4045
HP15_4046: HP15_4046 - extracellular solute-binding protein, family 3, at 4,279,417 to 4,280,220
_4046
Position (kb) 4278
4279 Strain fitness (log2 ratio) -2
-1
0
1 at 4277.129 kb on + strand, within HP15_4041 at 4277.251 kb on + strand at 4277.259 kb on - strand at 4277.292 kb on + strand at 4277.302 kb on + strand at 4277.313 kb on + strand at 4277.315 kb on + strand at 4277.315 kb on + strand at 4277.315 kb on + strand at 4277.323 kb on - strand at 4277.345 kb on - strand, within HP15_4042 at 4277.350 kb on - strand, within HP15_4042 at 4277.364 kb on + strand, within HP15_4042 at 4277.410 kb on - strand, within HP15_4042 at 4277.429 kb on - strand, within HP15_4042 at 4277.442 kb on + strand, within HP15_4042 at 4277.491 kb on - strand, within HP15_4042 at 4277.554 kb on + strand, within HP15_4042 at 4277.653 kb on - strand, within HP15_4042 at 4277.667 kb on - strand, within HP15_4042 at 4277.772 kb on - strand, within HP15_4042 at 4277.815 kb on + strand, within HP15_4042 at 4277.892 kb on + strand, within HP15_4042 at 4277.966 kb on + strand at 4278.084 kb on + strand at 4278.137 kb on - strand, within HP15_4043 at 4278.311 kb on - strand, within HP15_4043 at 4278.345 kb on + strand, within HP15_4043 at 4278.348 kb on - strand, within HP15_4043 at 4278.412 kb on - strand, within HP15_4043 at 4278.591 kb on + strand at 4278.607 kb on - strand at 4278.607 kb on - strand at 4278.628 kb on - strand at 4278.634 kb on + strand at 4278.701 kb on - strand, within HP15_4044 at 4278.701 kb on - strand, within HP15_4044 at 4278.757 kb on + strand, within HP15_4044 at 4278.767 kb on + strand, within HP15_4044 at 4278.811 kb on - strand, within HP15_4044 at 4278.865 kb on + strand, within HP15_4044 at 4278.873 kb on - strand, within HP15_4044 at 4278.873 kb on - strand, within HP15_4044 at 4278.915 kb on + strand, within HP15_4044 at 4278.923 kb on - strand, within HP15_4044 at 4278.923 kb on - strand, within HP15_4044 at 4279.021 kb on + strand, within HP15_4044 at 4279.088 kb on - strand, within HP15_4044 at 4279.098 kb on - strand, within HP15_4044 at 4279.109 kb on + strand, within HP15_4044 at 4279.127 kb on - strand, within HP15_4044 at 4279.151 kb on + strand, within HP15_4044 at 4279.278 kb on - strand at 4279.343 kb on - strand, within HP15_4045 at 4279.426 kb on + strand at 4279.489 kb on + strand at 4279.498 kb on + strand, within HP15_4046
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 4,277,129 + HP15_4041 0.88 +0.7 4,277,251 + +0.1 4,277,259 - -0.0 4,277,292 + +0.6 4,277,302 + +0.1 4,277,313 + -0.2 4,277,315 + -0.7 4,277,315 + +0.1 4,277,315 + +0.0 4,277,323 - +0.1 4,277,345 - HP15_4042 0.13 +0.1 4,277,350 - HP15_4042 0.13 +0.3 4,277,364 + HP15_4042 0.15 +0.2 4,277,410 - HP15_4042 0.22 +0.2 4,277,429 - HP15_4042 0.24 -0.6 4,277,442 + HP15_4042 0.26 -0.5 4,277,491 - HP15_4042 0.33 -0.4 4,277,554 + HP15_4042 0.41 -0.0 4,277,653 - HP15_4042 0.55 -0.5 4,277,667 - HP15_4042 0.57 -0.1 4,277,772 - HP15_4042 0.71 -0.7 4,277,815 + HP15_4042 0.77 +0.4 4,277,892 + HP15_4042 0.88 +0.4 4,277,966 + -0.2 4,278,084 + -0.3 4,278,137 - HP15_4043 0.13 -0.2 4,278,311 - HP15_4043 0.52 -0.9 4,278,345 + HP15_4043 0.60 -0.7 4,278,348 - HP15_4043 0.61 -0.2 4,278,412 - HP15_4043 0.75 -0.9 4,278,591 + -1.0 4,278,607 - -0.3 4,278,607 - -0.3 4,278,628 - +0.7 4,278,634 + -0.4 4,278,701 - HP15_4044 0.15 +0.2 4,278,701 - HP15_4044 0.15 +0.7 4,278,757 + HP15_4044 0.23 -0.0 4,278,767 + HP15_4044 0.25 +0.2 4,278,811 - HP15_4044 0.31 +0.4 4,278,865 + HP15_4044 0.39 +0.2 4,278,873 - HP15_4044 0.40 -1.3 4,278,873 - HP15_4044 0.40 -0.4 4,278,915 + HP15_4044 0.46 +0.1 4,278,923 - HP15_4044 0.47 -2.0 4,278,923 - HP15_4044 0.47 +0.0 4,279,021 + HP15_4044 0.61 -0.7 4,279,088 - HP15_4044 0.71 +0.5 4,279,098 - HP15_4044 0.72 +0.3 4,279,109 + HP15_4044 0.74 +0.4 4,279,127 - HP15_4044 0.76 -0.6 4,279,151 + HP15_4044 0.79 +0.0 4,279,278 - +0.9 4,279,343 - HP15_4045 0.29 +0.2 4,279,426 + +0.1 4,279,489 + +0.0 4,279,498 + HP15_4046 0.10 +0.0
Or see this region's nucleotide sequence