Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_78p00490

Experiment: m.b. Nalidixic 0.016 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_78p00480 and PGA1_78p00490 are separated by 242 nucleotidesPGA1_78p00490 and PGA1_78p00500 are separated by 119 nucleotides PGA1_78p00480: PGA1_78p00480 - Uncharacterized conserved protein, at 59,416 to 60,501 _78p00480 PGA1_78p00490: PGA1_78p00490 - putative HTH-type transcriptional regulator, at 60,744 to 61,784 _78p00490 PGA1_78p00500: PGA1_78p00500 - putative transcriptional regulator, at 61,904 to 63,124 _78p00500 Position (kb) 60 61 62Strain fitness (log2 ratio) -1 0 1at 60.040 kb on - strand, within PGA1_78p00480at 60.057 kb on - strand, within PGA1_78p00480at 60.103 kb on + strand, within PGA1_78p00480at 60.111 kb on - strand, within PGA1_78p00480at 60.625 kb on - strandat 60.787 kb on - strandat 60.945 kb on + strand, within PGA1_78p00490at 60.950 kb on + strand, within PGA1_78p00490at 61.082 kb on - strand, within PGA1_78p00490at 61.599 kb on + strand, within PGA1_78p00490at 61.897 kb on - strandat 61.986 kb on - strandat 62.049 kb on - strand, within PGA1_78p00500at 62.289 kb on - strand, within PGA1_78p00500at 62.289 kb on - strand, within PGA1_78p00500at 62.455 kb on + strand, within PGA1_78p00500at 62.455 kb on + strand, within PGA1_78p00500

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
remove
60,040 - PGA1_78p00480 0.57 -0.6
60,057 - PGA1_78p00480 0.59 -0.7
60,103 + PGA1_78p00480 0.63 -0.2
60,111 - PGA1_78p00480 0.64 -0.5
60,625 - -1.1
60,787 - -0.3
60,945 + PGA1_78p00490 0.19 -0.6
60,950 + PGA1_78p00490 0.20 +0.5
61,082 - PGA1_78p00490 0.32 -0.6
61,599 + PGA1_78p00490 0.82 -0.7
61,897 - +0.5
61,986 - -0.1
62,049 - PGA1_78p00500 0.12 +0.4
62,289 - PGA1_78p00500 0.32 +0.5
62,289 - PGA1_78p00500 0.32 +1.2
62,455 + PGA1_78p00500 0.45 -0.0
62,455 + PGA1_78p00500 0.45 -0.4

Or see this region's nucleotide sequence