Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2844 and HP15_2845 are separated by 30 nucleotides HP15_2845 and HP15_2846 are separated by 224 nucleotides HP15_2846 and HP15_2847 are separated by 36 nucleotides HP15_2847 and HP15_2848 are separated by 27 nucleotides
HP15_2844: HP15_2844 - hypothetical protein, at 2,986,221 to 2,986,388
_2844
HP15_2845: HP15_2845 - conserved hypothetical protein, at 2,986,419 to 2,987,099
_2845
HP15_2846: HP15_2846 - conserved hypothetical protein, at 2,987,324 to 2,987,851
_2846
HP15_2847: HP15_2847 - secreted protein containing PEGA domain, at 2,987,888 to 2,988,502
_2847
HP15_2848: HP15_2848 - secreted protein, at 2,988,530 to 2,988,823
_2848
Position (kb)
2987
2988 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2986.562 kb on + strand, within HP15_2845 at 2986.697 kb on + strand, within HP15_2845 at 2986.783 kb on + strand, within HP15_2845 at 2986.924 kb on - strand, within HP15_2845 at 2986.976 kb on + strand, within HP15_2845 at 2987.044 kb on + strand at 2987.166 kb on + strand at 2987.191 kb on + strand at 2987.199 kb on - strand at 2987.241 kb on - strand at 2987.300 kb on - strand at 2987.314 kb on + strand at 2987.334 kb on - strand at 2987.336 kb on + strand at 2987.338 kb on + strand at 2987.344 kb on - strand at 2987.346 kb on - strand at 2987.412 kb on + strand, within HP15_2846 at 2987.417 kb on + strand, within HP15_2846 at 2987.584 kb on + strand, within HP15_2846 at 2987.647 kb on - strand, within HP15_2846 at 2987.678 kb on - strand, within HP15_2846 at 2987.782 kb on + strand, within HP15_2846 at 2987.796 kb on - strand, within HP15_2846 at 2987.913 kb on - strand at 2988.227 kb on + strand, within HP15_2847 at 2988.232 kb on + strand, within HP15_2847 at 2988.354 kb on + strand, within HP15_2847 at 2988.354 kb on + strand, within HP15_2847 at 2988.361 kb on + strand, within HP15_2847 at 2988.431 kb on - strand, within HP15_2847 at 2988.433 kb on + strand, within HP15_2847 at 2988.456 kb on + strand at 2988.456 kb on + strand at 2988.484 kb on + strand at 2988.484 kb on + strand at 2988.484 kb on + strand at 2988.492 kb on + strand at 2988.492 kb on - strand at 2988.492 kb on - strand at 2988.494 kb on + strand at 2988.500 kb on - strand at 2988.502 kb on - strand at 2988.502 kb on - strand at 2988.548 kb on - strand at 2988.613 kb on + strand, within HP15_2848 at 2988.674 kb on + strand, within HP15_2848 at 2988.686 kb on + strand, within HP15_2848 at 2988.704 kb on + strand, within HP15_2848 at 2988.761 kb on + strand, within HP15_2848 at 2988.761 kb on + strand, within HP15_2848 at 2988.781 kb on + strand, within HP15_2848 at 2988.791 kb on - strand, within HP15_2848
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 2,986,562 + HP15_2845 0.21 +0.7 2,986,697 + HP15_2845 0.41 +1.4 2,986,783 + HP15_2845 0.53 +0.3 2,986,924 - HP15_2845 0.74 +0.3 2,986,976 + HP15_2845 0.82 +0.4 2,987,044 + +0.6 2,987,166 + +0.2 2,987,191 + -0.2 2,987,199 - -1.6 2,987,241 - +1.1 2,987,300 - -0.2 2,987,314 + +1.8 2,987,334 - +0.3 2,987,336 + +0.6 2,987,338 + +0.8 2,987,344 - +0.0 2,987,346 - -0.3 2,987,412 + HP15_2846 0.17 -1.3 2,987,417 + HP15_2846 0.18 -2.2 2,987,584 + HP15_2846 0.49 -0.2 2,987,647 - HP15_2846 0.61 -1.2 2,987,678 - HP15_2846 0.67 -0.1 2,987,782 + HP15_2846 0.87 -0.1 2,987,796 - HP15_2846 0.89 -0.3 2,987,913 - -0.0 2,988,227 + HP15_2847 0.55 -0.1 2,988,232 + HP15_2847 0.56 +0.1 2,988,354 + HP15_2847 0.76 +0.1 2,988,354 + HP15_2847 0.76 +0.1 2,988,361 + HP15_2847 0.77 +0.5 2,988,431 - HP15_2847 0.88 +0.6 2,988,433 + HP15_2847 0.89 +0.5 2,988,456 + -0.0 2,988,456 + +0.8 2,988,484 + -0.0 2,988,484 + -0.1 2,988,484 + +0.4 2,988,492 + -0.9 2,988,492 - +0.3 2,988,492 - +0.3 2,988,494 + +0.4 2,988,500 - +0.4 2,988,502 - +1.2 2,988,502 - +0.0 2,988,548 - +0.5 2,988,613 + HP15_2848 0.28 -0.1 2,988,674 + HP15_2848 0.49 -0.2 2,988,686 + HP15_2848 0.53 -0.3 2,988,704 + HP15_2848 0.59 -0.7 2,988,761 + HP15_2848 0.79 -0.5 2,988,761 + HP15_2848 0.79 -0.5 2,988,781 + HP15_2848 0.85 +0.6 2,988,791 - HP15_2848 0.89 +0.6
Or see this region's nucleotide sequence