Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2203 and HP15_2204 are separated by 90 nucleotides HP15_2204 and HP15_2205 are separated by 130 nucleotides HP15_2205 and HP15_2206 are separated by 348 nucleotides
HP15_2203: HP15_2203 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 2,320,356 to 2,322,950
_2203
HP15_2204: HP15_2204 - membrane protein containing DUF81, at 2,323,041 to 2,323,787
_2204
HP15_2205: HP15_2205 - sodium/solute symporter, at 2,323,918 to 2,325,363
_2205
HP15_2206: HP15_2206 - AraC-type DNA-binding domain-containing protein, at 2,325,712 to 2,326,491
_2206
Position (kb)
2323
2324
2325
2326 Strain fitness (log2 ratio)
-2
-1
0
1 at 2323.027 kb on + strand at 2323.087 kb on - strand at 2323.094 kb on - strand at 2323.174 kb on - strand, within HP15_2204 at 2323.536 kb on + strand, within HP15_2204 at 2323.613 kb on - strand, within HP15_2204 at 2323.613 kb on - strand, within HP15_2204 at 2323.791 kb on + strand at 2323.879 kb on + strand at 2324.019 kb on + strand at 2324.027 kb on - strand at 2324.044 kb on + strand at 2324.397 kb on - strand, within HP15_2205 at 2324.621 kb on + strand, within HP15_2205 at 2324.636 kb on + strand, within HP15_2205 at 2324.636 kb on + strand, within HP15_2205 at 2324.644 kb on - strand, within HP15_2205 at 2324.706 kb on - strand, within HP15_2205 at 2324.750 kb on - strand, within HP15_2205 at 2324.751 kb on - strand, within HP15_2205 at 2324.935 kb on - strand, within HP15_2205 at 2324.980 kb on + strand, within HP15_2205 at 2325.045 kb on + strand, within HP15_2205 at 2325.168 kb on + strand, within HP15_2205 at 2325.176 kb on - strand, within HP15_2205 at 2325.220 kb on - strand at 2325.305 kb on + strand at 2325.312 kb on + strand at 2325.313 kb on - strand at 2325.405 kb on + strand at 2325.454 kb on + strand at 2325.454 kb on + strand at 2325.459 kb on + strand at 2325.613 kb on - strand at 2325.781 kb on - strand at 2325.781 kb on - strand at 2325.864 kb on + strand, within HP15_2206 at 2325.871 kb on - strand, within HP15_2206 at 2325.873 kb on - strand, within HP15_2206 at 2325.897 kb on + strand, within HP15_2206 at 2325.904 kb on - strand, within HP15_2206 at 2326.020 kb on + strand, within HP15_2206 at 2326.028 kb on - strand, within HP15_2206 at 2326.041 kb on + strand, within HP15_2206 at 2326.041 kb on + strand, within HP15_2206 at 2326.041 kb on + strand, within HP15_2206 at 2326.049 kb on - strand, within HP15_2206 at 2326.082 kb on + strand, within HP15_2206 at 2326.096 kb on + strand, within HP15_2206 at 2326.127 kb on - strand, within HP15_2206 at 2326.245 kb on + strand, within HP15_2206 at 2326.283 kb on - strand, within HP15_2206 at 2326.353 kb on + strand, within HP15_2206
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 2,323,027 + +0.1 2,323,087 - -0.2 2,323,094 - -0.3 2,323,174 - HP15_2204 0.18 +0.1 2,323,536 + HP15_2204 0.66 -0.2 2,323,613 - HP15_2204 0.77 -0.1 2,323,613 - HP15_2204 0.77 -0.3 2,323,791 + -1.5 2,323,879 + -1.0 2,324,019 + -0.4 2,324,027 - -1.3 2,324,044 + -0.3 2,324,397 - HP15_2205 0.33 +0.2 2,324,621 + HP15_2205 0.49 -1.6 2,324,636 + HP15_2205 0.50 -0.3 2,324,636 + HP15_2205 0.50 -0.4 2,324,644 - HP15_2205 0.50 -0.8 2,324,706 - HP15_2205 0.54 -0.8 2,324,750 - HP15_2205 0.58 +0.6 2,324,751 - HP15_2205 0.58 -0.4 2,324,935 - HP15_2205 0.70 -0.4 2,324,980 + HP15_2205 0.73 -0.7 2,325,045 + HP15_2205 0.78 -0.4 2,325,168 + HP15_2205 0.86 -0.4 2,325,176 - HP15_2205 0.87 -1.0 2,325,220 - -0.3 2,325,305 + -0.3 2,325,312 + +0.6 2,325,313 - -0.4 2,325,405 + -0.7 2,325,454 + +1.4 2,325,454 + -0.6 2,325,459 + -2.5 2,325,613 - -0.5 2,325,781 - +0.2 2,325,781 - +0.5 2,325,864 + HP15_2206 0.19 -0.7 2,325,871 - HP15_2206 0.20 -0.2 2,325,873 - HP15_2206 0.21 -1.0 2,325,897 + HP15_2206 0.24 -0.3 2,325,904 - HP15_2206 0.25 -1.4 2,326,020 + HP15_2206 0.39 -0.9 2,326,028 - HP15_2206 0.41 +0.2 2,326,041 + HP15_2206 0.42 -0.3 2,326,041 + HP15_2206 0.42 -0.1 2,326,041 + HP15_2206 0.42 +0.9 2,326,049 - HP15_2206 0.43 +0.0 2,326,082 + HP15_2206 0.47 +0.2 2,326,096 + HP15_2206 0.49 -0.2 2,326,127 - HP15_2206 0.53 -0.4 2,326,245 + HP15_2206 0.68 -0.3 2,326,283 - HP15_2206 0.73 -0.6 2,326,353 + HP15_2206 0.82 +0.2
Or see this region's nucleotide sequence