Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1993 and HP15_1994 are separated by 17 nucleotides HP15_1994 and HP15_1995 are separated by 2 nucleotides HP15_1995 and HP15_1996 overlap by 23 nucleotides HP15_1996 and HP15_1997 overlap by 4 nucleotides HP15_1997 and HP15_1998 overlap by 1 nucleotides
HP15_1993: HP15_1993 - exonuclease RNase T and DNA polymerase III, at 2,101,139 to 2,101,711
_1993
HP15_1994: HP15_1994 - hypothetical protein, at 2,101,729 to 2,102,124
_1994
HP15_1995: HP15_1995 - hypothetical protein, at 2,102,127 to 2,102,468
_1995
HP15_1996: HP15_1996 - phage Gp37Gp68, at 2,102,446 to 2,103,525
_1996
HP15_1997: HP15_1997 - hypothetical protein, at 2,103,522 to 2,104,019
_1997
HP15_1998: HP15_1998 - conserved hypothetical protein, at 2,104,019 to 2,104,771
_1998
Position (kb)
2102
2103
2104 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2101.502 kb on - strand, within HP15_1993 at 2101.591 kb on - strand, within HP15_1993 at 2101.670 kb on - strand at 2101.670 kb on - strand at 2101.670 kb on - strand at 2101.680 kb on - strand at 2101.773 kb on + strand, within HP15_1994 at 2101.781 kb on - strand, within HP15_1994 at 2101.799 kb on - strand, within HP15_1994 at 2101.822 kb on - strand, within HP15_1994 at 2101.927 kb on - strand, within HP15_1994 at 2101.929 kb on - strand, within HP15_1994 at 2101.971 kb on + strand, within HP15_1994 at 2102.125 kb on - strand at 2102.200 kb on - strand, within HP15_1995 at 2102.200 kb on - strand, within HP15_1995 at 2102.200 kb on - strand, within HP15_1995 at 2102.352 kb on - strand, within HP15_1995 at 2102.426 kb on - strand, within HP15_1995 at 2102.884 kb on - strand, within HP15_1996 at 2103.005 kb on - strand, within HP15_1996 at 2103.008 kb on + strand, within HP15_1996 at 2103.022 kb on - strand, within HP15_1996 at 2103.024 kb on - strand, within HP15_1996 at 2103.150 kb on - strand, within HP15_1996 at 2103.244 kb on - strand, within HP15_1996 at 2103.500 kb on - strand at 2103.621 kb on - strand, within HP15_1997 at 2103.832 kb on + strand, within HP15_1997 at 2103.840 kb on - strand, within HP15_1997 at 2103.956 kb on - strand, within HP15_1997 at 2103.977 kb on + strand at 2104.024 kb on - strand at 2104.114 kb on - strand, within HP15_1998 at 2104.117 kb on + strand, within HP15_1998 at 2104.122 kb on + strand, within HP15_1998 at 2104.137 kb on + strand, within HP15_1998 at 2104.145 kb on - strand, within HP15_1998 at 2104.175 kb on - strand, within HP15_1998 at 2104.205 kb on - strand, within HP15_1998 at 2104.245 kb on - strand, within HP15_1998 at 2104.392 kb on + strand, within HP15_1998
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 2,101,502 - HP15_1993 0.63 +0.4 2,101,591 - HP15_1993 0.79 -0.0 2,101,670 - +0.1 2,101,670 - -0.8 2,101,670 - +0.9 2,101,680 - -0.4 2,101,773 + HP15_1994 0.11 -3.0 2,101,781 - HP15_1994 0.13 -0.8 2,101,799 - HP15_1994 0.18 +0.5 2,101,822 - HP15_1994 0.23 +0.2 2,101,927 - HP15_1994 0.50 +0.1 2,101,929 - HP15_1994 0.51 -0.1 2,101,971 + HP15_1994 0.61 -0.9 2,102,125 - -0.8 2,102,200 - HP15_1995 0.21 -1.0 2,102,200 - HP15_1995 0.21 -0.5 2,102,200 - HP15_1995 0.21 -0.7 2,102,352 - HP15_1995 0.66 -0.0 2,102,426 - HP15_1995 0.87 +0.0 2,102,884 - HP15_1996 0.41 -0.1 2,103,005 - HP15_1996 0.52 -0.2 2,103,008 + HP15_1996 0.52 -2.2 2,103,022 - HP15_1996 0.53 -0.5 2,103,024 - HP15_1996 0.54 +0.2 2,103,150 - HP15_1996 0.65 -0.1 2,103,244 - HP15_1996 0.74 -1.2 2,103,500 - +0.2 2,103,621 - HP15_1997 0.20 -0.5 2,103,832 + HP15_1997 0.62 -1.8 2,103,840 - HP15_1997 0.64 +0.2 2,103,956 - HP15_1997 0.87 +0.8 2,103,977 + -0.0 2,104,024 - +0.5 2,104,114 - HP15_1998 0.13 +0.3 2,104,117 + HP15_1998 0.13 -1.8 2,104,122 + HP15_1998 0.14 -0.1 2,104,137 + HP15_1998 0.16 +0.0 2,104,145 - HP15_1998 0.17 +0.1 2,104,175 - HP15_1998 0.21 +0.5 2,104,205 - HP15_1998 0.25 -1.7 2,104,245 - HP15_1998 0.30 +0.1 2,104,392 + HP15_1998 0.50 -0.3
Or see this region's nucleotide sequence