Strain Fitness in Marinobacter adhaerens HP15 around HP15_1915

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1914 and HP15_1915 are separated by 2 nucleotidesHP15_1915 and HP15_1916 overlap by 4 nucleotides HP15_1914: HP15_1914 - asparagine synthase, glutamine-hydrolyzing, at 2,027,916 to 2,029,814 _1914 HP15_1915: HP15_1915 - glycosyl transferase, group 1, at 2,029,817 to 2,030,968 _1915 HP15_1916: HP15_1916 - O-antigen polymerase, at 2,030,965 to 2,032,335 _1916 Position (kb) 2029 2030 2031Strain fitness (log2 ratio) -3 -2 -1 0 1at 2028.968 kb on - strand, within HP15_1914at 2028.987 kb on + strand, within HP15_1914at 2029.109 kb on + strand, within HP15_1914at 2029.121 kb on + strand, within HP15_1914at 2029.121 kb on + strand, within HP15_1914at 2029.129 kb on - strand, within HP15_1914at 2029.233 kb on - strand, within HP15_1914at 2029.444 kb on + strand, within HP15_1914at 2029.661 kb on - strandat 2029.688 kb on - strandat 2029.728 kb on + strandat 2029.747 kb on + strandat 2029.964 kb on - strand, within HP15_1915at 2030.029 kb on - strand, within HP15_1915at 2030.228 kb on - strand, within HP15_1915at 2030.271 kb on + strand, within HP15_1915at 2030.285 kb on + strand, within HP15_1915at 2030.300 kb on - strand, within HP15_1915at 2030.530 kb on - strand, within HP15_1915at 2030.531 kb on + strand, within HP15_1915at 2030.562 kb on + strand, within HP15_1915at 2030.587 kb on + strand, within HP15_1915at 2030.612 kb on + strand, within HP15_1915at 2030.698 kb on - strandat 2030.714 kb on + strand, within HP15_1915at 2030.812 kb on - strand, within HP15_1915at 2030.832 kb on - strand, within HP15_1915at 2030.917 kb on - strandat 2031.237 kb on - strand, within HP15_1916at 2031.324 kb on + strand, within HP15_1916at 2031.327 kb on - strand, within HP15_1916at 2031.418 kb on + strand, within HP15_1916at 2031.438 kb on + strand, within HP15_1916at 2031.600 kb on - strand, within HP15_1916at 2031.607 kb on - strand, within HP15_1916at 2031.607 kb on - strand, within HP15_1916at 2031.698 kb on - strand, within HP15_1916at 2031.698 kb on - strand, within HP15_1916at 2031.798 kb on - strand, within HP15_1916at 2031.798 kb on - strand, within HP15_1916at 2031.848 kb on + strand, within HP15_1916at 2031.913 kb on + strand, within HP15_1916at 2031.913 kb on - strand, within HP15_1916

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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2,028,968 - HP15_1914 0.55 -1.0
2,028,987 + HP15_1914 0.56 -0.5
2,029,109 + HP15_1914 0.63 -0.4
2,029,121 + HP15_1914 0.63 -0.3
2,029,121 + HP15_1914 0.63 -1.1
2,029,129 - HP15_1914 0.64 +0.4
2,029,233 - HP15_1914 0.69 -0.5
2,029,444 + HP15_1914 0.80 -2.1
2,029,661 - -3.1
2,029,688 - -0.1
2,029,728 + -0.4
2,029,747 + -1.5
2,029,964 - HP15_1915 0.13 -0.3
2,030,029 - HP15_1915 0.18 +0.3
2,030,228 - HP15_1915 0.36 -0.0
2,030,271 + HP15_1915 0.39 -1.1
2,030,285 + HP15_1915 0.41 -0.1
2,030,300 - HP15_1915 0.42 -0.5
2,030,530 - HP15_1915 0.62 -0.5
2,030,531 + HP15_1915 0.62 +0.0
2,030,562 + HP15_1915 0.65 -0.6
2,030,587 + HP15_1915 0.67 -1.7
2,030,612 + HP15_1915 0.69 +0.7
2,030,698 - -0.5
2,030,714 + HP15_1915 0.78 -0.5
2,030,812 - HP15_1915 0.86 -0.3
2,030,832 - HP15_1915 0.88 -0.6
2,030,917 - -0.6
2,031,237 - HP15_1916 0.20 +0.2
2,031,324 + HP15_1916 0.26 -0.6
2,031,327 - HP15_1916 0.26 +0.1
2,031,418 + HP15_1916 0.33 -0.2
2,031,438 + HP15_1916 0.35 -0.4
2,031,600 - HP15_1916 0.46 -0.1
2,031,607 - HP15_1916 0.47 +0.3
2,031,607 - HP15_1916 0.47 -0.0
2,031,698 - HP15_1916 0.53 +0.1
2,031,698 - HP15_1916 0.53 +0.2
2,031,798 - HP15_1916 0.61 +0.0
2,031,798 - HP15_1916 0.61 -0.0
2,031,848 + HP15_1916 0.64 -1.1
2,031,913 + HP15_1916 0.69 +0.0
2,031,913 - HP15_1916 0.69 -0.5

Or see this region's nucleotide sequence