Strain Fitness in Marinobacter adhaerens HP15 around HP15_1120

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1119 and HP15_1120 overlap by 29 nucleotidesHP15_1120 and HP15_1121 are separated by 169 nucleotidesHP15_1121 and HP15_1122 overlap by 4 nucleotides HP15_1119: HP15_1119 - efflux transporter, RND family, MFP subunit, at 1,147,643 to 1,148,761 _1119 HP15_1120: HP15_1120 - alpha/beta hydrolase fold protein, at 1,148,733 to 1,149,440 _1120 HP15_1121: HP15_1121 - thioesterase superfamily protein, at 1,149,610 to 1,150,116 _1121 HP15_1122: HP15_1122 - conserved hypothetical protein, thioesterase superfamily, at 1,150,113 to 1,150,562 _1122 Position (kb) 1148 1149 1150Strain fitness (log2 ratio) -1 0 1at 1147.736 kb on - strandat 1147.794 kb on + strand, within HP15_1119at 1147.803 kb on + strand, within HP15_1119at 1147.808 kb on + strand, within HP15_1119at 1147.839 kb on + strand, within HP15_1119at 1147.897 kb on + strand, within HP15_1119at 1147.905 kb on - strand, within HP15_1119at 1147.933 kb on + strand, within HP15_1119at 1147.933 kb on + strand, within HP15_1119at 1147.941 kb on - strand, within HP15_1119at 1147.941 kb on - strand, within HP15_1119at 1147.943 kb on + strand, within HP15_1119at 1148.061 kb on - strand, within HP15_1119at 1148.110 kb on + strand, within HP15_1119at 1148.138 kb on - strand, within HP15_1119at 1148.201 kb on + strand, within HP15_1119at 1148.201 kb on + strand, within HP15_1119at 1148.209 kb on - strand, within HP15_1119at 1148.209 kb on - strand, within HP15_1119at 1148.211 kb on + strand, within HP15_1119at 1148.219 kb on - strand, within HP15_1119at 1148.386 kb on - strand, within HP15_1119at 1148.518 kb on - strand, within HP15_1119at 1148.552 kb on + strand, within HP15_1119at 1148.842 kb on + strand, within HP15_1120at 1148.947 kb on + strand, within HP15_1120at 1148.969 kb on + strand, within HP15_1120at 1148.969 kb on + strand, within HP15_1120at 1148.977 kb on - strand, within HP15_1120at 1149.073 kb on - strand, within HP15_1120at 1149.105 kb on - strand, within HP15_1120at 1149.315 kb on - strand, within HP15_1120at 1149.333 kb on - strand, within HP15_1120at 1149.338 kb on + strand, within HP15_1120at 1149.346 kb on - strand, within HP15_1120at 1149.346 kb on - strand, within HP15_1120at 1149.346 kb on - strand, within HP15_1120at 1149.531 kb on - strandat 1149.536 kb on - strandat 1149.621 kb on - strandat 1149.698 kb on + strand, within HP15_1121at 1149.818 kb on + strand, within HP15_1121at 1149.948 kb on + strand, within HP15_1121at 1149.956 kb on - strand, within HP15_1121at 1149.966 kb on - strand, within HP15_1121at 1149.996 kb on - strand, within HP15_1121at 1150.002 kb on + strand, within HP15_1121at 1150.095 kb on - strandat 1150.122 kb on - strandat 1150.212 kb on - strand, within HP15_1122at 1150.214 kb on + strand, within HP15_1122at 1150.404 kb on + strand, within HP15_1122

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
remove
1,147,736 - +0.1
1,147,794 + HP15_1119 0.13 -0.1
1,147,803 + HP15_1119 0.14 +1.0
1,147,808 + HP15_1119 0.15 -0.1
1,147,839 + HP15_1119 0.18 -0.7
1,147,897 + HP15_1119 0.23 +0.1
1,147,905 - HP15_1119 0.23 +0.2
1,147,933 + HP15_1119 0.26 -0.0
1,147,933 + HP15_1119 0.26 -0.1
1,147,941 - HP15_1119 0.27 -0.5
1,147,941 - HP15_1119 0.27 +1.1
1,147,943 + HP15_1119 0.27 -0.2
1,148,061 - HP15_1119 0.37 -0.1
1,148,110 + HP15_1119 0.42 +0.1
1,148,138 - HP15_1119 0.44 +0.6
1,148,201 + HP15_1119 0.50 -0.6
1,148,201 + HP15_1119 0.50 +0.6
1,148,209 - HP15_1119 0.51 +0.2
1,148,209 - HP15_1119 0.51 +0.1
1,148,211 + HP15_1119 0.51 +0.1
1,148,219 - HP15_1119 0.51 +0.6
1,148,386 - HP15_1119 0.66 +1.4
1,148,518 - HP15_1119 0.78 +0.3
1,148,552 + HP15_1119 0.81 -0.4
1,148,842 + HP15_1120 0.15 -0.4
1,148,947 + HP15_1120 0.30 -0.0
1,148,969 + HP15_1120 0.33 -0.2
1,148,969 + HP15_1120 0.33 -1.1
1,148,977 - HP15_1120 0.34 +0.8
1,149,073 - HP15_1120 0.48 -0.7
1,149,105 - HP15_1120 0.53 -0.4
1,149,315 - HP15_1120 0.82 -0.0
1,149,333 - HP15_1120 0.85 -0.6
1,149,338 + HP15_1120 0.85 -0.6
1,149,346 - HP15_1120 0.87 +0.2
1,149,346 - HP15_1120 0.87 -0.4
1,149,346 - HP15_1120 0.87 -0.6
1,149,531 - -0.1
1,149,536 - -0.2
1,149,621 - -0.5
1,149,698 + HP15_1121 0.17 +0.2
1,149,818 + HP15_1121 0.41 -0.4
1,149,948 + HP15_1121 0.67 +0.1
1,149,956 - HP15_1121 0.68 -0.0
1,149,966 - HP15_1121 0.70 +0.4
1,149,996 - HP15_1121 0.76 +0.1
1,150,002 + HP15_1121 0.77 +0.9
1,150,095 - -0.0
1,150,122 - -0.2
1,150,212 - HP15_1122 0.22 -0.6
1,150,214 + HP15_1122 0.22 -1.3
1,150,404 + HP15_1122 0.65 -0.4

Or see this region's nucleotide sequence