Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0070

Experiment: MoLS4 with L-Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0069 and DVUA0070 are separated by 62 nucleotidesDVUA0070 and DVUA0071 are separated by 92 nucleotides DVUA0069: DVUA0069 - GtrA family protein, selenocysteine-containing (TIGR), at 90,871 to 92,028 DVUA0069 DVUA0070: DVUA0070 - conserved domain protein (TIGR), at 92,091 to 94,022 DVUA0070 DVUA0071: DVUA0071 - glycosyl transferase, group 1/2 family protein (TIGR), at 94,115 to 96,271 DVUA0071 Position (kb) 92 93 94 95Strain fitness (log2 ratio) -2 -1 0 1 2at 91.112 kb on - strand, within DVUA0069at 91.231 kb on - strand, within DVUA0069at 91.231 kb on - strand, within DVUA0069at 91.275 kb on + strand, within DVUA0069at 91.323 kb on - strand, within DVUA0069at 91.345 kb on - strand, within DVUA0069at 91.364 kb on + strand, within DVUA0069at 91.400 kb on - strand, within DVUA0069at 91.475 kb on + strand, within DVUA0069at 91.525 kb on - strand, within DVUA0069at 91.590 kb on - strand, within DVUA0069at 91.615 kb on + strand, within DVUA0069at 91.741 kb on + strand, within DVUA0069at 91.778 kb on + strand, within DVUA0069at 91.831 kb on - strand, within DVUA0069at 91.860 kb on - strand, within DVUA0069at 91.910 kb on + strand, within DVUA0069at 91.925 kb on + strandat 91.938 kb on - strandat 92.058 kb on + strandat 92.344 kb on - strand, within DVUA0070at 92.854 kb on + strand, within DVUA0070at 92.911 kb on + strand, within DVUA0070at 92.941 kb on + strand, within DVUA0070at 94.017 kb on + strandat 94.160 kb on + strandat 94.231 kb on + strandat 94.252 kb on + strandat 94.383 kb on + strand, within DVUA0071at 94.678 kb on + strand, within DVUA0071at 94.714 kb on + strand, within DVUA0071at 94.979 kb on - strand, within DVUA0071

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
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91,112 - DVUA0069 0.21 +0.1
91,231 - DVUA0069 0.31 -2.1
91,231 - DVUA0069 0.31 -0.3
91,275 + DVUA0069 0.35 +0.0
91,323 - DVUA0069 0.39 +0.2
91,345 - DVUA0069 0.41 -0.4
91,364 + DVUA0069 0.43 -0.1
91,400 - DVUA0069 0.46 +0.1
91,475 + DVUA0069 0.52 +0.4
91,525 - DVUA0069 0.56 -0.5
91,590 - DVUA0069 0.62 +0.0
91,615 + DVUA0069 0.64 -0.0
91,741 + DVUA0069 0.75 +1.7
91,778 + DVUA0069 0.78 -0.7
91,831 - DVUA0069 0.83 -0.3
91,860 - DVUA0069 0.85 -0.8
91,910 + DVUA0069 0.90 -0.1
91,925 + -0.9
91,938 - -0.6
92,058 + -0.2
92,344 - DVUA0070 0.13 -0.9
92,854 + DVUA0070 0.39 -0.4
92,911 + DVUA0070 0.42 +1.4
92,941 + DVUA0070 0.44 -2.5
94,017 + +0.9
94,160 + +1.9
94,231 + +1.9
94,252 + +1.4
94,383 + DVUA0071 0.12 -1.3
94,678 + DVUA0071 0.26 +2.4
94,714 + DVUA0071 0.28 +0.9
94,979 - DVUA0071 0.40 -1.1

Or see this region's nucleotide sequence