Experiment: MoLS4 with L-Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt chrB and DORF765 overlap by 14 nucleotides DORF765 and DORF768 are separated by 63 nucleotides DORF768 and DVUA0096 are separated by 332 nucleotides DVUA0096 and DORF1985 are separated by 52 nucleotides DORF1985 and DVUA0097 are separated by 70 nucleotides
DVUA0094: chrB - chrB protein (TIGR), at 127,186 to 128,190
chrB
DORF765: DORF765 - SEED: Rhodanese-like protein ChrE, at 128,177 to 128,488
DORF765
DORF768: DORF768 - no description, at 128,552 to 128,830
DORF768
DVUA0096: DVUA0096 - major facilitator superfamily protein (TIGR), at 129,163 to 130,374
DVUA0096
DORF1985: DORF1985 - no description, at 130,427 to 130,636
DORF1985
DVUA0097: DVUA0097 - radical SAM domain protein (TIGR), at 130,707 to 132,206
DVUA0097
Position (kb) 129
130
131 Strain fitness (log2 ratio) -2
-1
0
1
2 at 128.172 kb on - strand at 128.174 kb on + strand at 128.182 kb on - strand at 128.182 kb on - strand at 128.235 kb on + strand, within DORF765 at 128.295 kb on + strand, within DORF765 at 128.305 kb on - strand, within DORF765 at 128.335 kb on - strand, within DORF765 at 128.340 kb on + strand, within DORF765 at 128.395 kb on - strand, within DORF765 at 128.469 kb on + strand at 128.489 kb on + strand at 128.502 kb on + strand at 128.557 kb on - strand at 128.616 kb on + strand, within DORF768 at 128.728 kb on - strand, within DORF768 at 128.759 kb on + strand, within DORF768 at 128.766 kb on + strand, within DORF768 at 128.821 kb on + strand at 128.855 kb on + strand at 128.934 kb on - strand at 128.976 kb on - strand at 129.092 kb on + strand at 129.186 kb on + strand at 129.218 kb on + strand at 129.232 kb on - strand at 129.234 kb on + strand at 129.236 kb on + strand at 129.241 kb on + strand at 129.244 kb on - strand at 129.423 kb on - strand, within DVUA0096 at 129.454 kb on + strand, within DVUA0096 at 129.552 kb on + strand, within DVUA0096 at 129.669 kb on + strand, within DVUA0096 at 129.675 kb on - strand, within DVUA0096 at 129.705 kb on + strand, within DVUA0096 at 129.735 kb on + strand, within DVUA0096 at 129.926 kb on - strand, within DVUA0096 at 129.984 kb on - strand, within DVUA0096 at 129.995 kb on - strand, within DVUA0096 at 130.035 kb on + strand, within DVUA0096 at 130.043 kb on - strand, within DVUA0096 at 130.043 kb on - strand, within DVUA0096 at 130.043 kb on - strand, within DVUA0096 at 130.050 kb on - strand, within DVUA0096 at 130.061 kb on + strand, within DVUA0096 at 130.069 kb on - strand, within DVUA0096 at 130.161 kb on + strand, within DVUA0096 at 130.169 kb on - strand, within DVUA0096 at 130.171 kb on + strand, within DVUA0096 at 130.200 kb on + strand, within DVUA0096 at 130.217 kb on + strand, within DVUA0096 at 130.230 kb on - strand, within DVUA0096 at 130.243 kb on - strand, within DVUA0096 at 130.250 kb on + strand, within DVUA0096 at 130.368 kb on + strand at 130.381 kb on - strand at 130.467 kb on - strand, within DORF1985 at 130.542 kb on + strand, within DORF1985 at 130.581 kb on - strand, within DORF1985 at 130.587 kb on + strand, within DORF1985 at 130.587 kb on + strand, within DORF1985 at 130.650 kb on + strand at 130.665 kb on + strand at 130.674 kb on - strand at 130.688 kb on + strand at 130.703 kb on - strand at 130.703 kb on - strand at 131.014 kb on - strand, within DVUA0097 at 131.037 kb on + strand, within DVUA0097 at 131.050 kb on - strand, within DVUA0097 at 131.055 kb on - strand, within DVUA0097 at 131.065 kb on - strand, within DVUA0097 at 131.086 kb on - strand, within DVUA0097 at 131.270 kb on - strand, within DVUA0097 at 131.324 kb on - strand, within DVUA0097
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N) remove 128,172 - +0.1 128,174 + +0.1 128,182 - -0.1 128,182 - -0.0 128,235 + DORF765 0.19 +2.0 128,295 + DORF765 0.38 -0.1 128,305 - DORF765 0.41 +0.4 128,335 - DORF765 0.51 +0.4 128,340 + DORF765 0.52 -0.3 128,395 - DORF765 0.70 -1.1 128,469 + -0.8 128,489 + +0.0 128,502 + +1.0 128,557 - -0.1 128,616 + DORF768 0.23 -2.1 128,728 - DORF768 0.63 -0.1 128,759 + DORF768 0.74 -1.8 128,766 + DORF768 0.77 -0.5 128,821 + +0.3 128,855 + +0.9 128,934 - +1.3 128,976 - +0.3 129,092 + -0.6 129,186 + -0.2 129,218 + -0.1 129,232 - -0.9 129,234 + -0.3 129,236 + -0.2 129,241 + -0.0 129,244 - -0.7 129,423 - DVUA0096 0.21 -0.1 129,454 + DVUA0096 0.24 +0.5 129,552 + DVUA0096 0.32 +0.3 129,669 + DVUA0096 0.42 -0.3 129,675 - DVUA0096 0.42 +0.2 129,705 + DVUA0096 0.45 -0.1 129,735 + DVUA0096 0.47 -0.1 129,926 - DVUA0096 0.63 +0.9 129,984 - DVUA0096 0.68 +0.3 129,995 - DVUA0096 0.69 +0.2 130,035 + DVUA0096 0.72 -0.3 130,043 - DVUA0096 0.73 +0.0 130,043 - DVUA0096 0.73 -0.0 130,043 - DVUA0096 0.73 +0.4 130,050 - DVUA0096 0.73 -0.4 130,061 + DVUA0096 0.74 -0.2 130,069 - DVUA0096 0.75 -0.1 130,161 + DVUA0096 0.82 -0.0 130,169 - DVUA0096 0.83 -1.1 130,171 + DVUA0096 0.83 +0.2 130,200 + DVUA0096 0.86 +0.0 130,217 + DVUA0096 0.87 +0.9 130,230 - DVUA0096 0.88 -0.2 130,243 - DVUA0096 0.89 +0.0 130,250 + DVUA0096 0.90 -0.1 130,368 + -2.1 130,381 - +1.6 130,467 - DORF1985 0.19 -0.7 130,542 + DORF1985 0.55 -0.1 130,581 - DORF1985 0.73 -0.8 130,587 + DORF1985 0.76 -0.4 130,587 + DORF1985 0.76 -0.2 130,650 + -0.1 130,665 + -0.1 130,674 - -0.6 130,688 + +0.1 130,703 - -0.5 130,703 - -1.7 131,014 - DVUA0097 0.20 -1.2 131,037 + DVUA0097 0.22 -0.2 131,050 - DVUA0097 0.23 -0.3 131,055 - DVUA0097 0.23 -0.3 131,065 - DVUA0097 0.24 -1.8 131,086 - DVUA0097 0.25 +0.7 131,270 - DVUA0097 0.38 -0.8 131,324 - DVUA0097 0.41 -0.6
Or see this region's nucleotide sequence