Experiment: MoLS4 with L-Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0547 and livH are separated by 103 nucleotides livH and DVU0549 are separated by 27 nucleotides
DVU0547: DVU0547 - high-affinity branched chain amino acid ABC transporter, periplasmic branched chain amino acid-binding protein (TIGR), at 616,996 to 618,114
DVU0547
DVU0548: livH - high-affinity branched-chain amino acid ABC transporter, permease protein (TIGR), at 618,218 to 619,126
livH
DVU0549: DVU0549 - proline/arginine ABC transporter, permease component <small>(from data)</small>, at 619,154 to 620,377
DVU0549
Position (kb) 618
619
620 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 617.226 kb on + strand, within DVU0547 at 617.234 kb on - strand, within DVU0547 at 617.301 kb on - strand, within DVU0547 at 617.313 kb on + strand, within DVU0547 at 617.386 kb on - strand, within DVU0547 at 617.405 kb on + strand, within DVU0547 at 617.529 kb on + strand, within DVU0547 at 617.537 kb on - strand, within DVU0547 at 617.582 kb on - strand, within DVU0547 at 617.589 kb on + strand, within DVU0547 at 617.609 kb on + strand, within DVU0547 at 617.619 kb on + strand, within DVU0547 at 617.665 kb on + strand, within DVU0547 at 617.687 kb on - strand, within DVU0547 at 617.796 kb on + strand, within DVU0547 at 617.835 kb on - strand, within DVU0547 at 617.868 kb on + strand, within DVU0547 at 617.893 kb on - strand, within DVU0547 at 617.893 kb on - strand, within DVU0547 at 618.035 kb on - strand at 618.059 kb on + strand at 618.136 kb on - strand at 618.292 kb on + strand at 618.292 kb on + strand at 618.297 kb on + strand at 618.333 kb on - strand, within livH at 618.449 kb on + strand, within livH at 618.464 kb on + strand, within livH at 618.464 kb on + strand, within livH at 618.501 kb on - strand, within livH at 618.521 kb on - strand, within livH at 618.588 kb on - strand, within livH at 618.699 kb on + strand, within livH at 618.706 kb on + strand, within livH at 618.716 kb on - strand, within livH at 618.722 kb on + strand, within livH at 618.739 kb on + strand, within livH at 618.744 kb on + strand, within livH at 618.747 kb on - strand, within livH at 618.747 kb on - strand, within livH at 618.747 kb on - strand, within livH at 618.777 kb on + strand, within livH at 618.801 kb on + strand, within livH at 618.815 kb on - strand, within livH at 618.924 kb on - strand, within livH at 619.060 kb on + strand at 619.113 kb on - strand at 619.245 kb on + strand at 619.361 kb on - strand, within DVU0549 at 619.457 kb on + strand, within DVU0549 at 619.471 kb on + strand, within DVU0549 at 619.518 kb on - strand, within DVU0549 at 619.518 kb on - strand, within DVU0549 at 619.615 kb on - strand, within DVU0549 at 619.616 kb on - strand, within DVU0549 at 619.660 kb on - strand, within DVU0549 at 619.660 kb on - strand, within DVU0549 at 619.678 kb on - strand, within DVU0549 at 619.717 kb on + strand, within DVU0549 at 619.794 kb on + strand, within DVU0549 at 619.877 kb on + strand, within DVU0549 at 619.965 kb on + strand, within DVU0549 at 620.000 kb on + strand, within DVU0549 at 620.007 kb on + strand, within DVU0549 at 620.091 kb on + strand, within DVU0549 at 620.095 kb on - strand, within DVU0549 at 620.100 kb on - strand, within DVU0549
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N) remove 617,226 + DVU0547 0.21 -0.6 617,234 - DVU0547 0.21 +0.5 617,301 - DVU0547 0.27 -0.5 617,313 + DVU0547 0.28 -1.3 617,386 - DVU0547 0.35 -0.5 617,405 + DVU0547 0.37 -1.0 617,529 + DVU0547 0.48 -0.9 617,537 - DVU0547 0.48 -0.6 617,582 - DVU0547 0.52 -0.8 617,589 + DVU0547 0.53 -0.8 617,609 + DVU0547 0.55 -0.8 617,619 + DVU0547 0.56 -1.5 617,665 + DVU0547 0.60 +0.9 617,687 - DVU0547 0.62 -1.3 617,796 + DVU0547 0.71 -0.6 617,835 - DVU0547 0.75 -0.2 617,868 + DVU0547 0.78 +1.2 617,893 - DVU0547 0.80 -1.5 617,893 - DVU0547 0.80 -1.1 618,035 - -0.3 618,059 + -1.0 618,136 - -1.0 618,292 + +0.5 618,292 + +0.1 618,297 + +1.5 618,333 - livH DVU0548 0.13 -0.8 618,449 + livH DVU0548 0.25 -0.9 618,464 + livH DVU0548 0.27 -1.1 618,464 + livH DVU0548 0.27 -1.9 618,501 - livH DVU0548 0.31 -1.1 618,521 - livH DVU0548 0.33 -0.4 618,588 - livH DVU0548 0.41 +1.1 618,699 + livH DVU0548 0.53 -0.7 618,706 + livH DVU0548 0.54 -0.7 618,716 - livH DVU0548 0.55 -1.0 618,722 + livH DVU0548 0.55 -2.3 618,739 + livH DVU0548 0.57 +0.2 618,744 + livH DVU0548 0.58 -1.8 618,747 - livH DVU0548 0.58 -2.6 618,747 - livH DVU0548 0.58 -1.1 618,747 - livH DVU0548 0.58 -1.4 618,777 + livH DVU0548 0.61 -0.7 618,801 + livH DVU0548 0.64 -1.5 618,815 - livH DVU0548 0.66 -1.2 618,924 - livH DVU0548 0.78 +0.0 619,060 + -0.7 619,113 - -1.8 619,245 + -1.4 619,361 - DVU0549 0.17 -1.2 619,457 + DVU0549 0.25 -1.6 619,471 + DVU0549 0.26 -1.4 619,518 - DVU0549 0.30 +0.9 619,518 - DVU0549 0.30 +0.8 619,615 - DVU0549 0.38 -0.7 619,616 - DVU0549 0.38 -0.7 619,660 - DVU0549 0.41 -3.3 619,660 - DVU0549 0.41 -1.2 619,678 - DVU0549 0.43 +0.2 619,717 + DVU0549 0.46 -2.5 619,794 + DVU0549 0.52 +0.1 619,877 + DVU0549 0.59 -1.2 619,965 + DVU0549 0.66 -2.4 620,000 + DVU0549 0.69 -1.2 620,007 + DVU0549 0.70 -0.8 620,091 + DVU0549 0.77 -1.4 620,095 - DVU0549 0.77 -1.8 620,100 - DVU0549 0.77 -1.1
Or see this region's nucleotide sequence