Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0399

Experiment: MoLS4 with L-Glycine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU0398 and DVU0399 overlap by 4 nucleotidesDVU0399 and DVU0400 are separated by 84 nucleotidesDVU0400 and DVU0401 are separated by 17 nucleotides DVU0398: DVU0398 - HMGL-like domain protein (TIGR), at 445,885 to 447,711 DVU0398 DVU0399: DVU0399 - hypothetical protein (TIGR), at 447,708 to 448,496 DVU0399 DVU0400: DVU0400 - hypothetical protein (TIGR), at 448,581 to 449,132 DVU0400 DVU0401: DVU0401 - hypothetical protein (TIGR), at 449,150 to 449,416 DVU0401 Position (kb) 447 448 449Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 447.726 kb on + strandat 447.734 kb on - strandat 447.768 kb on - strandat 447.770 kb on + strandat 447.847 kb on + strand, within DVU0399at 447.847 kb on + strand, within DVU0399at 447.910 kb on + strand, within DVU0399at 447.948 kb on + strand, within DVU0399at 447.956 kb on - strand, within DVU0399at 447.978 kb on + strand, within DVU0399at 448.131 kb on + strand, within DVU0399at 448.157 kb on - strand, within DVU0399at 448.167 kb on - strand, within DVU0399at 448.172 kb on - strand, within DVU0399at 448.182 kb on - strand, within DVU0399at 448.182 kb on - strand, within DVU0399at 448.272 kb on - strand, within DVU0399at 448.306 kb on + strand, within DVU0399at 448.352 kb on + strand, within DVU0399at 448.359 kb on + strand, within DVU0399at 448.360 kb on - strand, within DVU0399at 448.420 kb on + strandat 448.476 kb on - strandat 448.486 kb on - strandat 448.542 kb on + strandat 448.577 kb on - strandat 448.682 kb on + strand, within DVU0400at 448.696 kb on + strand, within DVU0400at 448.719 kb on - strand, within DVU0400at 448.735 kb on + strand, within DVU0400at 448.773 kb on + strand, within DVU0400at 448.773 kb on + strand, within DVU0400at 448.781 kb on - strand, within DVU0400at 448.793 kb on + strand, within DVU0400at 448.801 kb on - strand, within DVU0400at 448.828 kb on + strand, within DVU0400at 448.846 kb on - strand, within DVU0400at 448.875 kb on - strand, within DVU0400at 448.906 kb on - strand, within DVU0400at 449.013 kb on + strand, within DVU0400at 449.027 kb on - strand, within DVU0400at 449.139 kb on + strandat 449.166 kb on + strandat 449.174 kb on - strandat 449.174 kb on - strandat 449.198 kb on - strand, within DVU0401at 449.212 kb on + strand, within DVU0401at 449.324 kb on + strand, within DVU0401at 449.361 kb on - strand, within DVU0401at 449.385 kb on + strand, within DVU0401at 449.393 kb on - strandat 449.465 kb on - strandat 449.484 kb on + strandat 449.494 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
remove
447,726 + -2.3
447,734 - -1.8
447,768 - +2.3
447,770 + -3.5
447,847 + DVU0399 0.18 -3.1
447,847 + DVU0399 0.18 -0.6
447,910 + DVU0399 0.26 -3.2
447,948 + DVU0399 0.30 -2.8
447,956 - DVU0399 0.31 -0.7
447,978 + DVU0399 0.34 -2.3
448,131 + DVU0399 0.54 -2.3
448,157 - DVU0399 0.57 -1.2
448,167 - DVU0399 0.58 -1.5
448,172 - DVU0399 0.59 -2.1
448,182 - DVU0399 0.60 -1.1
448,182 - DVU0399 0.60 +1.5
448,272 - DVU0399 0.71 -1.3
448,306 + DVU0399 0.76 -1.2
448,352 + DVU0399 0.82 -3.8
448,359 + DVU0399 0.83 -1.8
448,360 - DVU0399 0.83 -3.1
448,420 + -1.5
448,476 - +0.2
448,486 - -1.8
448,542 + +1.7
448,577 - +2.7
448,682 + DVU0400 0.18 +2.6
448,696 + DVU0400 0.21 -1.4
448,719 - DVU0400 0.25 -1.8
448,735 + DVU0400 0.28 -2.0
448,773 + DVU0400 0.35 -0.6
448,773 + DVU0400 0.35 +1.9
448,781 - DVU0400 0.36 -0.1
448,793 + DVU0400 0.38 -1.0
448,801 - DVU0400 0.40 +1.3
448,828 + DVU0400 0.45 -0.7
448,846 - DVU0400 0.48 -0.5
448,875 - DVU0400 0.53 -0.5
448,906 - DVU0400 0.59 -1.1
449,013 + DVU0400 0.78 -1.1
449,027 - DVU0400 0.81 -0.9
449,139 + -0.4
449,166 + -0.5
449,174 - +0.1
449,174 - -0.3
449,198 - DVU0401 0.18 +0.2
449,212 + DVU0401 0.23 -1.1
449,324 + DVU0401 0.65 -0.7
449,361 - DVU0401 0.79 +0.6
449,385 + DVU0401 0.88 +0.7
449,393 - +1.3
449,465 - -1.5
449,484 + +0.8
449,494 + +0.2

Or see this region's nucleotide sequence