Experiment: MoLS4 with L-Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dctM and DVU0010 overlap by 4 nucleotides DVU0010 and DVU0011 are separated by 61 nucleotides DVU0011 and DVU0012 are separated by 487 nucleotides
DVU0009: dctM - DedA family protein (TIGR), at 11,681 to 12,961
dctM
DVU0010: DVU0010 - TRAP transporter, DctQ family (TIGR), at 12,958 to 13,524
DVU0010
DVU0011: DVU0011 - TRAP dicarboxylate family transporter (TIGR), at 13,586 to 14,611
DVU0011
DVU0012: DVU0012 - hypothetical protein (TIGR), at 15,099 to 16,301
DVU0012
Position (kb) 13
14
15 Strain fitness (log2 ratio) -2
-1
0
1
2 at 12.641 kb on - strand, within dctM at 12.641 kb on - strand, within dctM at 12.665 kb on + strand, within dctM at 12.670 kb on - strand, within dctM at 12.698 kb on - strand, within dctM at 12.698 kb on - strand, within dctM at 12.753 kb on + strand, within dctM at 12.771 kb on + strand, within dctM at 12.811 kb on - strand, within dctM at 12.965 kb on - strand at 12.965 kb on - strand at 12.986 kb on - strand at 13.000 kb on - strand at 13.055 kb on + strand, within DVU0010 at 13.081 kb on - strand, within DVU0010 at 13.117 kb on - strand, within DVU0010 at 13.126 kb on - strand, within DVU0010 at 13.162 kb on - strand, within DVU0010 at 13.188 kb on - strand, within DVU0010 at 13.194 kb on + strand, within DVU0010 at 13.305 kb on + strand, within DVU0010 at 13.448 kb on + strand, within DVU0010 at 13.448 kb on + strand, within DVU0010 at 13.448 kb on + strand, within DVU0010 at 13.456 kb on - strand, within DVU0010 at 13.500 kb on + strand at 13.587 kb on + strand at 13.595 kb on - strand at 13.596 kb on - strand at 13.649 kb on - strand at 13.664 kb on - strand at 13.728 kb on + strand, within DVU0011 at 13.746 kb on - strand, within DVU0011 at 13.746 kb on - strand, within DVU0011 at 13.788 kb on - strand, within DVU0011 at 13.808 kb on + strand, within DVU0011 at 13.839 kb on + strand, within DVU0011 at 13.839 kb on + strand, within DVU0011 at 13.847 kb on - strand, within DVU0011 at 13.847 kb on - strand, within DVU0011 at 13.854 kb on + strand, within DVU0011 at 13.863 kb on + strand, within DVU0011 at 13.873 kb on + strand, within DVU0011 at 13.873 kb on - strand, within DVU0011 at 13.878 kb on + strand, within DVU0011 at 13.881 kb on - strand, within DVU0011 at 13.883 kb on + strand, within DVU0011 at 13.936 kb on - strand, within DVU0011 at 14.003 kb on + strand, within DVU0011 at 14.003 kb on + strand, within DVU0011 at 14.005 kb on + strand, within DVU0011 at 14.017 kb on + strand, within DVU0011 at 14.048 kb on + strand, within DVU0011 at 14.161 kb on - strand, within DVU0011 at 14.168 kb on - strand, within DVU0011 at 14.186 kb on + strand, within DVU0011 at 14.190 kb on - strand, within DVU0011 at 14.252 kb on - strand, within DVU0011 at 14.328 kb on + strand, within DVU0011 at 14.328 kb on + strand, within DVU0011 at 14.328 kb on + strand, within DVU0011 at 14.328 kb on + strand, within DVU0011 at 14.336 kb on - strand, within DVU0011 at 14.336 kb on - strand, within DVU0011 at 14.336 kb on - strand, within DVU0011 at 14.336 kb on - strand, within DVU0011 at 14.336 kb on - strand, within DVU0011 at 14.354 kb on + strand, within DVU0011 at 14.379 kb on + strand, within DVU0011 at 14.389 kb on + strand, within DVU0011 at 14.394 kb on + strand, within DVU0011 at 14.394 kb on + strand, within DVU0011 at 14.402 kb on - strand, within DVU0011 at 14.407 kb on + strand, within DVU0011 at 14.458 kb on - strand, within DVU0011 at 14.490 kb on + strand, within DVU0011 at 14.495 kb on + strand, within DVU0011 at 14.498 kb on - strand, within DVU0011 at 14.540 kb on - strand at 14.563 kb on + strand at 14.568 kb on + strand at 14.571 kb on - strand at 14.571 kb on - strand at 14.576 kb on - strand at 14.578 kb on + strand at 14.578 kb on + strand at 14.588 kb on + strand at 14.588 kb on + strand at 14.591 kb on - strand at 14.597 kb on - strand at 14.597 kb on - strand at 14.611 kb on + strand at 14.625 kb on - strand at 14.630 kb on - strand at 14.630 kb on - strand at 14.646 kb on + strand at 14.666 kb on - strand at 14.781 kb on + strand at 14.783 kb on + strand at 14.783 kb on + strand at 14.791 kb on - strand at 14.827 kb on + strand at 14.831 kb on - strand at 14.844 kb on + strand at 14.858 kb on + strand at 14.900 kb on + strand at 14.900 kb on + strand at 14.900 kb on + strand at 14.908 kb on - strand at 14.914 kb on + strand at 14.961 kb on - strand at 14.980 kb on + strand at 15.035 kb on + strand at 15.043 kb on - strand at 15.050 kb on + strand at 15.058 kb on - strand at 15.115 kb on - strand at 15.117 kb on + strand at 15.117 kb on + strand at 15.287 kb on + strand, within DVU0012 at 15.502 kb on - strand, within DVU0012 at 15.522 kb on - strand, within DVU0012 at 15.557 kb on - strand, within DVU0012
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N) remove 12,641 - dctM DVU0009 0.75 -0.1 12,641 - dctM DVU0009 0.75 -0.8 12,665 + dctM DVU0009 0.77 +2.5 12,670 - dctM DVU0009 0.77 -0.2 12,698 - dctM DVU0009 0.79 -0.6 12,698 - dctM DVU0009 0.79 -1.4 12,753 + dctM DVU0009 0.84 +0.3 12,771 + dctM DVU0009 0.85 -0.5 12,811 - dctM DVU0009 0.88 +1.1 12,965 - -0.8 12,965 - +0.4 12,986 - +1.2 13,000 - +0.4 13,055 + DVU0010 0.17 +0.4 13,081 - DVU0010 0.22 +0.7 13,117 - DVU0010 0.28 -0.2 13,126 - DVU0010 0.30 +0.3 13,162 - DVU0010 0.36 +0.2 13,188 - DVU0010 0.41 -0.2 13,194 + DVU0010 0.42 +0.8 13,305 + DVU0010 0.61 +0.4 13,448 + DVU0010 0.86 -2.6 13,448 + DVU0010 0.86 -2.3 13,448 + DVU0010 0.86 -1.7 13,456 - DVU0010 0.88 +0.6 13,500 + +0.8 13,587 + -0.5 13,595 - -0.2 13,596 - +0.5 13,649 - -0.5 13,664 - -0.3 13,728 + DVU0011 0.14 -0.6 13,746 - DVU0011 0.16 -0.2 13,746 - DVU0011 0.16 +0.6 13,788 - DVU0011 0.20 -0.8 13,808 + DVU0011 0.22 +0.0 13,839 + DVU0011 0.25 +1.2 13,839 + DVU0011 0.25 -2.5 13,847 - DVU0011 0.25 -1.2 13,847 - DVU0011 0.25 +0.2 13,854 + DVU0011 0.26 -0.4 13,863 + DVU0011 0.27 +0.4 13,873 + DVU0011 0.28 -0.9 13,873 - DVU0011 0.28 -0.8 13,878 + DVU0011 0.28 -0.4 13,881 - DVU0011 0.29 -1.4 13,883 + DVU0011 0.29 -0.3 13,936 - DVU0011 0.34 -0.8 14,003 + DVU0011 0.41 -0.1 14,003 + DVU0011 0.41 +0.4 14,005 + DVU0011 0.41 +0.0 14,017 + DVU0011 0.42 +0.3 14,048 + DVU0011 0.45 -0.2 14,161 - DVU0011 0.56 -0.8 14,168 - DVU0011 0.57 -0.9 14,186 + DVU0011 0.58 +0.3 14,190 - DVU0011 0.59 -0.8 14,252 - DVU0011 0.65 -0.4 14,328 + DVU0011 0.72 -0.3 14,328 + DVU0011 0.72 -1.6 14,328 + DVU0011 0.72 -1.6 14,328 + DVU0011 0.72 +0.1 14,336 - DVU0011 0.73 -2.5 14,336 - DVU0011 0.73 -0.6 14,336 - DVU0011 0.73 +0.2 14,336 - DVU0011 0.73 +1.8 14,336 - DVU0011 0.73 +0.2 14,354 + DVU0011 0.75 -1.3 14,379 + DVU0011 0.77 -0.8 14,389 + DVU0011 0.78 -0.3 14,394 + DVU0011 0.79 +0.4 14,394 + DVU0011 0.79 -0.8 14,402 - DVU0011 0.80 -0.2 14,407 + DVU0011 0.80 +0.5 14,458 - DVU0011 0.85 -0.0 14,490 + DVU0011 0.88 -0.8 14,495 + DVU0011 0.89 -1.7 14,498 - DVU0011 0.89 -0.3 14,540 - -0.1 14,563 + +0.1 14,568 + -0.2 14,571 - -0.4 14,571 - -0.3 14,576 - +1.5 14,578 + -0.7 14,578 + -0.0 14,588 + -0.4 14,588 + +0.5 14,591 - +0.1 14,597 - +0.0 14,597 - -0.4 14,611 + +0.7 14,625 - +1.7 14,630 - -0.8 14,630 - -1.0 14,646 + -0.4 14,666 - +0.4 14,781 + -0.1 14,783 + -1.1 14,783 + -2.3 14,791 - +0.2 14,827 + -0.7 14,831 - -0.0 14,844 + +0.4 14,858 + -0.7 14,900 + +0.3 14,900 + +0.7 14,900 + -0.3 14,908 - -0.5 14,914 + -0.4 14,961 - -1.1 14,980 + +1.2 15,035 + -0.8 15,043 - -1.6 15,050 + +0.5 15,058 - -0.4 15,115 - -0.1 15,117 + -0.5 15,117 + +0.3 15,287 + DVU0012 0.16 +0.1 15,502 - DVU0012 0.33 -0.2 15,522 - DVU0012 0.35 -1.8 15,557 - DVU0012 0.38 -0.8
Or see this region's nucleotide sequence